| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal_2406 |
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| Symbol | |
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| ID | 4845460 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS155 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009052 |
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| Strand | + |
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| Start bp | 2795625 |
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| End bp | 2799113 |
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| Gene Length | 3489 bp |
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| Protein Length | 1162 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640119629 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001050768 |
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| Protein GI | 126174619 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00482386 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTCACA TATCAGCCCT AACGCCGCCA GCCGTCAAAA ATGGCAATCA AATTCAGACT
CTGTCCACTG TGGGCGGCGT TTGCCAAGCA GTTACACTCG CCAGTTTAGC GCGTCAACAT
AAGGGGACGA CCTTAGTTGT CACCAGTGAT ACGCCAAGCG CCTTAAGCTT AGAGCTAGAG
CTGAGTTATT TACTCAGTAA AACAGGCATT AAGGTCAGAT TATTCCCTGA CCGCGAAACC
TTGCCCTACG ACAGTTTTTC GCCCCATCAG GATTTGATCT CCCAACGACT CGAAACCCTG
TCGCAGCTGT CTCAAATTGA GCAAAACATC GTTATCGTGC CCGTCACGAC CTTAATGATG
CGCCTGCCAC CTAAGGCCTA TTTAAGCGCT AACGTGTTTA TGCTGAAAAA AGGTGATAGC
TACAAATTAC ACGATGTACG CCAGCATTTA ACCGACACTG GCTACCATTC AGTTGAACAA
GTGTATGAAC ACGGCGAGTT TGCCATTCGC GGCTCGATTC TGGATATCTT CCCAACTGGG
ATGAATATGC CACTGCGCAT CGAGCTATTC GATGAAGAAG TGGAAACCAT CCGCCATTTT
GATCCTGAAA CCCAACGCTC ATTGCAACCT GTCGACTCGA TTCGCCTATT GCCCGCGAAG
GAATTTCCGA CCGACAGCTC AGCCATCGAA GGCTTTAGAC AAAGATACCG TCGCCGTTTT
GAAGTCATAG TCAAAGAGCC AGAATCAGTT TATCAGCTGG TGAGCCGCAA CTTGATGCCG
GCGGGGATAG AAAACTATCT GCCGCTGTTT TTTGATGACA CAGCCACCCT ATTCGATTAC
TTGCCCAAGG ACACTCAGTT AGTCACTTTA GGCGATATCG AAAAGTCGGC GCGCGCACAT
CTGCAAGAAG TCGAACATCG CTATCAAGAC AGGCGCGTCG ATCCACTGCG GCCGCTACTG
GCGCCTAAAG AGCTGTATTT ACTCATTGAA GAGTTATTTG CCGCCTTTAA ACCGCTACCA
CGTTACCAAA TGCACGTGCC GACAGATGGC ACTGAAACGA CAAAAGCTGT GGTTATTGCC
GCCAGCACCC TGCCCGATAT CAGCGCCAAC CATAAATTAA AGCAACCGCT GTTAGCGCTA
CAAGATTATG CCAGCAGCGC CAAACGCATG TTGTTTAGTG CCGAGTCCGA GGGTCGCCGC
GAAGCGCTGC TTGAATTACT CGCTAAAATT CAGTTAAAAC CTGCGCAGTT TAACCATTTT
GATGAATTTA TTCAAAGTGA TGCCAAGTTA GGCCTTATCG TGTCGCCGCT GTCACGCGGT
TGTTTGCTGC AGATCAGCGC CAAAGATGGC ATCAGTATCA TTTGTGAAAC TGAGCTCTTC
GGCCATCGAA TTTCCCAGCA ACGTCGCCGT GAAAAACAGC GCCAGATCAG TAACGACGCC
CTGATTAAAA ACTTGGCCGA GCTCAAAGTC GGCCAGCCCA TTGTGCATTT AGAACACGGT
GTTGCCCTCT ACAAAGGCTT AGTCACGCTA GATACAGGCG GACTGGTCGC TGAATACCTG
CAATTGGAAT ACGCTGGCGG TGACAAACTG TATGTGCCAG TGTCTTCATT GCACCTTATC
AGCCGCTACA GTGTTGGCGC CGACGAAGAC GCCCACTTAA ATAAACTCGG CAATGAGACC
TGGGCTAAAG CCAAGAAAAA AGCCATTGAA AAAATCCGCG ACGTCGCGGC CGAGCTGCTC
GATGTCTACG CTCGTCGCCA ATCTCGTCCC GGCGAAAGCT GCGAGATTGA CGAAGAAGAA
TATGCCCAAT TCGCTCGCGG TTTCCCCTTC GAGGAAACCG TCGATCAAGA AAGCGCCATC
ATCGCCGTAT TAGCCGATAT GCAATCGCCA ACCGCCATGG ACAGATTAGT CTGTGGCGAT
GTGGGCTTTG GTAAAACCGA AGTCGCCATG CGCGCCGCCT TTGTGGCCGT CAACGCCGGT
AAACAAGTGG TCGTGCTGGT CCCGACCACA TTGCTTGCCC AGCAACACTA TGAAAACTTT
AAAGACAGAT TTGCCGACTG GCCCGTGGTC ACCGAAGTGA TGTCACGCTT TCGCACCGCC
AAAGAGCAGA CTCAAGTGCT ACAGCAATTG GAAGAAGGCA AAGTCGATAT CGTTATCGGT
ACCCACAAGT TATTGCAATC TGAGGCCAAG TTTGAAAACT TAGGCCTACT GATCATCGAC
GAAGAACACA GATTTGGTGT GCGTCAGAAA GAGAAAATCA AGGCACTGCG TGCCAACGTC
GATATCTTAA CTCTGACCGC AACGCCTATT CCACGGACCT TAAATATGGC CATGTCGGGC
ATGCGCGATT TATCGATTAT CGCCACCCCG CCCGCCAAAC GTTTAGCGGT AAAAACCTTT
GTGCGCGAGT CCGATCCTGC AACCGTGCGC GAGGCCATTT TGCGGGAAAT TCTCCGTGGC
GGCCAAGTGT ATTACCTGCA CAATAATGTT GAAAGTATTG AAAAATGTGC CCAAGGCATT
ATCGATTTAC TGCCAGAAGC ACGGGTAGTC GTCGCCCACG GTCAAATGCG TGAACGCGAC
CTTGAGCGGG TGATGTCTGA CTTTTATCAC CAAAGATTCA ACGTGTTAGT CTGTACCACT
ATTATCGAAA CCGGTATCGA CGTCCCGAGT GCCAACACCA TTATTATTGA GCGCGCCGAT
ACCTTTGGTC TGGCGCAGTT ACACCAATTA CGCGGCCGCG TCGGACGCTC GCACCATCAG
GCTTATGCCT ATTTGATGAC GCCGCATCCC AAACGTATGA CCCCAGATGC GCGTAAACGT
TTAGAAGCCA TTGATGCCCT TGAAGATCTC GGTGCAGGCT TTATGCTCGC GACCCAAGAT
TTGGAGATCC GCGGTGCAGG TGAACTCTTA GGTGATGAGC AGAGCGGCCA TATTTCGAAA
ATTGGTTTTA GCTTATACAT GGAAATGCTC GAAGCGGCAG TCAAAGCCTT AAAACAAGGC
AAAGAGCCAT CGCTGGCGCA AATGCTCAAT CAGCAATGCG AGATTGAACT GCGTATCCCC
GCCCTGCTGC CTGAGGCCTA TGTGAGCGAC GTGAATATTC GTCTATCGCT CTATAAACGT
ATCGCAGGTT GCGAAACCGA AGCGGCGCTT GATGAGTTAA AAGTCGAATT GATCGACCGT
TTTGGCCTAT TACCCGAACC GACGCGCAAC TTAATGGAAA TGACCCTCTA TAAACATGAG
GCGACTCGCT TAGGGGCGAC TAAAATAGAA GTGCACAGTA AAGGTGGCAG CATCGAATTT
AGTCATGATC ACGTCATCGA TCCTATGTTT ATTATTGGAT TACTCCAAAG CCAGCCACAA
ATCTATCGAA TGGAAGGACC GAATAAGTTA AAGTTCAGCC TTGCGGCCGA AACCAGCAAA
GACAGGCTCG CTTTAGTGAA ACTCTTGCTC GAACAATTAT CGCAACATCG TCTTGGAGAT
AATAAATAG
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| Protein sequence | MTHISALTPP AVKNGNQIQT LSTVGGVCQA VTLASLARQH KGTTLVVTSD TPSALSLELE
LSYLLSKTGI KVRLFPDRET LPYDSFSPHQ DLISQRLETL SQLSQIEQNI VIVPVTTLMM
RLPPKAYLSA NVFMLKKGDS YKLHDVRQHL TDTGYHSVEQ VYEHGEFAIR GSILDIFPTG
MNMPLRIELF DEEVETIRHF DPETQRSLQP VDSIRLLPAK EFPTDSSAIE GFRQRYRRRF
EVIVKEPESV YQLVSRNLMP AGIENYLPLF FDDTATLFDY LPKDTQLVTL GDIEKSARAH
LQEVEHRYQD RRVDPLRPLL APKELYLLIE ELFAAFKPLP RYQMHVPTDG TETTKAVVIA
ASTLPDISAN HKLKQPLLAL QDYASSAKRM LFSAESEGRR EALLELLAKI QLKPAQFNHF
DEFIQSDAKL GLIVSPLSRG CLLQISAKDG ISIICETELF GHRISQQRRR EKQRQISNDA
LIKNLAELKV GQPIVHLEHG VALYKGLVTL DTGGLVAEYL QLEYAGGDKL YVPVSSLHLI
SRYSVGADED AHLNKLGNET WAKAKKKAIE KIRDVAAELL DVYARRQSRP GESCEIDEEE
YAQFARGFPF EETVDQESAI IAVLADMQSP TAMDRLVCGD VGFGKTEVAM RAAFVAVNAG
KQVVVLVPTT LLAQQHYENF KDRFADWPVV TEVMSRFRTA KEQTQVLQQL EEGKVDIVIG
THKLLQSEAK FENLGLLIID EEHRFGVRQK EKIKALRANV DILTLTATPI PRTLNMAMSG
MRDLSIIATP PAKRLAVKTF VRESDPATVR EAILREILRG GQVYYLHNNV ESIEKCAQGI
IDLLPEARVV VAHGQMRERD LERVMSDFYH QRFNVLVCTT IIETGIDVPS ANTIIIERAD
TFGLAQLHQL RGRVGRSHHQ AYAYLMTPHP KRMTPDARKR LEAIDALEDL GAGFMLATQD
LEIRGAGELL GDEQSGHISK IGFSLYMEML EAAVKALKQG KEPSLAQMLN QQCEIELRIP
ALLPEAYVSD VNIRLSLYKR IAGCETEAAL DELKVELIDR FGLLPEPTRN LMEMTLYKHE
ATRLGATKIE VHSKGGSIEF SHDHVIDPMF IIGLLQSQPQ IYRMEGPNKL KFSLAAETSK
DRLALVKLLL EQLSQHRLGD NK
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