Gene Nham_2142 details

Gene Information

• Locus tag: Nham_2142
• ID: 4030210
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrobacter hamburgensis X14
• Kingdom: Bacteria
• Replicon accession: NC_007964
• Strand: -
• Start bp: 2383624
• End bp: 2384277
• Gene Length: 654 bp
• Protein Length: 217 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 637970600
• Product: cold-shock DNA-binding domain-containing protein
• Protein accession: YP_577398
• Protein GI: 92117669
• COG category: [K] Transcription
• COG ID: [COG1278] Cold shock proteins

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 0.584578
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGGGCAG ACGGTTTTGA ATCCAGGAAG TTTGGAGGTC CGGCGGTGAG CGATCACCTT 
GGGTCGAAGG ACTTTTCTGG AACGGCGGAT CGGGAGTCGG GGGTTGGTCC GTTTACGGGG 
GTTGGAGAAT CCCCCGCGAA CATTGTCGAG ATCAGCGGCG TCATCAAATG GTTCGACGCT 
TCAAAGGGCT ACGGTTTCAT CATCCCCGAT AACGGCTGGT CGGATGTGCT GCTGCATGTC 
ACCGTGCTTC GTCGCGACGG CTATCAGACG GTTTACGAGG GAGCCCGTCT GATCTGCGAA 
TGCGTGCAGC GAGCGAAGGG CTATCAGGTG TTCCGGATCA CCTCCATGGA CGAGTCCACC 
GCAATTCACC CGGCGCAGAT GCTGCCGCCA CGGACCCATG TCAGTGTAAC GCCGACCAGC 
GGCCTGGAGC GGGCGCAGGT GAAATGGTTC AACCGGTTGC GCGGTTTTGG TTTCTTGACG 
TGCGGCGAGG GGACACCGGA TATTTTCGTC CACATGGAAA CGCTACGGCG CTTCGGCATG 
ACGGAGCTTC GACCGGGACA GTTCGTGCTG GTCCGGTTCG GGCCGGGCTC CAAGGGCATG 
ATGGCGGCGG AAATTCAGCC GGAAACCGGC GCCCCGGGCC TGTCCTCTCA CTGA 

 

Protein sequence

MGADGFESRK FGGPAVSDHL GSKDFSGTAD RESGVGPFTG VGESPANIVE ISGVIKWFDA 
SKGYGFIIPD NGWSDVLLHV TVLRRDGYQT VYEGARLICE CVQRAKGYQV FRITSMDEST 
AIHPAQMLPP RTHVSVTPTS GLERAQVKWF NRLRGFGFLT CGEGTPDIFV HMETLRRFGM 
TELRPGQFVL VRFGPGSKGM MAAEIQPETG APGLSSH