30 homologs were found in PanDaTox collection
for query gene Rru_A2442 on replicon NC_007643
Organism: Rhodospirillum rubrum ATCC 11170



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007643  Rru_A2442  XRE family transcriptional regulator  100 
 
 
86 aa  170  6.999999999999999e-42  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_0155  XRE family transcriptional regulator  47.5 
 
 
83 aa  78.6  0.00000000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.540606  hitchhiker  0.00139635 
 
 
-
 
NC_009483  Gura_1476  XRE family transcriptional regulator  45.45 
 
 
91 aa  75.5  0.0000000000002  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2898  transcriptional regulator, XRE family  40.26 
 
 
83 aa  72.4  0.000000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2300  XRE family transcriptional regulator  49.4 
 
 
83 aa  59.7  0.00000001  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.4676  normal  0.0781395 
 
 
-
 
NC_011312  VSAL_I1801  DNA-binding transcriptional regulator HipB  34.18 
 
 
83 aa  54.3  0.0000005  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_2034  XRE family transcriptional regulator  39.19 
 
 
83 aa  53.9  0.0000007  Enterobacter sp. 638  Bacteria  normal  normal  0.194194 
 
 
-
 
NC_009832  Spro_0567  XRE family transcriptional regulator  41.27 
 
 
82 aa  52  0.000003  Serratia proteamaculans 568  Bacteria  normal  0.102591  normal 
 
 
-
 
NC_012912  Dd1591_4245  helix-turn-helix domain protein  38.36 
 
 
84 aa  50.4  0.000008  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_3847  helix-turn-helix domain-containing protein  32.91 
 
 
93 aa  50.1  0.00001  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0496  XRE family transcriptional regulator  35.71 
 
 
103 aa  48.5  0.00003  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_003247  putative transcription regulator protein  36.11 
 
 
88 aa  47  0.00008  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_5258  XRE family transcriptional regulator  31.4 
 
 
83 aa  46.2  0.0001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.787301 
 
 
-
 
NC_009052  Sbal_0367  XRE family transcriptional regulator  34.21 
 
 
93 aa  45.4  0.0002  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_4613  helix-turn-helix domain protein  29.87 
 
 
89 aa  45.1  0.0003  Pectobacterium wasabiae WPP163  Bacteria  normal  0.590277  n/a   
 
 
-
 
NC_009665  Shew185_0365  helix-turn-helix domain-containing protein  34.21 
 
 
93 aa  45.1  0.0003  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_0306  transciptional regulator  34.21 
 
 
93 aa  45.1  0.0003  Shewanella denitrificans OS217  Bacteria  normal  0.93162  n/a   
 
 
-
 
NC_009997  Sbal195_0378  helix-turn-helix domain-containing protein  34.21 
 
 
93 aa  45.1  0.0003  Shewanella baltica OS195  Bacteria  normal  normal  0.244718 
 
 
-
 
NC_008825  Mpe_A2711  hypothetical protein  37.14 
 
 
94 aa  44.3  0.0006  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.75348 
 
 
-
 
NC_010483  TRQ2_1496  XRE family transcriptional regulator  41.51 
 
 
110 aa  43.1  0.001  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_4032  helix-turn-helix domain protein  37.5 
 
 
83 aa  42.4  0.002  Dickeya dadantii Ech703  Bacteria  normal  0.964235  n/a   
 
 
-
 
NC_009486  Tpet_1451  helix-turn-helix domain-containing protein  41.51 
 
 
127 aa  42.7  0.002  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_4570  XRE family transcriptional regulator  36.51 
 
 
99 aa  42  0.003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.27714 
 
 
-
 
NC_006368  lpp0065  hypothetical protein  25.97 
 
 
79 aa  41.2  0.005  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_012560  Avin_20520  DNA binding protein, XRE family  31.08 
 
 
76 aa  41.2  0.005  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0058  transcriptional regulator, XRE family  39.62 
 
 
112 aa  41.2  0.005  Clostridium cellulolyticum H10  Bacteria  normal  0.0711688  n/a   
 
 
-
 
NC_010338  Caul_2246  XRE family transcriptional regulator  32.26 
 
 
117 aa  41.2  0.005  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_3620  transcriptional regulator, XRE family  41.1 
 
 
99 aa  40.4  0.007  Thermomonospora curvata DSM 43183  Bacteria  normal  0.494695  n/a   
 
 
-
 
NC_009656  PSPA7_3725  DNA-binding protein  30.43 
 
 
258 aa  40.4  0.008  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RSp1252  putative transcription regulator protein  32.84 
 
 
88 aa  40.4  0.009  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
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