25 homologs were found in PanDaTox collection
for query gene Strop_3774 on replicon NC_009380
Organism: Salinispora tropica CNB-440



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009380  Strop_3774  helix-turn-helix domain-containing protein  100 
 
 		 88 aa  168  2e-41  Salinispora tropica CNB-440  Bacteria  normal  1  normal  0.863863 
 
 
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NC_009953  Sare_4156  XRE family transcriptional regulator  89.77 
 
 		 88 aa  152  2e-36  Salinispora arenicola CNS-205  Bacteria  normal  0.384978  decreased coverage  0.00010611 
 
 
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NC_013595  Sros_4952  putative transcriptional regulator, XRE family  64.2 
 
 		 89 aa  101  3e-21  Streptosporangium roseum DSM 43021  Bacteria  normal  0.368473  normal  0.877055 
 
 
-
 
NC_014158  Tpau_2928  transcriptional regulator, XRE family  68.35 
 
 		 88 aa  97.1  8e-20  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.407893  n/a   
 
 
-
 
NC_008705  Mkms_3124  helix-turn-helix domain-containing protein  68.35 
 
 		 97 aa  97.1  8e-20  Mycobacterium sp. KMS  Bacteria  normal  1  normal  0.292105 
 
 
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NC_009077  Mjls_3081  helix-turn-helix domain-containing protein  68.35 
 
 		 97 aa  97.1  8e-20  Mycobacterium sp. JLS  Bacteria  normal  1  normal  0.180494 
 
 
-
 
NC_008726  Mvan_0390  helix-turn-helix domain-containing protein  58.14 
 
 		 88 aa  94  6e-19  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  1  normal  0.948584 
 
 
-
 
NC_009338  Mflv_0783  helix-turn-helix domain-containing protein  62.82 
 
 		 88 aa  93.6  8e-19  Mycobacterium gilvum PYR-GCK  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013441  Gbro_2966  helix-turn-helix domain protein  65.62 
 
 		 86 aa  82.4  0.000000000000002  Gordonia bronchialis DSM 43247  Bacteria  normal  1  n/a   
 
 
-
 
NC_013093  Amir_3439  transcriptional regulator, XRE family  55.56 
 
 		 86 aa  81.3  0.000000000000005  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.0000131898  n/a   
 
 
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NC_013521  Sked_36440  Helix-turn-helix protein  55.41 
 
 		 92 aa  77.8  0.00000000000005  Sanguibacter keddieii DSM 10542  Bacteria  normal  1  normal  0.809869 
 
 
-
 
NC_007777  Francci3_2292  XRE family transcriptional regulator  60.56 
 
 		 92 aa  77.4  0.00000000000005  Frankia sp. CcI3  Bacteria  hitchhiker  0.00214116  hitchhiker  0.0019025 
 
 
-
 
NC_014210  Ndas_3220  helix-turn-helix domain protein  56.76 
 
 		 95 aa  76.6  0.0000000000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009921  Franean1_1431  XRE family transcriptional regulator  52.7 
 
 		 100 aa  75.5  0.0000000000002  Frankia sp. EAN1pec  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013235  Namu_0990  transcriptional regulator, XRE family  54.05 
 
 		 91 aa  75.9  0.0000000000002  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011886  Achl_2801  helix-turn-helix domain protein  58.21 
 
 		 99 aa  75.1  0.0000000000003  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.0262398 
 
 
-
 
NC_013595  Sros_4445  putative transcriptional regulator, XRE family  55.41 
 
 		 84 aa  73.2  0.000000000001  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000092708  hitchhiker  0.000866745 
 
 
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NC_009664  Krad_1792  transcriptional regulator, XRE family  51.35 
 
 		 100 aa  71.6  0.000000000004  Kineococcus radiotolerans SRS30216  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008541  Arth_0869  XRE family transcriptional regulator  53.73 
 
 		 97 aa  69.7  0.00000000001  Arthrobacter sp. FB24  Bacteria  normal  1  n/a   
 
 
-
 
NC_013947  Snas_1534  transcriptional regulator, XRE family  52.44 
 
 		 85 aa  63.5  0.000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.146852  normal  1 
 
 
-
 
NC_013510  Tcur_4375  helix-turn-helix domain protein  58.67 
 
 		 92 aa  57.4  0.00000007  Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
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NC_008148  Rxyl_1009  XRE family transcriptional regulator  44.07 
 
 		 170 aa  43.1  0.001  Rubrobacter xylanophilus DSM 9941  Bacteria  hitchhiker  0.000623644  n/a   
 
 
-
 
NC_010505  Mrad2831_4811  XRE family transcriptional regulator  39.06 
 
 		 201 aa  42  0.003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  hitchhiker  0.00213383 
 
 
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NC_013739  Cwoe_0107  transcriptional regulator, XRE family  36.49 
 
 		 93 aa  40  0.01  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  0.396345 
 
 
-
 
NC_013739  Cwoe_3195  transcriptional regulator, XRE family  38.96 
 
 		 80 aa  40  0.01  Conexibacter woesei DSM 14684  Bacteria  normal  0.0958967  normal  1 
 
 
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