More than 300 homologs were found in PanDaTox collection
for query gene Xcel_0200 on replicon NC_013530
Organism: Xylanimonas cellulosilytica DSM 15894



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013530  Xcel_0200  cold-shock DNA-binding domain protein  100 
 
 
311 aa  597  1e-169  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0333811  n/a   
 
 
-
 
NC_014151  Cfla_0312  cold-shock DNA-binding domain protein  70.98 
 
 
418 aa  403  1e-111  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.147611  hitchhiker  0.000223606 
 
 
-
 
NC_013521  Sked_04410  cold shock domain protein CspD  70.25 
 
 
317 aa  390  1e-107  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.528564 
 
 
-
 
NC_013757  Gobs_2279  cold-shock DNA-binding domain protein  35.74 
 
 
310 aa  134  1.9999999999999998e-30  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.703886  n/a   
 
 
-
 
NC_009720  Xaut_0192  cold-shock DNA-binding domain-containing protein  33.72 
 
 
241 aa  92.8  6e-18  Xanthobacter autotrophicus Py2  Bacteria  normal  0.171575  normal 
 
 
-
 
NC_008048  Sala_2344  cold-shock DNA-binding domain-containing protein  42.11 
 
 
249 aa  90.9  2e-17  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.157339 
 
 
-
 
NC_010338  Caul_3723  cold-shock DNA-binding domain-containing protein  37.65 
 
 
179 aa  89.7  5e-17  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_0105  cold-shock DNA-binding domain protein  34.71 
 
 
204 aa  88.2  2e-16  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.310654  normal  0.194385 
 
 
-
 
NC_011894  Mnod_0346  cold-shock DNA-binding domain protein  32.98 
 
 
242 aa  87.8  2e-16  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.631485  n/a   
 
 
-
 
NC_011666  Msil_0538  cold-shock DNA-binding domain protein  35.47 
 
 
217 aa  87.4  3e-16  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007643  Rru_A3462  cold-shock DNA-binding protein family protein  31.03 
 
 
210 aa  86.7  4e-16  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_1550  cold-shock DNA-binding domain protein  34.19 
 
 
192 aa  85.9  7e-16  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.666809 
 
 
-
 
NC_012850  Rleg_1744  cold-shock DNA-binding domain protein  34.19 
 
 
192 aa  85.9  8e-16  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  hitchhiker  0.000196433  normal  0.915282 
 
 
-
 
NC_011989  Avi_2286  cold shock protein  33.97 
 
 
192 aa  85.1  0.000000000000001  Agrobacterium vitis S4  Bacteria  decreased coverage  0.00549771  n/a   
 
 
-
 
NC_009636  Smed_1449  cold-shock DNA-binding domain-containing protein  33.55 
 
 
192 aa  85.1  0.000000000000001  Sinorhizobium medicae WSM419  Bacteria  normal  0.0373427  hitchhiker  0.000349803 
 
 
-
 
NC_010511  M446_2262  cold-shock DNA-binding domain-containing protein  32.63 
 
 
242 aa  85.1  0.000000000000001  Methylobacterium sp. 4-46  Bacteria  normal  hitchhiker  0.00533118 
 
 
-
 
NC_007802  Jann_2474  cold-shock DNA-binding protein family protein  37.42 
 
 
181 aa  82.4  0.000000000000009  Jannaschia sp. CCS1  Bacteria  normal  0.251539  normal  0.0229175 
 
 
-
 
NC_009720  Xaut_4174  cold-shock DNA-binding domain-containing protein  36.54 
 
 
192 aa  82  0.00000000000001  Xanthobacter autotrophicus Py2  Bacteria  normal  0.524647  normal  0.907911 
 
 
-
 
NC_009511  Swit_2557  cold-shock DNA-binding protein family protein  32.08 
 
 
198 aa  81.6  0.00000000000001  Sphingomonas wittichii RW1  Bacteria  normal  0.557959  normal  0.17098 
 
 
-
 
NC_009487  SaurJH9_1463  cold-shock DNA-binding domain-containing protein  66.15 
 
 
66 aa  80.9  0.00000000000002  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.302037  n/a   
 
 
-
 
NC_009719  Plav_2974  cold-shock DNA-binding domain-containing protein  35.44 
 
 
199 aa  81.6  0.00000000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.42307 
 
 
-
 
NC_007794  Saro_3142  cold-shock DNA-binding protein family protein  36.48 
 
 
267 aa  81.3  0.00000000000002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.11906  n/a   
 
 
-
 
NC_010511  M446_0381  cold-shock DNA-binding domain-containing protein  31.77 
 
 
204 aa  81.3  0.00000000000002  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.58799 
 
 
-
 
NC_009632  SaurJH1_1492  cold-shock protein DNA-binding  66.15 
 
 
66 aa  80.9  0.00000000000002  Staphylococcus aureus subsp. aureus JH1  Bacteria  hitchhiker  0.0000192979  n/a   
 
 
-
 
NC_011004  Rpal_2801  cold-shock DNA-binding domain protein  33.12 
 
 
235 aa  80.5  0.00000000000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.674549  n/a   
 
 
-
 
NC_011894  Mnod_1882  cold-shock DNA-binding domain protein  32.37 
 
 
189 aa  80.1  0.00000000000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_2530  cold-shock DNA-binding domain protein  32.69 
 
 
219 aa  80.1  0.00000000000004  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_2791  cold-shock DNA-binding domain-containing protein  32.48 
 
 
220 aa  79.7  0.00000000000006  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.190915  normal  0.419031 
 
 
-
 
NC_009664  Krad_3637  putative cold-shock DNA-binding domain protein  59.09 
 
 
67 aa  79.3  0.00000000000007  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_3880  cold-shock DNA-binding domain protein  60.61 
 
 
67 aa  79.3  0.00000000000007  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.902071  n/a   
 
 
-
 
NC_007406  Nwi_1609  cold-shock protein, DNA-binding  33.76 
 
 
217 aa  79.3  0.00000000000007  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0789892  normal  0.308571 
 
 
-
 
NC_007778  RPB_2938  cold-shock DNA-binding domain-containing protein  32.69 
 
 
221 aa  79.3  0.00000000000007  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.645608  normal  0.339139 
 
 
-
 
NC_010505  Mrad2831_0144  cold-shock DNA-binding domain-containing protein  30.32 
 
 
259 aa  79.3  0.00000000000007  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.569824  normal  0.04146 
 
 
-
 
NC_010725  Mpop_3196  cold-shock DNA-binding domain protein  30.41 
 
 
181 aa  79.3  0.00000000000008  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3232  cold-shock DNA-binding domain protein  31.58 
 
 
181 aa  79  0.00000000000009  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.336817 
 
 
-
 
NC_002976  SERP0972  CSD family cold shock protein  63.08 
 
 
77 aa  78.6  0.0000000000001  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6800  cold-shock DNA-binding domain protein  57.58 
 
 
67 aa  79  0.0000000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_3007  cold-shock protein DNA-binding  30.98 
 
 
202 aa  79  0.0000000000001  Methylobacterium extorquens PA1  Bacteria  normal  0.0372335  normal 
 
 
-
 
NC_010505  Mrad2831_2736  cold-shock DNA-binding domain-containing protein  32.91 
 
 
201 aa  78.6  0.0000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.634457 
 
 
-
 
NC_008347  Mmar10_1498  cold-shock DNA-binding protein family protein  32.72 
 
 
174 aa  78.6  0.0000000000001  Maricaulis maris MCS10  Bacteria  normal  0.919918  normal  0.868857 
 
 
-
 
NC_009667  Oant_1923  cold-shock DNA-binding domain-containing protein  32.08 
 
 
193 aa  78.6  0.0000000000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.384724  n/a   
 
 
-
 
NC_010581  Bind_1528  cold-shock DNA-binding domain-containing protein  32.75 
 
 
224 aa  79  0.0000000000001  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.689513  normal  0.786377 
 
 
-
 
NC_009485  BBta_4038  cold-shock DNA-binding protein family protein  32.68 
 
 
217 aa  78.2  0.0000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0877657 
 
 
-
 
NC_011666  Msil_0551  cold-shock DNA-binding domain protein  31.49 
 
 
189 aa  77.8  0.0000000000002  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007964  Nham_2142  cold-shock DNA-binding domain-containing protein  31.85 
 
 
217 aa  77.4  0.0000000000003  Nitrobacter hamburgensis X14  Bacteria  normal  0.584578  n/a   
 
 
-
 
NC_013172  Bfae_10670  cold-shock DNA-binding protein family  57.58 
 
 
67 aa  77  0.0000000000004  Brachybacterium faecium DSM 4810  Bacteria  hitchhiker  0.00582905  n/a   
 
 
-
 
NC_013159  Svir_37160  cold-shock DNA-binding protein family  62.12 
 
 
67 aa  77  0.0000000000004  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.0943216 
 
 
-
 
NC_008146  Mmcs_4798  cold-shock DNA-binding protein family protein  58.21 
 
 
67 aa  77  0.0000000000004  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_5184  cold-shock DNA-binding protein family protein  58.21 
 
 
67 aa  77  0.0000000000004  Mycobacterium sp. JLS  Bacteria  normal  hitchhiker  0.00427326 
 
 
-
 
NC_009338  Mflv_1392  cold-shock DNA-binding domain-containing protein  59.09 
 
 
67 aa  77  0.0000000000004  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.124556  normal  0.329269 
 
 
-
 
NC_008705  Mkms_4884  cold-shock DNA-binding protein family protein  58.21 
 
 
67 aa  77  0.0000000000004  Mycobacterium sp. KMS  Bacteria  normal  0.71911  normal  0.101787 
 
 
-
 
NC_008726  Mvan_5398  cold-shock DNA-binding domain-containing protein  59.09 
 
 
67 aa  76.6  0.0000000000004  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.262283  normal  0.0908383 
 
 
-
 
NC_013441  Gbro_0573  Cold-shock protein DNA-binding protein  60.61 
 
 
67 aa  76.6  0.0000000000005  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_3156  cold-shock DNA-binding domain protein  30.69 
 
 
268 aa  76.6  0.0000000000006  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_0892  cold-shock DNA-binding domain protein  59.09 
 
 
68 aa  76.3  0.0000000000006  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013093  Amir_1042  cold-shock DNA-binding domain protein  59.38 
 
 
68 aa  75.9  0.0000000000007  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_1228  cold-shock family protein  32.08 
 
 
193 aa  76.3  0.0000000000007  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0143  putative cold-shock DNA-binding domain protein  59.09 
 
 
67 aa  75.9  0.0000000000008  Streptosporangium roseum DSM 43021  Bacteria  normal  0.113975  normal 
 
 
-
 
NC_009511  Swit_2901  cold-shock DNA-binding protein family protein  36.94 
 
 
288 aa  75.9  0.0000000000008  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.654674 
 
 
-
 
NC_007777  Francci3_4469  cold-shock DNA-binding protein family protein  56.06 
 
 
67 aa  75.9  0.0000000000009  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_13677  cold shock protein A cspA  57.58 
 
 
67 aa  75.9  0.0000000000009  Mycobacterium tuberculosis F11  Bacteria  normal  0.0108357  normal  0.108106 
 
 
-
 
NC_011662  Tmz1t_1374  cold-shock DNA-binding domain protein  51.56 
 
 
67 aa  75.1  0.000000000001  Thauera sp. MZ1T  Bacteria  normal  0.287556  n/a   
 
 
-
 
NC_007964  Nham_0367  cold-shock DNA-binding domain-containing protein  55.38 
 
 
73 aa  75.5  0.000000000001  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_5230  cold-shock DNA-binding domain-containing protein  57.58 
 
 
67 aa  74.7  0.000000000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.244858  normal 
 
 
-
 
NC_007777  Francci3_0260  cold-shock DNA-binding protein family protein  55.88 
 
 
67 aa  75.1  0.000000000002  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_2846  cold-shock DNA-binding domain-containing protein  53.85 
 
 
73 aa  74.3  0.000000000002  Nitrobacter hamburgensis X14  Bacteria  normal  0.495681  n/a   
 
 
-
 
NC_008541  Arth_0777  cold-shock DNA-binding protein family protein  56.72 
 
 
67 aa  74.7  0.000000000002  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_6575  cold-shock DNA-binding domain-containing protein  55.88 
 
 
67 aa  75.1  0.000000000002  Frankia sp. EAN1pec  Bacteria  normal  0.513102  normal 
 
 
-
 
NC_008686  Pden_0859  cold-shock DNA-binding domain-containing protein  31.96 
 
 
197 aa  73.9  0.000000000003  Paracoccus denitrificans PD1222  Bacteria  normal  0.384047  normal 
 
 
-
 
NC_004310  BR1266  cold-shock family protein  31.45 
 
 
193 aa  73.6  0.000000000004  Brucella suis 1330  Bacteria  normal  0.397552  n/a   
 
 
-
 
NC_009380  Strop_0268  cold-shock DNA-binding domain-containing protein  55.88 
 
 
67 aa  73.6  0.000000000005  Salinispora tropica CNB-440  Bacteria  normal  hitchhiker  0.00110044 
 
 
-
 
NC_009953  Sare_0310  cold-shock DNA-binding domain-containing protein  55.88 
 
 
67 aa  73.6  0.000000000005  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.000124748 
 
 
-
 
NC_008254  Meso_1733  cold-shock DNA-binding protein family protein  33.14 
 
 
197 aa  73.2  0.000000000005  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0273  cold-shock DNA-binding domain protein  54.55 
 
 
67 aa  73.2  0.000000000006  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_3200  cold-shock DNA-binding domain protein  28.64 
 
 
279 aa  73.2  0.000000000006  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.693924  normal  0.993369 
 
 
-
 
NC_007760  Adeh_0252  cold-shock DNA-binding protein family protein  54.55 
 
 
67 aa  73.2  0.000000000006  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.994476  n/a   
 
 
-
 
NC_011145  AnaeK_0262  cold-shock DNA-binding domain protein  54.55 
 
 
67 aa  73.2  0.000000000006  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_2034  cold-shock DNA-binding domain-containing protein  52.31 
 
 
67 aa  72.8  0.000000000007  Nitrobacter hamburgensis X14  Bacteria  normal  0.465881  n/a   
 
 
-
 
NC_011901  Tgr7_0172  cold-shock DNA-binding domain protein  52.38 
 
 
67 aa  72.8  0.000000000008  Thioalkalivibrio sp. HL-EbGR7  Bacteria  hitchhiker  0.0000163048  n/a   
 
 
-
 
NC_008726  Mvan_1040  cold-shock DNA-binding domain-containing protein  58.46 
 
 
67 aa  72.4  0.000000000008  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.366618  normal 
 
 
-
 
NC_009077  Mjls_2334  cold-shock DNA-binding protein family protein  56.92 
 
 
67 aa  72.4  0.000000000009  Mycobacterium sp. JLS  Bacteria  normal  0.213577  normal  0.0207687 
 
 
-
 
NC_009380  Strop_1775  cold-shock protein, DNA-binding  54.55 
 
 
67 aa  72.4  0.000000000009  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_3828  cold-shock DNA-binding protein family protein  53.03 
 
 
86 aa  72.4  0.000000000009  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_2295  cold-shock DNA-binding protein family protein  56.92 
 
 
67 aa  72.4  0.000000000009  Mycobacterium sp. MCS  Bacteria  normal  0.904352  n/a   
 
 
-
 
NC_009953  Sare_1762  cold-shock DNA-binding domain-containing protein  54.55 
 
 
67 aa  72.4  0.000000000009  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00760021 
 
 
-
 
NC_008705  Mkms_2342  cold-shock DNA-binding protein family protein  56.92 
 
 
67 aa  72.4  0.000000000009  Mycobacterium sp. KMS  Bacteria  normal  normal  0.432439 
 
 
-
 
NC_010506  Swoo_2095  cold-shock DNA-binding domain-containing protein  52.31 
 
 
68 aa  72  0.00000000001  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00070927  normal  0.594986 
 
 
-
 
NC_010172  Mext_2974  cold-shock protein DNA-binding  28.36 
 
 
281 aa  72.4  0.00000000001  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.372989 
 
 
-
 
NC_013131  Caci_8123  cold-shock DNA-binding domain protein  55.88 
 
 
67 aa  71.6  0.00000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_1788  putative cold shock protein  32.08 
 
 
173 aa  72  0.00000000001  Dinoroseobacter shibae DFL 12  Bacteria  hitchhiker  0.000033725  normal 
 
 
-
 
NC_013595  Sros_8911  putative cold-shock DNA-binding domain protein  54.55 
 
 
66 aa  72  0.00000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_2880  cold-shock DNA-binding domain protein  58.21 
 
 
68 aa  72  0.00000000001  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000807571  n/a   
 
 
-
 
NC_013510  Tcur_0803  cold-shock DNA-binding domain protein  55.22 
 
 
66 aa  72  0.00000000001  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_0036  cold-shock DNA-binding domain-containing protein  55.38 
 
 
66 aa  71.2  0.00000000002  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_2053  cold-shock DNA-binding domain protein  54.84 
 
 
67 aa  71.2  0.00000000002  Nakamurella multipartita DSM 44233  Bacteria  normal  0.203977  normal  0.0111256 
 
 
-
 
NC_007947  Mfla_2140  cold-shock DNA-binding protein family protein  50 
 
 
67 aa  71.2  0.00000000002  Methylobacillus flagellatus KT  Bacteria  decreased coverage  0.000000000648799  normal 
 
 
-
 
NC_009664  Krad_0218  putative cold-shock DNA-binding domain protein  56.06 
 
 
67 aa  71.6  0.00000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.230692  hitchhiker  0.00399283 
 
 
-
 
NC_009253  Dred_3245  cold-shock DNA-binding domain-containing protein  58.73 
 
 
65 aa  71.6  0.00000000002  Desulfotomaculum reducens MI-1  Bacteria  normal  0.370321  n/a   
 
 
-
 
NC_008783  BARBAKC583_0834  cold-shock DNA-binding family protein  30.32 
 
 
179 aa  70.9  0.00000000002  Bartonella bacilliformis KC583  Bacteria  normal  0.253832  n/a   
 
 
-
 
NC_010718  Nther_0320  cold-shock DNA-binding protein family  53.85 
 
 
68 aa  71.2  0.00000000002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.673011 
 
 
-
 
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