Gene Sbal_2406 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbal_2406 
Symbol 
ID4845460 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS155 
KingdomBacteria 
Replicon accessionNC_009052 
Strand
Start bp2795625 
End bp2799113 
Gene Length3489 bp 
Protein Length1162 aa 
Translation table11 
GC content50% 
IMG OID640119629 
Producttranscription-repair coupling factor 
Protein accessionYP_001050768 
Protein GI126174619 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG1197] Transcription-repair coupling factor (superfamily II helicase) 
TIGRFAM ID[TIGR00580] transcription-repair coupling factor (mfd) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00482386 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTCACA TATCAGCCCT AACGCCGCCA GCCGTCAAAA ATGGCAATCA AATTCAGACT 
CTGTCCACTG TGGGCGGCGT TTGCCAAGCA GTTACACTCG CCAGTTTAGC GCGTCAACAT
AAGGGGACGA CCTTAGTTGT CACCAGTGAT ACGCCAAGCG CCTTAAGCTT AGAGCTAGAG
CTGAGTTATT TACTCAGTAA AACAGGCATT AAGGTCAGAT TATTCCCTGA CCGCGAAACC
TTGCCCTACG ACAGTTTTTC GCCCCATCAG GATTTGATCT CCCAACGACT CGAAACCCTG
TCGCAGCTGT CTCAAATTGA GCAAAACATC GTTATCGTGC CCGTCACGAC CTTAATGATG
CGCCTGCCAC CTAAGGCCTA TTTAAGCGCT AACGTGTTTA TGCTGAAAAA AGGTGATAGC
TACAAATTAC ACGATGTACG CCAGCATTTA ACCGACACTG GCTACCATTC AGTTGAACAA
GTGTATGAAC ACGGCGAGTT TGCCATTCGC GGCTCGATTC TGGATATCTT CCCAACTGGG
ATGAATATGC CACTGCGCAT CGAGCTATTC GATGAAGAAG TGGAAACCAT CCGCCATTTT
GATCCTGAAA CCCAACGCTC ATTGCAACCT GTCGACTCGA TTCGCCTATT GCCCGCGAAG
GAATTTCCGA CCGACAGCTC AGCCATCGAA GGCTTTAGAC AAAGATACCG TCGCCGTTTT
GAAGTCATAG TCAAAGAGCC AGAATCAGTT TATCAGCTGG TGAGCCGCAA CTTGATGCCG
GCGGGGATAG AAAACTATCT GCCGCTGTTT TTTGATGACA CAGCCACCCT ATTCGATTAC
TTGCCCAAGG ACACTCAGTT AGTCACTTTA GGCGATATCG AAAAGTCGGC GCGCGCACAT
CTGCAAGAAG TCGAACATCG CTATCAAGAC AGGCGCGTCG ATCCACTGCG GCCGCTACTG
GCGCCTAAAG AGCTGTATTT ACTCATTGAA GAGTTATTTG CCGCCTTTAA ACCGCTACCA
CGTTACCAAA TGCACGTGCC GACAGATGGC ACTGAAACGA CAAAAGCTGT GGTTATTGCC
GCCAGCACCC TGCCCGATAT CAGCGCCAAC CATAAATTAA AGCAACCGCT GTTAGCGCTA
CAAGATTATG CCAGCAGCGC CAAACGCATG TTGTTTAGTG CCGAGTCCGA GGGTCGCCGC
GAAGCGCTGC TTGAATTACT CGCTAAAATT CAGTTAAAAC CTGCGCAGTT TAACCATTTT
GATGAATTTA TTCAAAGTGA TGCCAAGTTA GGCCTTATCG TGTCGCCGCT GTCACGCGGT
TGTTTGCTGC AGATCAGCGC CAAAGATGGC ATCAGTATCA TTTGTGAAAC TGAGCTCTTC
GGCCATCGAA TTTCCCAGCA ACGTCGCCGT GAAAAACAGC GCCAGATCAG TAACGACGCC
CTGATTAAAA ACTTGGCCGA GCTCAAAGTC GGCCAGCCCA TTGTGCATTT AGAACACGGT
GTTGCCCTCT ACAAAGGCTT AGTCACGCTA GATACAGGCG GACTGGTCGC TGAATACCTG
CAATTGGAAT ACGCTGGCGG TGACAAACTG TATGTGCCAG TGTCTTCATT GCACCTTATC
AGCCGCTACA GTGTTGGCGC CGACGAAGAC GCCCACTTAA ATAAACTCGG CAATGAGACC
TGGGCTAAAG CCAAGAAAAA AGCCATTGAA AAAATCCGCG ACGTCGCGGC CGAGCTGCTC
GATGTCTACG CTCGTCGCCA ATCTCGTCCC GGCGAAAGCT GCGAGATTGA CGAAGAAGAA
TATGCCCAAT TCGCTCGCGG TTTCCCCTTC GAGGAAACCG TCGATCAAGA AAGCGCCATC
ATCGCCGTAT TAGCCGATAT GCAATCGCCA ACCGCCATGG ACAGATTAGT CTGTGGCGAT
GTGGGCTTTG GTAAAACCGA AGTCGCCATG CGCGCCGCCT TTGTGGCCGT CAACGCCGGT
AAACAAGTGG TCGTGCTGGT CCCGACCACA TTGCTTGCCC AGCAACACTA TGAAAACTTT
AAAGACAGAT TTGCCGACTG GCCCGTGGTC ACCGAAGTGA TGTCACGCTT TCGCACCGCC
AAAGAGCAGA CTCAAGTGCT ACAGCAATTG GAAGAAGGCA AAGTCGATAT CGTTATCGGT
ACCCACAAGT TATTGCAATC TGAGGCCAAG TTTGAAAACT TAGGCCTACT GATCATCGAC
GAAGAACACA GATTTGGTGT GCGTCAGAAA GAGAAAATCA AGGCACTGCG TGCCAACGTC
GATATCTTAA CTCTGACCGC AACGCCTATT CCACGGACCT TAAATATGGC CATGTCGGGC
ATGCGCGATT TATCGATTAT CGCCACCCCG CCCGCCAAAC GTTTAGCGGT AAAAACCTTT
GTGCGCGAGT CCGATCCTGC AACCGTGCGC GAGGCCATTT TGCGGGAAAT TCTCCGTGGC
GGCCAAGTGT ATTACCTGCA CAATAATGTT GAAAGTATTG AAAAATGTGC CCAAGGCATT
ATCGATTTAC TGCCAGAAGC ACGGGTAGTC GTCGCCCACG GTCAAATGCG TGAACGCGAC
CTTGAGCGGG TGATGTCTGA CTTTTATCAC CAAAGATTCA ACGTGTTAGT CTGTACCACT
ATTATCGAAA CCGGTATCGA CGTCCCGAGT GCCAACACCA TTATTATTGA GCGCGCCGAT
ACCTTTGGTC TGGCGCAGTT ACACCAATTA CGCGGCCGCG TCGGACGCTC GCACCATCAG
GCTTATGCCT ATTTGATGAC GCCGCATCCC AAACGTATGA CCCCAGATGC GCGTAAACGT
TTAGAAGCCA TTGATGCCCT TGAAGATCTC GGTGCAGGCT TTATGCTCGC GACCCAAGAT
TTGGAGATCC GCGGTGCAGG TGAACTCTTA GGTGATGAGC AGAGCGGCCA TATTTCGAAA
ATTGGTTTTA GCTTATACAT GGAAATGCTC GAAGCGGCAG TCAAAGCCTT AAAACAAGGC
AAAGAGCCAT CGCTGGCGCA AATGCTCAAT CAGCAATGCG AGATTGAACT GCGTATCCCC
GCCCTGCTGC CTGAGGCCTA TGTGAGCGAC GTGAATATTC GTCTATCGCT CTATAAACGT
ATCGCAGGTT GCGAAACCGA AGCGGCGCTT GATGAGTTAA AAGTCGAATT GATCGACCGT
TTTGGCCTAT TACCCGAACC GACGCGCAAC TTAATGGAAA TGACCCTCTA TAAACATGAG
GCGACTCGCT TAGGGGCGAC TAAAATAGAA GTGCACAGTA AAGGTGGCAG CATCGAATTT
AGTCATGATC ACGTCATCGA TCCTATGTTT ATTATTGGAT TACTCCAAAG CCAGCCACAA
ATCTATCGAA TGGAAGGACC GAATAAGTTA AAGTTCAGCC TTGCGGCCGA AACCAGCAAA
GACAGGCTCG CTTTAGTGAA ACTCTTGCTC GAACAATTAT CGCAACATCG TCTTGGAGAT
AATAAATAG
 
Protein sequence
MTHISALTPP AVKNGNQIQT LSTVGGVCQA VTLASLARQH KGTTLVVTSD TPSALSLELE 
LSYLLSKTGI KVRLFPDRET LPYDSFSPHQ DLISQRLETL SQLSQIEQNI VIVPVTTLMM
RLPPKAYLSA NVFMLKKGDS YKLHDVRQHL TDTGYHSVEQ VYEHGEFAIR GSILDIFPTG
MNMPLRIELF DEEVETIRHF DPETQRSLQP VDSIRLLPAK EFPTDSSAIE GFRQRYRRRF
EVIVKEPESV YQLVSRNLMP AGIENYLPLF FDDTATLFDY LPKDTQLVTL GDIEKSARAH
LQEVEHRYQD RRVDPLRPLL APKELYLLIE ELFAAFKPLP RYQMHVPTDG TETTKAVVIA
ASTLPDISAN HKLKQPLLAL QDYASSAKRM LFSAESEGRR EALLELLAKI QLKPAQFNHF
DEFIQSDAKL GLIVSPLSRG CLLQISAKDG ISIICETELF GHRISQQRRR EKQRQISNDA
LIKNLAELKV GQPIVHLEHG VALYKGLVTL DTGGLVAEYL QLEYAGGDKL YVPVSSLHLI
SRYSVGADED AHLNKLGNET WAKAKKKAIE KIRDVAAELL DVYARRQSRP GESCEIDEEE
YAQFARGFPF EETVDQESAI IAVLADMQSP TAMDRLVCGD VGFGKTEVAM RAAFVAVNAG
KQVVVLVPTT LLAQQHYENF KDRFADWPVV TEVMSRFRTA KEQTQVLQQL EEGKVDIVIG
THKLLQSEAK FENLGLLIID EEHRFGVRQK EKIKALRANV DILTLTATPI PRTLNMAMSG
MRDLSIIATP PAKRLAVKTF VRESDPATVR EAILREILRG GQVYYLHNNV ESIEKCAQGI
IDLLPEARVV VAHGQMRERD LERVMSDFYH QRFNVLVCTT IIETGIDVPS ANTIIIERAD
TFGLAQLHQL RGRVGRSHHQ AYAYLMTPHP KRMTPDARKR LEAIDALEDL GAGFMLATQD
LEIRGAGELL GDEQSGHISK IGFSLYMEML EAAVKALKQG KEPSLAQMLN QQCEIELRIP
ALLPEAYVSD VNIRLSLYKR IAGCETEAAL DELKVELIDR FGLLPEPTRN LMEMTLYKHE
ATRLGATKIE VHSKGGSIEF SHDHVIDPMF IIGLLQSQPQ IYRMEGPNKL KFSLAAETSK
DRLALVKLLL EQLSQHRLGD NK