Gene Rpal_3878 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_3878 
Symbol 
ID6411558 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp4165111 
End bp4165320 
Gene Length210 bp 
Protein Length69 aa 
Translation table11 
GC content60% 
IMG OID642713760 
Productcold-shock DNA-binding domain protein 
Protein accessionYP_001992851 
Protein GI192292246 
COG category[K] Transcription 
COG ID[COG1278] Cold shock proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGACAG GAACCGTGAA GTGGTTCAAC GGCCAAAAGG GTTTTGGCTT CATCGCACCG 
AGCGACGGCG GCAACGACGT GTTTGTGCAC ATCAGCGCGG TTGAACGCGC CGGCCTGACC
GGCCTCGCCG AAGGCCAAAA GGTCTCGTTC GAGGTCAAGA CCGACAAGAT GCGCGGCAAG
AGCAGCGCCG AAAATCTCGC GCTGGCTTGA
 
Protein sequence
MTTGTVKWFN GQKGFGFIAP SDGGNDVFVH ISAVERAGLT GLAEGQKVSF EVKTDKMRGK 
SSAENLALA