More than 300 homologs were found in PanDaTox collection
for query gene RPC_0856 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007925  RPC_0856  binding-protein-dependent transport systems inner membrane component  100 
 
 
291 aa  573  1.0000000000000001e-162  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.678163  normal 
 
 
-
 
NC_007952  Bxe_B2358  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  27.97 
 
 
269 aa  115  1.0000000000000001e-24  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.540869 
 
 
-
 
NC_013441  Gbro_3478  binding-protein-dependent transport systems inner membrane component  27.2 
 
 
291 aa  96.7  4e-19  Gordonia bronchialis DSM 43247  Bacteria  normal  0.466071  n/a   
 
 
-
 
NC_013512  Sdel_1557  binding-protein-dependent transport systems inner membrane component  29.38 
 
 
260 aa  96.7  4e-19  Sulfurospirillum deleyianum DSM 6946  Bacteria  unclonable  0.0000000228451  n/a   
 
 
-
 
NC_010510  Mrad2831_5824  binding-protein-dependent transport systems inner membrane component  29.77 
 
 
271 aa  94  3e-18  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.371064  hitchhiker  0.00175636 
 
 
-
 
NC_011662  Tmz1t_2851  binding-protein-dependent transport systems inner membrane component  29.7 
 
 
285 aa  92.4  7e-18  Thauera sp. MZ1T  Bacteria  normal  0.328809  n/a   
 
 
-
 
NC_009656  PSPA7_1679  ABC transporter permease  28.51 
 
 
274 aa  91.7  1e-17  Pseudomonas aeruginosa PA7  Bacteria  normal  0.451747  n/a   
 
 
-
 
NC_009050  Rsph17029_3612  binding-protein-dependent transport systems inner membrane component  32.42 
 
 
276 aa  92  1e-17  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_3901  binding-protein-dependent transport systems inner membrane component  29.24 
 
 
255 aa  91.3  2e-17  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0566341  n/a   
 
 
-
 
NC_008463  PA14_19510  ABC transporter permease  28.51 
 
 
274 aa  90.9  2e-17  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4844  binding-protein-dependent transport systems inner membrane component  29.65 
 
 
288 aa  90.9  3e-17  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_007575  Suden_1347  binding-protein dependent transport system inner membrane protein  29.25 
 
 
260 aa  89.4  6e-17  Sulfurimonas denitrificans DSM 1251  Bacteria  hitchhiker  0.000000648082  n/a   
 
 
-
 
NC_008786  Veis_1108  binding-protein-dependent transport systems inner membrane component  28.46 
 
 
255 aa  89.4  6e-17  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.135552 
 
 
-
 
NC_002947  PP_0239  binding-protein-dependent transport systems inner membrane component  26.69 
 
 
265 aa  88.6  1e-16  Pseudomonas putida KT2440  Bacteria  normal  hitchhiker  0.00756787 
 
 
-
 
NC_011981  Avi_7197  ABC transporter membrane spanning protein (aliphatic sulphonate)  27.68 
 
 
272 aa  88.6  1e-16  Agrobacterium vitis S4  Bacteria  normal  0.0116141  n/a   
 
 
-
 
NC_010322  PputGB1_0263  binding-protein-dependent transport systems inner membrane component  27.19 
 
 
265 aa  87.8  2e-16  Pseudomonas putida GB-1  Bacteria  normal  0.791848  normal 
 
 
-
 
NC_009656  PSPA7_1684  ABC transporter permease  26.58 
 
 
262 aa  87.8  2e-16  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_19570  ABC transporter permease  26.58 
 
 
262 aa  87.8  2e-16  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0254  binding-protein-dependent transport systems inner membrane component  26.69 
 
 
265 aa  88.2  2e-16  Pseudomonas putida F1  Bacteria  normal  0.293544  normal  0.0445843 
 
 
-
 
NC_007005  Psyr_2515  binding-protein dependent transport system inner membrane protein  27.97 
 
 
282 aa  87  3e-16  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.313862  normal 
 
 
-
 
NC_007644  Moth_1982  binding-protein dependent transport system inner membrane protein  30.26 
 
 
266 aa  87  3e-16  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.187248  normal 
 
 
-
 
NC_010501  PputW619_4973  binding-protein-dependent transport systems inner membrane component  26.69 
 
 
265 aa  87  3e-16  Pseudomonas putida W619  Bacteria  normal  0.0722896  normal  0.022026 
 
 
-
 
NC_009253  Dred_0438  binding-protein-dependent transport systems inner membrane component  26.41 
 
 
251 aa  87  3e-16  Desulfotomaculum reducens MI-1  Bacteria  normal  0.865643  n/a   
 
 
-
 
NC_012850  Rleg_2304  binding-protein-dependent transport systems inner membrane component  28.39 
 
 
278 aa  86.7  4e-16  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.37818 
 
 
-
 
NC_013421  Pecwa_0030  binding-protein-dependent transport systems inner membrane component  25 
 
 
264 aa  86.3  5e-16  Pectobacterium wasabiae WPP163  Bacteria  normal  0.050552  n/a   
 
 
-
 
NC_007492  Pfl01_5412  binding-protein dependent transport system inner membrane protein  26.27 
 
 
260 aa  86.3  5e-16  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.210037  hitchhiker  0.00191971 
 
 
-
 
NC_007492  Pfl01_3295  binding-protein dependent transport system inner membrane protein  28.06 
 
 
279 aa  86.3  6e-16  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_0250  binding-protein-dependent transport systems inner membrane component  28.51 
 
 
280 aa  86.3  6e-16  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1807  binding-protein-dependent transport systems inner membrane component  29.39 
 
 
244 aa  85.9  8e-16  Methylobacterium extorquens PA1  Bacteria  normal  0.5785  normal  0.739795 
 
 
-
 
NC_012917  PC1_0024  binding-protein-dependent transport systems inner membrane component  23.81 
 
 
264 aa  85.9  8e-16  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2787  ABC transporter, permease protein  27.38 
 
 
282 aa  85.1  0.000000000000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0328614  n/a   
 
 
-
 
NC_011992  Dtpsy_2682  binding-protein-dependent transport systems inner membrane component  30.41 
 
 
263 aa  85.1  0.000000000000001  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_2143  binding-protein-dependent transport systems inner membrane component  29.39 
 
 
244 aa  85.1  0.000000000000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.611067  normal  0.421557 
 
 
-
 
NC_009708  YpsIP31758_0355  putative ABC aliphatic sulfonates transporter, permease subunit  25.83 
 
 
264 aa  84  0.000000000000002  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_0423  binding-protein-dependent transport systems inner membrane component  25.83 
 
 
264 aa  84  0.000000000000002  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_0827  ABC aliphatic sulfonate transporter, inner membrane subunit  28.64 
 
 
252 aa  84.7  0.000000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.819281  normal 
 
 
-
 
NC_009483  Gura_3884  binding-protein-dependent transport systems inner membrane component  26.72 
 
 
258 aa  84  0.000000000000002  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_1736  binding-protein-dependent transport systems inner membrane component  25.42 
 
 
264 aa  84  0.000000000000003  Serratia proteamaculans 568  Bacteria  normal  0.440066  normal  0.144233 
 
 
-
 
NC_010725  Mpop_1759  binding-protein-dependent transport systems inner membrane component  29.11 
 
 
244 aa  83.2  0.000000000000004  Methylobacterium populi BJ001  Bacteria  normal  normal  0.895228 
 
 
-
 
NC_011729  PCC7424_0058  binding-protein-dependent transport systems inner membrane component  28.51 
 
 
275 aa  83.2  0.000000000000004  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013743  Htur_2803  binding-protein-dependent transport systems inner membrane component  26.07 
 
 
279 aa  83.6  0.000000000000004  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_010085  Nmar_1283  binding-protein-dependent transporter inner membrane protein  25.3 
 
 
252 aa  82.4  0.000000000000008  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal  0.0507526 
 
 
-
 
NC_008686  Pden_2356  binding-protein-dependent transport systems inner membrane component  27.91 
 
 
260 aa  82.4  0.000000000000008  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_4564  taurine transporter subunit  28.89 
 
 
279 aa  82.4  0.000000000000009  Serratia proteamaculans 568  Bacteria  normal  normal  0.746145 
 
 
-
 
NC_010465  YPK_0260  taurine transporter subunit  28.08 
 
 
284 aa  82  0.00000000000001  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0563  binding-protein-dependent transport systems inner membrane component  27.72 
 
 
250 aa  81.6  0.00000000000001  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0273094  n/a   
 
 
-
 
NC_009972  Haur_2787  binding-protein-dependent transport systems inner membrane component  24.63 
 
 
272 aa  82  0.00000000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.334714  n/a   
 
 
-
 
NC_009708  YpsIP31758_3936  taurine transporter subunit  28.08 
 
 
284 aa  82  0.00000000000001  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_1453  alkanesulfonate transporter permease subunit  27.5 
 
 
263 aa  82  0.00000000000001  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_19350  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  25 
 
 
293 aa  82  0.00000000000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.449157  normal  0.837307 
 
 
-
 
NC_013165  Shel_13670  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  24.34 
 
 
249 aa  82  0.00000000000001  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A3693  taurine transporter subunit  28.08 
 
 
284 aa  82  0.00000000000001  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_4471  nitrate ABC transporter, inner membrane subunit  25.66 
 
 
297 aa  81.3  0.00000000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.5689 
 
 
-
 
NC_009511  Swit_2511  binding-protein-dependent transport systems inner membrane component  27.04 
 
 
266 aa  80.9  0.00000000000002  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1763  binding-protein-dependent transport systems inner membrane component  26.82 
 
 
282 aa  80.9  0.00000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_0877  binding-protein-dependent transport systems inner membrane component  24.1 
 
 
260 aa  80.5  0.00000000000003  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00000000112184  n/a   
 
 
-
 
NC_009524  PsycPRwf_1445  binding-protein-dependent transport systems inner membrane component  23.33 
 
 
259 aa  80.5  0.00000000000003  Psychrobacter sp. PRwf-1  Bacteria  normal  normal  0.318112 
 
 
-
 
NC_008688  Pden_5005  binding-protein-dependent transport systems inner membrane component  25.37 
 
 
289 aa  80.5  0.00000000000003  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA0467  taurine ABC transporter, permease protein, putative  23.66 
 
 
272 aa  80.1  0.00000000000004  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A3058  taurine ABC transporter, permease protein  22.63 
 
 
274 aa  80.1  0.00000000000004  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0406  putative taurine ABC transporter, permease protein  23.66 
 
 
272 aa  80.1  0.00000000000004  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0435  binding-protein-dependent transport systems inner membrane component  26.7 
 
 
250 aa  79.7  0.00000000000005  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1380  binding-protein-dependent transporter inner membrane component  24.9 
 
 
277 aa  79.3  0.00000000000006  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.153307 
 
 
-
 
NC_010483  TRQ2_0450  binding-protein-dependent transport systems inner membrane component  26.7 
 
 
222 aa  79.3  0.00000000000006  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_1171  taurine ABC transporter permease  27.31 
 
 
272 aa  79.7  0.00000000000006  Pseudomonas aeruginosa PA7  Bacteria  normal  0.104716  n/a   
 
 
-
 
NC_010622  Bphy_1648  binding-protein-dependent transport systems inner membrane component  27.2 
 
 
283 aa  79.3  0.00000000000008  Burkholderia phymatum STM815  Bacteria  normal  0.189471  normal  0.0804385 
 
 
-
 
NC_010338  Caul_2657  binding-protein-dependent transport systems inner membrane component  27.2 
 
 
269 aa  79  0.00000000000009  Caulobacter sp. K31  Bacteria  normal  normal  0.363458 
 
 
-
 
NC_009439  Pmen_4321  binding-protein-dependent transport systems inner membrane component  27.19 
 
 
264 aa  79  0.00000000000009  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.154719 
 
 
-
 
NC_002967  TDE0211  ABC transporter permease  30.77 
 
 
243 aa  78.2  0.0000000000001  Treponema denticola ATCC 35405  Bacteria  hitchhiker  0.0000181791  n/a   
 
 
-
 
NC_011757  Mchl_1422  binding-protein-dependent transport systems inner membrane component  27.67 
 
 
273 aa  79  0.0000000000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_5315  aliphatic sulfonates ABC transporter, permease protein  26.27 
 
 
265 aa  78.6  0.0000000000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_4875  binding-protein dependent transport system inner membrane protein  26.27 
 
 
265 aa  78.2  0.0000000000001  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746085  normal 
 
 
-
 
NC_010172  Mext_1261  binding-protein-dependent transport systems inner membrane component  27.67 
 
 
273 aa  79  0.0000000000001  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.306936 
 
 
-
 
NC_011662  Tmz1t_1806  binding-protein-dependent transport systems inner membrane component  27.64 
 
 
263 aa  79  0.0000000000001  Thauera sp. MZ1T  Bacteria  normal  0.0565837  n/a   
 
 
-
 
NC_009952  Dshi_0687  two-component system, permease component  26.51 
 
 
258 aa  78.6  0.0000000000001  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.0143417  normal 
 
 
-
 
NC_006274  BCZK2748  sulfonate/taurine ABC transporter permease  24.41 
 
 
274 aa  77.8  0.0000000000002  Bacillus cereus E33L  Bacteria  normal  0.947189  n/a   
 
 
-
 
NC_012912  Dd1591_1439  nitrate ABC transporter, inner membrane subunit  25.62 
 
 
310 aa  77.4  0.0000000000002  Dickeya zeae Ech1591  Bacteria  normal  0.062597  n/a   
 
 
-
 
NC_011004  Rpal_4641  binding-protein-dependent transport systems inner membrane component  25 
 
 
277 aa  77.8  0.0000000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.750363  n/a   
 
 
-
 
NC_009720  Xaut_2503  nitrate ABC transporter, inner membrane subunit  24.16 
 
 
298 aa  78.2  0.0000000000002  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_0483  binding-protein-dependent transport systems inner membrane component  27.68 
 
 
275 aa  77.8  0.0000000000002  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_3138  binding-protein-dependent transport systems inner membrane component  23.91 
 
 
286 aa  77  0.0000000000003  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.453695  n/a   
 
 
-
 
NC_008463  PA14_12960  taurine ABC transporter permease  27.98 
 
 
272 aa  77  0.0000000000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.299757  normal  0.321121 
 
 
-
 
NC_009620  Smed_3934  binding-protein-dependent transport systems inner membrane component  27.15 
 
 
259 aa  77.4  0.0000000000003  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3400  binding-protein-dependent transport systems inner membrane component  29.8 
 
 
275 aa  77.4  0.0000000000003  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_3060  taurine ABC transporter, permease protein  23.94 
 
 
274 aa  76.6  0.0000000000004  Bacillus cereus ATCC 10987  Bacteria  normal  0.0244271  n/a   
 
 
-
 
NC_011884  Cyan7425_4571  nitrate ABC transporter, inner membrane subunit  24.51 
 
 
280 aa  77  0.0000000000004  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_1668  binding-protein-dependent transport systems inner membrane component  27.8 
 
 
288 aa  76.6  0.0000000000004  Nakamurella multipartita DSM 44233  Bacteria  normal  0.173855  normal  0.365472 
 
 
-
 
NC_012856  Rpic12D_0257  nitrate ABC transporter, inner membrane subunit  25.45 
 
 
283 aa  77  0.0000000000004  Ralstonia pickettii 12D  Bacteria  normal  normal  0.738144 
 
 
-
 
NC_009921  Franean1_0722  binding-protein-dependent transport systems inner membrane component  29.33 
 
 
272 aa  77  0.0000000000004  Frankia sp. EAN1pec  Bacteria  normal  0.0102858  normal  0.0961586 
 
 
-
 
NC_010682  Rpic_0236  nitrate ABC transporter, inner membrane subunit  23.83 
 
 
283 aa  76.6  0.0000000000004  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C0928  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  25.53 
 
 
255 aa  76.6  0.0000000000004  Burkholderia xenovorans LB400  Bacteria  normal  0.590061  normal  0.182245 
 
 
-
 
NC_010511  M446_5749  binding-protein-dependent transport systems inner membrane component  26.99 
 
 
244 aa  76.3  0.0000000000005  Methylobacterium sp. 4-46  Bacteria  normal  0.700079  normal  0.0254377 
 
 
-
 
NC_011988  Avi_5896  nitrate ABC transporter permease protein  23.97 
 
 
297 aa  76.6  0.0000000000005  Agrobacterium vitis S4  Bacteria  normal  0.149001  n/a   
 
 
-
 
NC_007947  Mfla_0326  nitrate transport permease  23.74 
 
 
295 aa  76.3  0.0000000000005  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1673  binding-protein-dependent transport systems inner membrane component  26.64 
 
 
263 aa  75.9  0.0000000000007  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_4051  binding-protein-dependent transport systems inner membrane component  29.21 
 
 
273 aa  75.9  0.0000000000008  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.395379 
 
 
-
 
NC_009674  Bcer98_0370  binding-protein-dependent transport systems inner membrane component  22.8 
 
 
256 aa  75.9  0.0000000000008  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_5321  taurine ABC transporter, permease protein  26.53 
 
 
285 aa  75.5  0.0000000000009  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2535  putative taurine ABC transporter, permease protein  24.78 
 
 
282 aa  75.5  0.0000000000009  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.254862  normal 
 
 
-
 
NC_009767  Rcas_2389  binding-protein-dependent transport systems inner membrane component  27.6 
 
 
275 aa  75.1  0.000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
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