22 homologs were found in PanDaTox collection
for query gene Amir_3439 on replicon NC_013093
Organism: Actinosynnema mirum DSM 43827



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013093  Amir_3439  transcriptional regulator, XRE family  100 
 
 		 86 aa  169  9e-42  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.0000131898  n/a   
 
 
-
 
NC_007777  Francci3_2292  XRE family transcriptional regulator  75 
 
 		 92 aa  107  7.000000000000001e-23  Frankia sp. CcI3  Bacteria  hitchhiker  0.00214116  hitchhiker  0.0019025 
 
 
-
 
NC_013595  Sros_4445  putative transcriptional regulator, XRE family  68.92 
 
 		 84 aa  105  3e-22  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000092708  hitchhiker  0.000866745 
 
 
-
 
NC_014210  Ndas_3220  helix-turn-helix domain protein  67.11 
 
 		 95 aa  97.8  4e-20  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013521  Sked_36440  Helix-turn-helix protein  64 
 
 		 92 aa  94.4  5e-19  Sanguibacter keddieii DSM 10542  Bacteria  normal  1  normal  0.809869 
 
 
-
 
NC_013947  Snas_1534  transcriptional regulator, XRE family  72.37 
 
 		 85 aa  93.2  1e-18  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.146852  normal  1 
 
 
-
 
NC_009664  Krad_1792  transcriptional regulator, XRE family  59.49 
 
 		 100 aa  92  2e-18  Kineococcus radiotolerans SRS30216  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009921  Franean1_1431  XRE family transcriptional regulator  58.23 
 
 		 100 aa  90.9  6e-18  Frankia sp. EAN1pec  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011886  Achl_2801  helix-turn-helix domain protein  56.96 
 
 		 99 aa  88.2  3e-17  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.0262398 
 
 
-
 
NC_013235  Namu_0990  transcriptional regulator, XRE family  57.83 
 
 		 91 aa  88.2  4e-17  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008541  Arth_0869  XRE family transcriptional regulator  60.56 
 
 		 97 aa  84.7  4e-16  Arthrobacter sp. FB24  Bacteria  normal  1  n/a   
 
 
-
 
NC_008726  Mvan_0390  helix-turn-helix domain-containing protein  59.46 
 
 		 88 aa  82.8  0.000000000000001  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  1  normal  0.948584 
 
 
-
 
NC_009380  Strop_3774  helix-turn-helix domain-containing protein  55.56 
 
 		 88 aa  81.3  0.000000000000005  Salinispora tropica CNB-440  Bacteria  normal  1  normal  0.863863 
 
 
-
 
NC_009077  Mjls_3081  helix-turn-helix domain-containing protein  56.58 
 
 		 97 aa  79.3  0.00000000000002  Mycobacterium sp. JLS  Bacteria  normal  1  normal  0.180494 
 
 
-
 
NC_008705  Mkms_3124  helix-turn-helix domain-containing protein  56.58 
 
 		 97 aa  79.3  0.00000000000002  Mycobacterium sp. KMS  Bacteria  normal  1  normal  0.292105 
 
 
-
 
NC_013595  Sros_4952  putative transcriptional regulator, XRE family  52.7 
 
 		 89 aa  77.4  0.00000000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  0.368473  normal  0.877055 
 
 
-
 
NC_009338  Mflv_0783  helix-turn-helix domain-containing protein  56.16 
 
 		 88 aa  77.4  0.00000000000006  Mycobacterium gilvum PYR-GCK  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009953  Sare_4156  XRE family transcriptional regulator  51.25 
 
 		 88 aa  76.6  0.0000000000001  Salinispora arenicola CNS-205  Bacteria  normal  0.384978  decreased coverage  0.00010611 
 
 
-
 
NC_014158  Tpau_2928  transcriptional regulator, XRE family  59.46 
 
 		 88 aa  76.3  0.0000000000001  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.407893  n/a   
 
 
-
 
NC_013510  Tcur_4375  helix-turn-helix domain protein  58.54 
 
 		 92 aa  74.7  0.0000000000004  Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
-
 
NC_013441  Gbro_2966  helix-turn-helix domain protein  60.94 
 
 		 86 aa  73.9  0.0000000000007  Gordonia bronchialis DSM 43247  Bacteria  normal  1  n/a   
 
 
-
 
NC_008609  Ppro_0264  XRE family transcriptional regulator  42.86 
 
 		 112 aa  40  0.01  Pelobacter propionicus DSM 2379  Bacteria  normal  1  n/a   
 
 
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