More than 300 homologs were found in PanDaTox collection
for query gene Swit_2901 on replicon NC_009511
Organism: Sphingomonas wittichii RW1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009511  Swit_2901  cold-shock DNA-binding protein family protein  100 
 
 
288 aa  530  1e-150  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.654674 
 
 
-
 
NC_007794  Saro_3142  cold-shock DNA-binding protein family protein  75.88 
 
 
267 aa  254  1.0000000000000001e-66  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.11906  n/a   
 
 
-
 
NC_008048  Sala_2344  cold-shock DNA-binding domain-containing protein  74.42 
 
 
249 aa  245  8e-64  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.157339 
 
 
-
 
NC_010338  Caul_3723  cold-shock DNA-binding domain-containing protein  48.31 
 
 
179 aa  129  6e-29  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_0105  cold-shock DNA-binding domain protein  40.76 
 
 
204 aa  99.4  5e-20  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.310654  normal  0.194385 
 
 
-
 
NC_009507  Swit_5339  cold-shock DNA-binding protein family protein  68.25 
 
 
71 aa  88.2  2e-16  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_1609  cold-shock protein, DNA-binding  33.72 
 
 
217 aa  88.2  2e-16  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0789892  normal  0.308571 
 
 
-
 
NC_007964  Nham_2142  cold-shock DNA-binding domain-containing protein  32.56 
 
 
217 aa  87.8  2e-16  Nitrobacter hamburgensis X14  Bacteria  normal  0.584578  n/a   
 
 
-
 
NC_009720  Xaut_4174  cold-shock DNA-binding domain-containing protein  34.44 
 
 
192 aa  87.4  2e-16  Xanthobacter autotrophicus Py2  Bacteria  normal  0.524647  normal  0.907911 
 
 
-
 
NC_013530  Xcel_0200  cold-shock DNA-binding domain protein  40.76 
 
 
311 aa  87  3e-16  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0333811  n/a   
 
 
-
 
NC_009719  Plav_2974  cold-shock DNA-binding domain-containing protein  33.97 
 
 
199 aa  87  3e-16  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.42307 
 
 
-
 
NC_008347  Mmar10_1185  cold-shock DNA-binding protein family protein  66.15 
 
 
69 aa  87  3e-16  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2005  cold-shock DNA-binding domain-containing protein  64.71 
 
 
69 aa  86.7  4e-16  Sinorhizobium medicae WSM419  Bacteria  normal  0.745199  normal 
 
 
-
 
NC_011365  Gdia_2681  cold-shock DNA-binding domain protein  64.06 
 
 
68 aa  86.7  5e-16  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.741556  normal 
 
 
-
 
NC_009621  Smed_5421  cold-shock DNA-binding domain-containing protein  64.62 
 
 
68 aa  85.9  7e-16  Sinorhizobium medicae WSM419  Bacteria  normal  0.14942  normal  0.64967 
 
 
-
 
NC_011666  Msil_0538  cold-shock DNA-binding domain protein  35.33 
 
 
217 aa  85.1  0.000000000000001  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_009511  Swit_4644  cold-shock DNA-binding protein family protein  63.08 
 
 
68 aa  85.1  0.000000000000001  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_2586  cold-shock DNA-binding protein family protein  64.52 
 
 
68 aa  85.1  0.000000000000001  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.765409  n/a   
 
 
-
 
NC_009720  Xaut_3214  cold-shock DNA-binding domain-containing protein  59.7 
 
 
68 aa  85.1  0.000000000000001  Xanthobacter autotrophicus Py2  Bacteria  normal  0.265865  normal 
 
 
-
 
NC_009719  Plav_3161  cold-shock DNA-binding domain-containing protein  64.62 
 
 
69 aa  84.3  0.000000000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.161902  normal  0.108125 
 
 
-
 
NC_008254  Meso_1909  cold-shock DNA-binding protein family protein  64.62 
 
 
69 aa  84.3  0.000000000000002  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_2279  cold-shock DNA-binding domain protein  38.04 
 
 
310 aa  83.6  0.000000000000003  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.703886  n/a   
 
 
-
 
NC_010510  Mrad2831_6274  cold-shock DNA-binding domain-containing protein  63.08 
 
 
69 aa  84  0.000000000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.517051  normal 
 
 
-
 
NC_009484  Acry_2842  cold-shock DNA-binding domain-containing protein  64.06 
 
 
68 aa  84  0.000000000000003  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1914  cold-shock DNA-binding protein family protein  59.38 
 
 
68 aa  82.8  0.000000000000006  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_2262  cold-shock DNA-binding domain-containing protein  37.06 
 
 
242 aa  82.8  0.000000000000007  Methylobacterium sp. 4-46  Bacteria  normal  hitchhiker  0.00533118 
 
 
-
 
NC_011004  Rpal_2801  cold-shock DNA-binding domain protein  32.88 
 
 
235 aa  82.4  0.000000000000008  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.674549  n/a   
 
 
-
 
NC_009505  BOV_0430  cold-shock family protein  63.24 
 
 
69 aa  82.4  0.000000000000009  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2199  cold-shock DNA-binding domain-containing protein  61.54 
 
 
67 aa  82.4  0.000000000000009  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.735899 
 
 
-
 
NC_009485  BBta_4038  cold-shock DNA-binding protein family protein  34.03 
 
 
217 aa  81.6  0.00000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0877657 
 
 
-
 
NC_007643  Rru_A1521  cold-shock DNA-binding protein family protein  58.21 
 
 
68 aa  82  0.00000000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.490356  n/a   
 
 
-
 
NC_007964  Nham_2034  cold-shock DNA-binding domain-containing protein  64.06 
 
 
67 aa  82  0.00000000000001  Nitrobacter hamburgensis X14  Bacteria  normal  0.465881  n/a   
 
 
-
 
NC_009720  Xaut_1556  cold-shock DNA-binding domain-containing protein  62.32 
 
 
70 aa  80.9  0.00000000000002  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2736  cold-shock DNA-binding domain-containing protein  32.48 
 
 
201 aa  81.3  0.00000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.634457 
 
 
-
 
NC_007406  Nwi_2375  cold-shock protein, DNA-binding  62.12 
 
 
69 aa  81.3  0.00000000000002  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.583398  normal 
 
 
-
 
NC_010511  M446_0381  cold-shock DNA-binding domain-containing protein  30.21 
 
 
204 aa  80.9  0.00000000000002  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.58799 
 
 
-
 
NC_010505  Mrad2831_5022  cold-shock DNA-binding domain-containing protein  64.52 
 
 
69 aa  81.3  0.00000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.499823  normal 
 
 
-
 
NC_010172  Mext_1893  cold-shock protein DNA-binding  67.27 
 
 
69 aa  81.3  0.00000000000002  Methylobacterium extorquens PA1  Bacteria  normal  0.208302  normal 
 
 
-
 
NC_010725  Mpop_3196  cold-shock DNA-binding domain protein  35.67 
 
 
181 aa  80.5  0.00000000000003  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_0142  cold shock protein  60 
 
 
74 aa  80.5  0.00000000000003  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011366  Rleg2_5655  cold-shock DNA-binding domain protein  63.08 
 
 
69 aa  80.5  0.00000000000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.313891  normal 
 
 
-
 
NC_007778  RPB_2938  cold-shock DNA-binding domain-containing protein  33.33 
 
 
221 aa  80.5  0.00000000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.645608  normal  0.339139 
 
 
-
 
NC_010510  Mrad2831_6033  cold-shock DNA-binding domain-containing protein  68.33 
 
 
69 aa  80.9  0.00000000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.263263  normal  0.0669471 
 
 
-
 
NC_007925  RPC_2791  cold-shock DNA-binding domain-containing protein  32.88 
 
 
220 aa  80.5  0.00000000000003  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.190915  normal  0.419031 
 
 
-
 
NC_007964  Nham_2750  cold-shock DNA-binding domain-containing protein  67.69 
 
 
69 aa  80.5  0.00000000000003  Nitrobacter hamburgensis X14  Bacteria  normal  0.33157  n/a   
 
 
-
 
NC_007964  Nham_2846  cold-shock DNA-binding domain-containing protein  64.06 
 
 
73 aa  80.5  0.00000000000003  Nitrobacter hamburgensis X14  Bacteria  normal  0.495681  n/a   
 
 
-
 
NC_012858  Rleg_6591  cold-shock DNA-binding domain protein  63.08 
 
 
69 aa  80.5  0.00000000000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  hitchhiker  0.00426867 
 
 
-
 
NC_011894  Mnod_0841  cold-shock DNA-binding domain protein  65.08 
 
 
69 aa  80.1  0.00000000000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_3306  cold-shock DNA-binding protein family protein  68.25 
 
 
69 aa  80.5  0.00000000000003  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_2065  cold-shock DNA-binding domain-containing protein  60 
 
 
68 aa  80.5  0.00000000000003  Paracoccus denitrificans PD1222  Bacteria  normal  hitchhiker  0.00142025 
 
 
-
 
NC_012853  Rleg_5928  cold-shock DNA-binding domain protein  64.62 
 
 
69 aa  80.5  0.00000000000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4458  cold-shock DNA-binding domain-containing protein  61.54 
 
 
69 aa  80.1  0.00000000000004  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_0769  cold-shock DNA-binding domain protein  62.12 
 
 
69 aa  80.1  0.00000000000004  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.218929 
 
 
-
 
NC_010511  M446_2980  cold-shock DNA-binding domain-containing protein  62.9 
 
 
73 aa  80.1  0.00000000000004  Methylobacterium sp. 4-46  Bacteria  decreased coverage  0.0073832  normal  0.0936276 
 
 
-
 
NC_010511  M446_5491  cold-shock DNA-binding domain-containing protein  62.5 
 
 
69 aa  79.7  0.00000000000005  Methylobacterium sp. 4-46  Bacteria  normal  0.599855  normal  0.0633447 
 
 
-
 
NC_007958  RPD_2530  cold-shock DNA-binding domain protein  33.33 
 
 
219 aa  79.7  0.00000000000005  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_0093  cold-shock DNA-binding domain protein  64.62 
 
 
69 aa  79.7  0.00000000000006  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.941798  normal 
 
 
-
 
NC_010172  Mext_3007  cold-shock protein DNA-binding  35.03 
 
 
202 aa  79.3  0.00000000000006  Methylobacterium extorquens PA1  Bacteria  normal  0.0372335  normal 
 
 
-
 
NC_008686  Pden_0954  cold-shock DNA-binding domain-containing protein  60.61 
 
 
68 aa  79.3  0.00000000000006  Paracoccus denitrificans PD1222  Bacteria  normal  0.631034  normal  0.812615 
 
 
-
 
NC_009621  Smed_5162  cold-shock DNA-binding domain-containing protein  64.52 
 
 
69 aa  79.3  0.00000000000007  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_5378  cold-shock DNA-binding domain-containing protein  65.62 
 
 
69 aa  79.3  0.00000000000007  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.260469 
 
 
-
 
NC_011894  Mnod_1882  cold-shock DNA-binding domain protein  32.48 
 
 
189 aa  79.3  0.00000000000007  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_3232  cold-shock DNA-binding domain protein  35.03 
 
 
181 aa  79.3  0.00000000000007  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.336817 
 
 
-
 
NC_010172  Mext_1892  cold-shock protein DNA-binding  63.16 
 
 
69 aa  79.3  0.00000000000007  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_4677  cold-shock DNA-binding domain protein  62.9 
 
 
69 aa  79  0.00000000000008  Methylobacterium populi BJ001  Bacteria  normal  0.403947  normal 
 
 
-
 
NC_010338  Caul_3209  cold-shock DNA-binding domain-containing protein  62.5 
 
 
67 aa  79  0.00000000000008  Caulobacter sp. K31  Bacteria  normal  normal  0.522557 
 
 
-
 
NC_004310  BR1492  cold-shock family protein  60 
 
 
69 aa  79  0.00000000000009  Brucella suis 1330  Bacteria  normal  0.136425  n/a   
 
 
-
 
NC_007964  Nham_0810  cold-shock DNA-binding domain-containing protein  63.08 
 
 
69 aa  79  0.00000000000009  Nitrobacter hamburgensis X14  Bacteria  normal  0.509144  n/a   
 
 
-
 
NC_011369  Rleg2_0078  cold-shock DNA-binding domain protein  63.08 
 
 
69 aa  78.6  0.0000000000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.19657  normal  0.176991 
 
 
-
 
NC_011666  Msil_1056  cold-shock DNA-binding domain protein  62.32 
 
 
70 aa  78.6  0.0000000000001  Methylocella silvestris BL2  Bacteria  n/a    normal  0.102694 
 
 
-
 
NC_007925  RPC_3705  cold-shock DNA-binding domain-containing protein  62.69 
 
 
70 aa  78.6  0.0000000000001  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.59949  normal 
 
 
-
 
NC_011369  Rleg2_0217  cold-shock DNA-binding domain protein  61.54 
 
 
69 aa  77.8  0.0000000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_0662  cold-shock DNA-binding domain-containing protein  64.91 
 
 
70 aa  77.4  0.0000000000002  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.662229 
 
 
-
 
NC_007406  Nwi_0311  cold-shock protein, DNA-binding  61.19 
 
 
68 aa  77.8  0.0000000000002  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.656988  normal 
 
 
-
 
NC_012850  Rleg_0246  cold-shock DNA-binding domain protein  61.54 
 
 
69 aa  77.8  0.0000000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.251668  normal 
 
 
-
 
NC_007778  RPB_1791  cold-shock DNA-binding domain-containing protein  63.49 
 
 
70 aa  77.8  0.0000000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.29852 
 
 
-
 
NC_007778  RPB_2176  cold-shock DNA-binding domain-containing protein  64.62 
 
 
69 aa  78.2  0.0000000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.141033  normal  0.0176419 
 
 
-
 
NC_010172  Mext_4164  cold-shock protein DNA-binding  63.33 
 
 
69 aa  77.4  0.0000000000002  Methylobacterium extorquens PA1  Bacteria  normal  0.593748  normal 
 
 
-
 
NC_011004  Rpal_4194  cold-shock DNA-binding domain protein  63.49 
 
 
70 aa  77.8  0.0000000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.69443  n/a   
 
 
-
 
NC_007958  RPD_3257  cold-shock protein, DNA-binding  64.62 
 
 
69 aa  78.2  0.0000000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0261895 
 
 
-
 
NC_007958  RPD_3513  cold-shock DNA-binding domain protein  63.49 
 
 
70 aa  77.8  0.0000000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0367  cold-shock DNA-binding domain-containing protein  62.5 
 
 
73 aa  78.2  0.0000000000002  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_4533  cold-shock DNA-binding domain protein  63.33 
 
 
69 aa  77.4  0.0000000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_7022  cold-shock DNA-binding protein family protein  63.49 
 
 
70 aa  77.8  0.0000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0599246  normal  0.604228 
 
 
-
 
NC_008254  Meso_2134  cold-shock DNA-binding protein family protein  61.54 
 
 
70 aa  78.2  0.0000000000002  Chelativorans sp. BNC1  Bacteria  normal  0.895111  n/a   
 
 
-
 
NC_011757  Mchl_1345  cold-shock DNA-binding domain protein  59.65 
 
 
69 aa  77.4  0.0000000000003  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.708004 
 
 
-
 
NC_007493  RSP_2024  cold-shock DNA-binding protein family protein  59.38 
 
 
68 aa  77  0.0000000000003  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_0398  cold-shock DNA-binding domain-containing protein  59.7 
 
 
68 aa  77.4  0.0000000000003  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_2533  cold-shock DNA-binding domain-containing protein  61.54 
 
 
69 aa  77  0.0000000000003  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_2135  cold-shock DNA-binding protein family protein  61.54 
 
 
70 aa  77.4  0.0000000000003  Chelativorans sp. BNC1  Bacteria  normal  0.24851  n/a   
 
 
-
 
NC_009485  BBta_1730  cold-shock DNA-binding protein family protein  60 
 
 
71 aa  77  0.0000000000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.244991 
 
 
-
 
NC_009505  BOV_1446  cold-shock family protein  61.4 
 
 
105 aa  77  0.0000000000003  Brucella ovis ATCC 25840  Bacteria  normal  0.215876  n/a   
 
 
-
 
NC_009049  Rsph17029_0735  cold-shock DNA-binding domain-containing protein  59.38 
 
 
68 aa  77  0.0000000000003  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.976411  normal  0.373537 
 
 
-
 
NC_010172  Mext_1185  cold-shock protein DNA-binding  59.65 
 
 
69 aa  77.4  0.0000000000003  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0202677 
 
 
-
 
NC_011004  Rpal_1364  cold-shock DNA-binding domain protein  60 
 
 
71 aa  77  0.0000000000004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.185476  n/a   
 
 
-
 
NC_007958  RPD_1283  cold-shock DNA-binding domain protein  60 
 
 
70 aa  76.6  0.0000000000004  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.165738 
 
 
-
 
NC_007964  Nham_3148  cold-shock DNA-binding domain-containing protein  60 
 
 
71 aa  77  0.0000000000004  Nitrobacter hamburgensis X14  Bacteria  normal  0.0858327  n/a   
 
 
-
 
NC_009667  Oant_1676  cold-shock DNA-binding domain-containing protein  57.58 
 
 
69 aa  76.6  0.0000000000004  Ochrobactrum anthropi ATCC 49188  Bacteria  decreased coverage  0.00586625  n/a   
 
 
-
 
NC_011004  Rpal_3878  cold-shock DNA-binding domain protein  64.62 
 
 
69 aa  77  0.0000000000004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_0886  cold-shock protein DNA-binding  59.7 
 
 
69 aa  76.6  0.0000000000004  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0757124 
 
 
-
 
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