116 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Sbal_0021  CDS  NC_009052  22830  24980  2151  multifunctional fatty acid oxidation complex subunit alpha  YP_001048426  decreased coverage  0.000906563  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_0138  CDS  NC_009052  158586  160550  1965  sulfatase  YP_001048541  decreased coverage  0.000529062  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_0172  CDS  NC_009052  198071  198784  714  cell division ATP-binding protein FtsE  YP_001048575  decreased coverage  1.52449e-07  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_0173  CDS  NC_009052  198781  199746  966  hypothetical protein  YP_001048576  decreased coverage  3.03587e-07  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_0261  CDS  NC_009052  296375  297061  687  two component transcriptional regulator  YP_001048664  decreased coverage  3.61731e-06  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_0279  CDS  NC_009052  314776  316236  1461  diguanylate cyclase  YP_001048681  decreased coverage  0.00774453  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_0322  CDS  NC_009052  360262  360585  324  rhodanese domain-containing protein  YP_001048724  decreased coverage  3.033e-09  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_0323  CDS  NC_009052  360731  361306  576  XRE family transcriptional regulator  YP_001048725  decreased coverage  7.37434e-09  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_0353  CDS  NC_009052  391884  393989  2106  bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase  YP_001048755  decreased coverage  0.00912005  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_0468  CDS  NC_009052  533302  533979  678  short-chain dehydrogenase/reductase SDR  YP_001048867  decreased coverage  5.83805e-06  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_0469  CDS  NC_009052  534061  534510  450  acetyl-CoA carboxylase, biotin carboxyl carrier protein  YP_001048868  decreased coverage  3.77468e-07  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_0526  CDS  NC_009052  588633  589817  1185  hypothetical protein  YP_001048924  decreased coverage  3.43561e-07  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_0563  CDS  NC_009052  636485  637699  1215  cytochrome b/b6 domain-containing protein  YP_001048961  decreased coverage  1.89636e-07  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_0578  CDS  NC_009052  653004  653639  636  cAMP-regulatory protein  YP_001048976  decreased coverage  0.001638  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_0679  CDS  NC_009052  771489  772028  540  membrane-flanked domain-containing protein  YP_001049076  decreased coverage  0.000277417  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_0695  CDS  NC_009052  789366  790616  1251  glutamyl-tRNA reductase  YP_001049092  decreased coverage  1.50429e-06  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_0827  CDS  NC_009052  929341  931335  1995  transketolase  YP_001049221  decreased coverage  3.24946e-05  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_0952  CDS  NC_009052  1091266  1093356  2091  TonB-dependent heme/hemoglobin receptor family protein  YP_001049345  decreased coverage  3.91517e-06  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_1044  CDS  NC_009052  1201796  1202752  957  transaldolase B  YP_001049437  decreased coverage  2.65536e-08  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_1049  CDS  NC_009052  1209567  1210973  1407  peptidase M28  YP_001049442  decreased coverage  2.3249e-06  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_1051  CDS  NC_009052  1211470  1211736  267  30S ribosomal protein S20  YP_001049444  decreased coverage  2.04572e-08  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_1084  CDS  NC_009052  1248976  1249911  936  ATPase BadF/BadG/BcrA/BcrD type  YP_001049475  decreased coverage  5.00246e-08  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_1091  CDS  NC_009052  1256602  1258092  1491  methylmalonate-semialdehyde dehydrogenase  YP_001049482  decreased coverage  0.00014498  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_1092  CDS  NC_009052  1258162  1259526  1365  beta alanine--pyruvate transaminase  YP_001049483  decreased coverage  0.00103831  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_1108  CDS  NC_009052  1274617  1275717  1101  extracellular solute-binding protein  YP_001049498  decreased coverage  3.16767e-05  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_1133  CDS  NC_009052  1305599  1308259  2661  glycoside hydrolase family 3 domain protein  YP_001049522  decreased coverage  0.000321468  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_1169  CDS  NC_009052  1348283  1349689  1407  peptidase M23B  YP_001049557  decreased coverage  0.000504545  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_1171  CDS  NC_009052  1351191  1351619  429  hypothetical protein  YP_001049559  decreased coverage  0.00852739  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_1198  CDS  NC_009052  1379901  1380374  474  positive regulator of sigma E, RseC/MucC  YP_001049585  decreased coverage  6.34638e-05  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_1231  CDS  NC_009052  1415489  1416346  858  extracellular solute-binding protein  YP_001049618  decreased coverage  1.26239e-05  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_1241  CDS  NC_009052  1427082  1427732  651  two component LuxR family transcriptional regulator  YP_001049628  decreased coverage  3.99601e-05  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_1315  CDS  NC_009052  1495024  1497489  2466  TonB-dependent receptor plug  YP_001049702  decreased coverage  5.29097e-05  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_1355  CDS  NC_009052  1554944  1555873  930  inorganic polyphosphate/ATP-NAD kinase  YP_001049742  decreased coverage  5.2487e-08  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_1481  CDS  NC_009052  1722937  1723419  483  ferredoxin-type protein NapF  YP_001049868  decreased coverage  1.95514e-07  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_1490  CDS  NC_009052  1732624  1733271  648  outer membrane protein W  YP_001049877  decreased coverage  6.49255e-05  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_1491  CDS  NC_009052  1733365  1734108  744  short-chain dehydrogenase/reductase SDR  YP_001049878  decreased coverage  0.000349992  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_1640  CDS  NC_009052  1919685  1920467  783  hypothetical protein  YP_001050021  decreased coverage  0.00662139  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_1672    NC_009052  1951113  1952573  1461      decreased coverage  0.000265781  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_1849  CDS  NC_009052  2149443  2149892  450  hypothetical protein  YP_001050224  decreased coverage  8.92049e-06  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_1874  CDS  NC_009052  2173429  2175816  2388  phenylalanyl-tRNA synthetase subunit beta  YP_001050249  decreased coverage  0.000755096  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_1890  CDS  NC_009052  2191525  2191992  468  redoxin domain-containing protein  YP_001050265  decreased coverage  5.01621e-05  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_1895  CDS  NC_009052  2195475  2196872  1398  integral membrane sensor signal transduction histidine kinase  YP_001050270  decreased coverage  0.00272877  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_1915  CDS  NC_009052  2225489  2225824  336  hypothetical protein  YP_001050290  decreased coverage  3.05093e-07  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_1919  CDS  NC_009052  2229887  2231935  2049  peptidase S9 prolyl oligopeptidase  YP_001050294  decreased coverage  3.23792e-06  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2040  CDS  NC_009052  2365343  2365864  522  Holliday junction resolvase  YP_001050411  decreased coverage  8.85772e-08  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2041  CDS  NC_009052  2365861  2366478  618  Holliday junction DNA helicase RuvA  YP_001050412  decreased coverage  8.69116e-09  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2070  CDS  NC_009052  2403136  2404803  1668  30S ribosomal protein S1  YP_001050440  decreased coverage  1.32225e-06  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2155  CDS  NC_009052  2499605  2500111  507  leucine-responsive transcriptional regulator  YP_001050521  decreased coverage  5.84376e-09  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2166  CDS  NC_009052  2508634  2509293  660  hypothetical protein  YP_001050532  decreased coverage  1.69017e-08  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2205  CDS  NC_009052  2550469  2550948  480  hypothetical protein  YP_001050570  decreased coverage  6.48455e-08  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2217  CDS  NC_009052  2564553  2565452  900  hypothetical protein  YP_001050582  decreased coverage  1.1736e-07  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2218  CDS  NC_009052  2565654  2566664  1011  glyceraldehyde-3-phosphate dehydrogenase, type I  YP_001050583  decreased coverage  1.70571e-07  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2265  CDS  NC_009052  2623315  2623956  642  endonuclease III  YP_001050630  decreased coverage  6.35696e-07  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2370  CDS  NC_009052  2759156  2760334  1179  topoisomerase IV, subunit B  YP_001050732  decreased coverage  1.78765e-06  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2371  CDS  NC_009052  2760345  2760782  438  hypothetical protein  YP_001050733  decreased coverage  5.4432e-08  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2400  CDS  NC_009052  2789422  2790150  729  RNA methyltransferase  YP_001050762  decreased coverage  2.62197e-07  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2406  CDS  NC_009052  2795625  2799113  3489  transcription-repair coupling factor  YP_001050768  decreased coverage  0.00482386  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2478  CDS  NC_009052  2891645  2892823  1179  tRNA-specific 2-thiouridylase MnmA  YP_001050840  decreased coverage  1.32355e-06  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2519  CDS  NC_009052  2943276  2943671  396  succinate dehydrogenase, cytochrome b subunit  YP_001050881  decreased coverage  4.47575e-05  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2558  CDS  NC_009052  2994423  2995136  714  peptidase E  YP_001050920  decreased coverage  1.79137e-08  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2564  CDS  NC_009052  3006092  3007825  1734  ATP-dependent protease  YP_001050926  decreased coverage  1.55632e-06  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2613  CDS  NC_009052  3056073  3056867  795  hypothetical protein  YP_001050975  decreased coverage  1.75451e-06  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2715  CDS  NC_009052  3185046  3185858  813  exonuclease III  YP_001051072  decreased coverage  2.24276e-07  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2728  CDS  NC_009052  3199988  3200392  405  hypothetical protein  YP_001051084  decreased coverage  9.43165e-07  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2774  CDS  NC_009052  3260566  3261579  1014  RND family efflux transporter MFP subunit  YP_001051130  decreased coverage  3.48854e-07  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2786  CDS  NC_009052  3275559  3275891  333  preprotein translocase subunit YajC  YP_001051142  decreased coverage  4.16487e-09  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2787  CDS  NC_009052  3275918  3277042  1125  queuine tRNA-ribosyltransferase  YP_001051143  decreased coverage  1.35544e-07  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2847  CDS  NC_009052  3354856  3355605  750  electron transfer flavoprotein alpha/beta-subunit  YP_001051201  decreased coverage  7.62035e-06  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2859  CDS  NC_009052  3368076  3369200  1125  patatin  YP_001051212  decreased coverage  2.3249e-06  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2860  CDS  NC_009052  3369397  3369636  240  hypothetical protein  YP_001051213  decreased coverage  6.66628e-08  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2894  CDS  NC_009052  3408002  3408508  507  transcriptional acivator RfaH  YP_001051245  decreased coverage  2.45267e-05  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2895  CDS  NC_009052  3408984  3410489  1506  amino acid/peptide transporter  YP_001051246  decreased coverage  5.44318e-07  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_2991  CDS  NC_009052  3518373  3519443  1071  hypothetical protein  YP_001051342  decreased coverage  0.000645272  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_3012  CDS  NC_009052  3539818  3540408  591  OmpA/MotB domain-containing protein  YP_001051363  decreased coverage  1.26863e-07  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_3026  CDS  NC_009052  3550683  3551501  819  pyrroline-5-carboxylate reductase  YP_001051377  decreased coverage  1.30483e-05  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_3027  CDS  NC_009052  3551550  3552098  549  protein of unknown function YGGT  YP_001051378  decreased coverage  5.0243e-06  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_3028  CDS  NC_009052  3552098  3552397  300  hypothetical protein  YP_001051379  decreased coverage  9.74093e-06  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_3039  CDS  NC_009052  3563227  3564318  1092  A/G-specific adenine glycosylase  YP_001051390  decreased coverage  4.95773e-05  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_3040  CDS  NC_009052  3564321  3564599  279  hypothetical protein  YP_001051391  decreased coverage  4.74974e-07  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_3041  CDS  NC_009052  3564686  3565261  576  hypothetical protein  YP_001051392  decreased coverage  7.49458e-06  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_3042  CDS  NC_009052  3565266  3565817  552  cytochrome B561  YP_001051393  decreased coverage  6.18987e-06  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_3084  CDS  NC_009052  3606753  3607538  786  ROK family protein  YP_001051434  decreased coverage  0.00178322  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_3113  CDS  NC_009052  3645414  3645611  198  carbon storage regulator  YP_001051463  decreased coverage  1.81865e-09  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_3128  CDS  NC_009052  3662823  3664460  1638  CTP synthetase  YP_001051478  decreased coverage  1.12535e-06  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_3244  CDS  NC_009052  3803327  3804664  1338  phosphoglucosamine mutase  YP_001051593  decreased coverage  2.20965e-07  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_3291  CDS  NC_009052  3853039  3853986  948  3'-5' exonuclease  YP_001051640  decreased coverage  3.49721e-05  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_3307  CDS  NC_009052  3873173  3873790  618  peptidylprolyl isomerase FKBP-type  YP_001051656  decreased coverage  8.11964e-09  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_3318  CDS  NC_009052  3882517  3883650  1134  chaperone protein DnaJ  YP_001051665  decreased coverage  0.00186939  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_3319  CDS  NC_009052  3883761  3885680  1920  molecular chaperone DnaK  YP_001051666  decreased coverage  0.00591214  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_3395  CDS  NC_009052  3975257  3976123  867  hypothetical protein  YP_001051741  decreased coverage  4.2069e-08  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_3427  CDS  NC_009052  4017289  4018203  915  ErfK/YbiS/YcfS/YnhG family protein  YP_001051773  decreased coverage  1.29394e-05  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_3445  CDS  NC_009052  4038937  4041792  2856  bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase  YP_001051791  decreased coverage  0.000169018  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_3446  CDS  NC_009052  4042031  4043005  975  hypothetical protein  YP_001051792  decreased coverage  0.000247732  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_3491  CDS  NC_009052  4091391  4092305  915  glutamate--tRNA ligase  YP_001051837  decreased coverage  5.45607e-08  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_3524  CDS  NC_009052  4144091  4144747  657  hypothetical protein  YP_001051870  decreased coverage  2.04925e-08  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_3611  CDS  NC_009052  4237297  4237983  687  replication P family protein  YP_001051955  decreased coverage  3.84239e-05  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_3612  CDS  NC_009052  4237980  4238729  750  putative replication protein  YP_001051956  decreased coverage  4.25732e-05  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_3645  CDS  NC_009052  4266553  4267995  1443  major facilitator transporter  YP_001051989  decreased coverage  5.1219e-06  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_3753  CDS  NC_009052  4404211  4404915  705  single-strand binding protein  YP_001052096  decreased coverage  1.1541e-06  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
Sbal_3814  CDS  NC_009052  4479460  4480941  1482  outer membrane efflux protein  YP_001052154  decreased coverage  4.40013e-05  n/a    Shewanella baltica OS155  Bacteria 
 
 
-
 
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