42 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Pars_0264  CDS  NC_009376  236375  236641  267  regulatory protein, ArsR  YP_001152529  normal  0.297288  decreased coverage  0.00633224  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_0936  CDS  NC_009376  827664  828536  873  polysulphide reductase, NrfD  YP_001153168  decreased coverage  3.69278e-06  normal  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_0972  CDS  NC_009376  863684  863995  312  hypothetical protein  YP_001153204  decreased coverage  0.00254861  unclonable  9.38099e-14  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_0973  CDS  NC_009376  863976  864503  528  hypothetical protein  YP_001153205  decreased coverage  0.00177478  unclonable  1.29242e-13  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1110  CDS  NC_009376  997275  997814  540  hypothetical protein  YP_001153340  decreased coverage  0.000181027  normal  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1111  CDS  NC_009376  997811  998860  1050  hypothetical protein  YP_001153341  decreased coverage  0.000841175  normal  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1164  CDS  NC_009376  1049932  1051839  1908  aldehyde ferredoxin oxidoreductase  YP_001153387  normal  0.19471  decreased coverage  0.00826779  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1203  CDS  NC_009376  1089745  1090230  486  alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen  YP_001153423  decreased coverage  0.00883654  normal  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1254  CDS  NC_009376  1133039  1134031  993  putative RNA methylase  YP_001153470  decreased coverage  0.00904523  normal  0.667506  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1319  CDS  NC_009376  1190719  1191435  717  undecaprenyl diphosphate synthase  YP_001153534  decreased coverage  0.000351697  normal  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1320  CDS  NC_009376  1191413  1191739  327  methionyl-tRNA synthetase, beta subunit  YP_001153535  decreased coverage  0.000452217  normal  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1339  CDS  NC_009376  1205088  1206095  1008  hypothetical protein  YP_001153554  decreased coverage  0.00496321  normal  0.353078  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1379  CDS  NC_009376  1240776  1242602  1827  glutamyl-tRNA(Gln) amidotransferase subunit E  YP_001153593  decreased coverage  0.00195959  decreased coverage  0.0032704  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1435  CDS  NC_009376  1293504  1293947  444  abortive infection protein  YP_001153645  normal  0.312247  decreased coverage  0.00199612  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1436  CDS  NC_009376  1293927  1295357  1431  radical SAM domain-containing protein  YP_001153646  normal  0.37868  decreased coverage  0.00181566  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1624  CDS  NC_009376  1462626  1463513  888  peptidase M48, Ste24p  YP_001153830  decreased coverage  0.00256903  normal  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1625  CDS  NC_009376  1463543  1463911  369  hypothetical protein  YP_001153831  decreased coverage  0.000630451  normal  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1689  CDS  NC_009376  1524665  1525507  843  xylose isomerase domain-containing protein  YP_001153892  decreased coverage  5.47831e-07  normal  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1690  CDS  NC_009376  1525553  1527397  1845  hypothetical protein  YP_001153893  decreased coverage  2.20008e-05  normal  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1727  CDS  NC_009376  1555606  1555920  315  hypothetical protein  YP_001153930  normal  0.108372  decreased coverage  0.000272238  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1728  CDS  NC_009376  1556090  1557367  1278  beta-lactamase domain-containing protein  YP_001153931  normal  0.254192  decreased coverage  0.00045837  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1730  CDS  NC_009376  1558048  1558764  717  30S ribosomal protein S4e  YP_001153933  normal  0.84836  decreased coverage  0.000360603  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1731  CDS  NC_009376  1558761  1559189  429  hypothetical protein  YP_001153934  normal  0.838246  decreased coverage  0.000329798  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1733  CDS  NC_009376  1560189  1561157  969  oligopeptide/dipeptide ABC transporter, ATPase subunit  YP_001153936  normal  0.856595  decreased coverage  0.000426815  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1734  CDS  NC_009376  1561173  1562018  846  ribokinase-like domain-containing protein  YP_001153937  normal  0.264913  decreased coverage  0.000421461  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1735  CDS  NC_009376  1561996  1562856  861  signal transduction protein  YP_001153938  normal  0.281156  decreased coverage  0.000421461  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1736  CDS  NC_009376  1562996  1563919  924  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding  YP_001153939  normal  0.0768947  decreased coverage  0.000401897  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1740  CDS  NC_009376  1566150  1567406  1257  tRNA CCA-pyrophosphorylase  YP_001153943  normal  0.753345  decreased coverage  0.000389887  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1741  CDS  NC_009376  1567403  1567966  564  2'-5' RNA ligase  YP_001153944  normal  decreased coverage  0.000285675  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1742  CDS  NC_009376  1567963  1568403  441  MarR family transcriptional regulator  YP_001153945  normal  0.367615  decreased coverage  0.000262536  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1754  CDS  NC_009376  1574211  1574573  363  translation initiation factor SUI1  YP_001153957  decreased coverage  1.13267e-07  hitchhiker  0.00210388  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1764  CDS  NC_009376  1582955  1585330  2376  hypothetical protein  YP_001153967  normal  0.0673103  decreased coverage  0.000629319  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1765  CDS  NC_009376  1585323  1586738  1416  major facilitator transporter  YP_001153968  normal  0.719018  decreased coverage  0.000452829  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1774  CDS  NC_009376  1595304  1595468  165  hypothetical protein  YP_001153977  decreased coverage  0.00581162  hitchhiker  0.00985328  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1775  CDS  NC_009376  1595566  1596516  951  hypothetical protein  YP_001153978  decreased coverage  0.00248145  normal  0.0126682  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1835  CDS  NC_009376  1642307  1642669  363  hypothetical protein  YP_001154038  decreased coverage  1.13967e-06  normal  0.135826  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_1836  CDS  NC_009376  1642701  1644248  1548  phenylalanyl-tRNA synthetase subunit beta  YP_001154039  decreased coverage  4.4506e-05  normal  0.183571  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_2251  CDS  NC_009376  2017598  2018371  774  uroporphyrin-III C-methyltransferase  YP_001154449  decreased coverage  0.00937998  normal  0.18595  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_2278  CDS  NC_009376  2039110  2040318  1209  pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein  YP_001154474  decreased coverage  0.00165229  normal  0.451906  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_2323  CDS  NC_009376  2080652  2081791  1140  DNA-directed RNA polymerase subunit A''  YP_001154519  normal  0.0147496  decreased coverage  2.06974e-06  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_2324  CDS  NC_009376  2081831  2082145  315  50S ribosomal protein L30e  YP_001154520  hitchhiker  0.00112363  decreased coverage  1.31397e-06  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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Pars_2325  CDS  NC_009376  2082138  2082572  435  transcription elongation factor NusA-like protein  YP_001154521  hitchhiker  4.11828e-05  decreased coverage  1.48869e-06  Pyrobaculum arsenaticum DSM 13514  Archaea 
 
 
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