More than 300 homologs were found in PanDaTox collection
for query gene Dshi_0687 on replicon NC_009952
Organism: Dinoroseobacter shibae DFL 12



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009952  Dshi_0687  two-component system, permease component  100 
 
 
258 aa  512  1e-144  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.0143417  normal 
 
 
-
 
NC_009620  Smed_3934  binding-protein-dependent transport systems inner membrane component  59.63 
 
 
259 aa  262  4e-69  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_1784  binding-protein-dependent transport systems inner membrane component  55.91 
 
 
253 aa  251  8.000000000000001e-66  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.381458 
 
 
-
 
NC_008686  Pden_2356  binding-protein-dependent transport systems inner membrane component  53.75 
 
 
260 aa  239  4e-62  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_2143  binding-protein-dependent transport systems inner membrane component  52.94 
 
 
244 aa  230  1e-59  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.611067  normal  0.421557 
 
 
-
 
NC_010172  Mext_1807  binding-protein-dependent transport systems inner membrane component  52.94 
 
 
244 aa  230  2e-59  Methylobacterium extorquens PA1  Bacteria  normal  0.5785  normal  0.739795 
 
 
-
 
NC_010725  Mpop_1759  binding-protein-dependent transport systems inner membrane component  51.05 
 
 
244 aa  229  2e-59  Methylobacterium populi BJ001  Bacteria  normal  normal  0.895228 
 
 
-
 
NC_010511  M446_5749  binding-protein-dependent transport systems inner membrane component  53.18 
 
 
244 aa  224  1e-57  Methylobacterium sp. 4-46  Bacteria  normal  0.700079  normal  0.0254377 
 
 
-
 
NC_011662  Tmz1t_2851  binding-protein-dependent transport systems inner membrane component  47.98 
 
 
285 aa  215  4e-55  Thauera sp. MZ1T  Bacteria  normal  0.328809  n/a   
 
 
-
 
NC_011894  Mnod_5974  binding-protein-dependent transport systems inner membrane component  51.82 
 
 
244 aa  212  4.9999999999999996e-54  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0830301  n/a   
 
 
-
 
NC_009485  BBta_5956  ABC transporter permease  52.84 
 
 
245 aa  211  1e-53  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.560438  normal  0.224693 
 
 
-
 
NC_010505  Mrad2831_2776  binding-protein-dependent transport systems inner membrane component  49.17 
 
 
245 aa  209  4e-53  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0898999 
 
 
-
 
NC_003910  CPS_1929  putative sulfonate ABC transporter, permease protein  40.68 
 
 
255 aa  187  2e-46  Colwellia psychrerythraea 34H  Bacteria  normal  0.0770518  n/a   
 
 
-
 
NC_008228  Patl_1865  binding-protein-dependent transport systems inner membrane component  42.61 
 
 
256 aa  186  3e-46  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C0928  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  30.17 
 
 
255 aa  123  3e-27  Burkholderia xenovorans LB400  Bacteria  normal  0.590061  normal  0.182245 
 
 
-
 
NC_007644  Moth_1982  binding-protein dependent transport system inner membrane protein  29.36 
 
 
266 aa  116  3e-25  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.187248  normal 
 
 
-
 
NC_011992  Dtpsy_2682  binding-protein-dependent transport systems inner membrane component  30.71 
 
 
263 aa  111  1.0000000000000001e-23  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B2358  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  26.61 
 
 
269 aa  109  4.0000000000000004e-23  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.540869 
 
 
-
 
NC_009428  Rsph17025_0778  binding-protein-dependent transport systems inner membrane component  32.85 
 
 
270 aa  108  6e-23  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0114  binding-protein-dependent transport systems inner membrane component  33.16 
 
 
286 aa  106  3e-22  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.703431 
 
 
-
 
NC_011004  Rpal_2894  binding-protein-dependent transport systems inner membrane component  31.58 
 
 
280 aa  106  4e-22  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.42556  n/a   
 
 
-
 
NC_005945  BAS2712  sulfonate ABC transporter permease  29.57 
 
 
282 aa  105  9e-22  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_2920  sulfonate ABC transporter permease protein  29.57 
 
 
282 aa  105  9e-22  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_1684  ABC transporter permease  34.76 
 
 
262 aa  104  1e-21  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_2621  binding-protein-dependent transport systems inner membrane component  30.43 
 
 
281 aa  104  2e-21  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00000218671  n/a   
 
 
-
 
NC_008463  PA14_19570  ABC transporter permease  34.76 
 
 
262 aa  103  2e-21  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_1998  binding-protein-dependent transport systems inner membrane component  29.63 
 
 
283 aa  103  3e-21  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.894639  n/a   
 
 
-
 
NC_010172  Mext_0332  binding-protein-dependent transport systems inner membrane component  33.19 
 
 
279 aa  101  1e-20  Methylobacterium extorquens PA1  Bacteria  normal  0.692278  normal 
 
 
-
 
NC_010322  PputGB1_0263  binding-protein-dependent transport systems inner membrane component  34.38 
 
 
265 aa  100  3e-20  Pseudomonas putida GB-1  Bacteria  normal  0.791848  normal 
 
 
-
 
NC_010725  Mpop_0411  binding-protein-dependent transport systems inner membrane component  32.2 
 
 
279 aa  99.8  4e-20  Methylobacterium populi BJ001  Bacteria  normal  0.760866  normal 
 
 
-
 
NC_009972  Haur_2787  binding-protein-dependent transport systems inner membrane component  28.69 
 
 
272 aa  99.8  4e-20  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.334714  n/a   
 
 
-
 
NC_009485  BBta_7646  putative sulfonate ABC transporter, permease protein  27.96 
 
 
282 aa  99.4  6e-20  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0357497  normal  0.620506 
 
 
-
 
NC_012912  Dd1591_1673  binding-protein-dependent transport systems inner membrane component  34.39 
 
 
263 aa  99  7e-20  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_2663  alkanesulfonates transport system permease; sulfonate ABC transporter, permease  29.57 
 
 
282 aa  98.6  8e-20  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_4973  binding-protein-dependent transport systems inner membrane component  33.85 
 
 
265 aa  98.6  8e-20  Pseudomonas putida W619  Bacteria  normal  0.0722896  normal  0.022026 
 
 
-
 
NC_002947  PP_0239  binding-protein-dependent transport systems inner membrane component  33.87 
 
 
265 aa  97.8  1e-19  Pseudomonas putida KT2440  Bacteria  normal  hitchhiker  0.00756787 
 
 
-
 
NC_006274  BCZK2640  alkanesulfonates transport system permease; sulfonate ABC transporter, permease  29.57 
 
 
282 aa  98.2  1e-19  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011981  Avi_7197  ABC transporter membrane spanning protein (aliphatic sulphonate)  29.9 
 
 
272 aa  97.8  1e-19  Agrobacterium vitis S4  Bacteria  normal  0.0116141  n/a   
 
 
-
 
NC_011773  BCAH820_2919  putative sulfonate ABC transporter, permease protein  28.29 
 
 
282 aa  97.8  1e-19  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  2.35916e-18 
 
 
-
 
NC_009512  Pput_0254  binding-protein-dependent transport systems inner membrane component  33.87 
 
 
265 aa  97.8  2e-19  Pseudomonas putida F1  Bacteria  normal  0.293544  normal  0.0445843 
 
 
-
 
NC_010511  M446_5130  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
272 aa  96.7  3e-19  Methylobacterium sp. 4-46  Bacteria  normal  0.612608  normal  0.0470724 
 
 
-
 
NC_007492  Pfl01_5412  binding-protein dependent transport system inner membrane protein  34.69 
 
 
260 aa  96.7  3e-19  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.210037  hitchhiker  0.00191971 
 
 
-
 
NC_012880  Dd703_1642  binding-protein-dependent transport systems inner membrane component  33.16 
 
 
263 aa  96.7  3e-19  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3901  binding-protein-dependent transport systems inner membrane component  31.13 
 
 
255 aa  96.7  3e-19  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0566341  n/a   
 
 
-
 
NC_011830  Dhaf_2658  binding-protein-dependent transport systems inner membrane component  28.57 
 
 
251 aa  95.9  5e-19  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000000111568  n/a   
 
 
-
 
NC_003909  BCE_2959  sulfonate ABC transporter, permease protein, putative  29.63 
 
 
284 aa  95.9  6e-19  Bacillus cereus ATCC 10987  Bacteria  normal  0.132224  n/a   
 
 
-
 
NC_012850  Rleg_3008  binding-protein-dependent transport systems inner membrane component  29.05 
 
 
280 aa  95.9  6e-19  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_1453  alkanesulfonate transporter permease subunit  33.85 
 
 
263 aa  95.5  7e-19  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_010510  Mrad2831_5824  binding-protein-dependent transport systems inner membrane component  28.32 
 
 
271 aa  95.5  8e-19  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.371064  hitchhiker  0.00175636 
 
 
-
 
NC_004578  PSPTO_5321  taurine ABC transporter, permease protein  26.5 
 
 
285 aa  94.7  1e-18  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C0981  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  30.87 
 
 
279 aa  95.1  1e-18  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_3413  binding-protein-dependent transport systems inner membrane component  31.65 
 
 
271 aa  94.7  1e-18  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0409101  normal  0.884011 
 
 
-
 
NC_009708  YpsIP31758_0355  putative ABC aliphatic sulfonates transporter, permease subunit  33.5 
 
 
264 aa  94.4  2e-18  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1210  binding-protein-dependent transport systems inner membrane component  28.39 
 
 
315 aa  94  2e-18  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_0438  binding-protein-dependent transport systems inner membrane component  34.03 
 
 
239 aa  94  2e-18  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.284515 
 
 
-
 
NC_013205  Aaci_2846  binding-protein-dependent transport systems inner membrane component  27.73 
 
 
260 aa  94.4  2e-18  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  hitchhiker  0.000143494  n/a   
 
 
-
 
NC_010465  YPK_0423  binding-protein-dependent transport systems inner membrane component  33.5 
 
 
264 aa  94.4  2e-18  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_19510  ABC transporter permease  29.44 
 
 
274 aa  93.6  3e-18  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_0464  binding-protein-dependent transport systems inner membrane component  30.64 
 
 
273 aa  92.8  5e-18  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_1347  binding-protein dependent transport system inner membrane protein  25.94 
 
 
260 aa  92.4  7e-18  Sulfurimonas denitrificans DSM 1251  Bacteria  hitchhiker  0.000000648082  n/a   
 
 
-
 
NC_009656  PSPA7_1679  ABC transporter permease  29 
 
 
274 aa  92  8e-18  Pseudomonas aeruginosa PA7  Bacteria  normal  0.451747  n/a   
 
 
-
 
NC_010681  Bphyt_2097  binding-protein-dependent transport systems inner membrane component  30.26 
 
 
286 aa  91.3  1e-17  Burkholderia phytofirmans PsJN  Bacteria  normal  0.961582  normal 
 
 
-
 
NC_010581  Bind_0552  binding-protein-dependent transport systems inner membrane component  27.8 
 
 
286 aa  91.3  1e-17  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.973794  normal 
 
 
-
 
NC_009439  Pmen_4330  binding-protein-dependent transport systems inner membrane component  28.25 
 
 
276 aa  90.5  2e-17  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.936191 
 
 
-
 
NC_011981  Avi_7221  ABC transporter membrane spanning protein (nitrate/sulfonates)  28.7 
 
 
282 aa  90.5  2e-17  Agrobacterium vitis S4  Bacteria  normal  0.735165  n/a   
 
 
-
 
NC_011757  Mchl_0379  binding-protein-dependent transport systems inner membrane component  32.77 
 
 
279 aa  90.5  2e-17  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1380  binding-protein-dependent transporter inner membrane component  30 
 
 
277 aa  90.9  2e-17  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.153307 
 
 
-
 
NC_009485  BBta_2535  putative taurine ABC transporter, permease protein  28.21 
 
 
282 aa  90.1  3e-17  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.254862  normal 
 
 
-
 
NC_007952  Bxe_B2638  ABC sulfonate transporter, inner membrane subunit  29.57 
 
 
279 aa  90.1  3e-17  Burkholderia xenovorans LB400  Bacteria  normal  0.0950643  hitchhiker  0.0000361652 
 
 
-
 
NC_011004  Rpal_2882  binding-protein-dependent transport systems inner membrane component  32.28 
 
 
268 aa  90.5  3e-17  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.80309  n/a   
 
 
-
 
NC_009439  Pmen_4321  binding-protein-dependent transport systems inner membrane component  35.6 
 
 
264 aa  90.1  3e-17  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.154719 
 
 
-
 
NC_007492  Pfl01_0254  binding-protein dependent transport system inner membrane protein  26.27 
 
 
279 aa  89.7  4e-17  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.57663 
 
 
-
 
NC_007951  Bxe_A2159  sulfate ester ABC transporter inner membrane protein  29.82 
 
 
283 aa  89.7  4e-17  Burkholderia xenovorans LB400  Bacteria  normal  0.514359  normal 
 
 
-
 
NC_002947  PP_0231  binding-protein-dependent transport systems inner membrane component  26.53 
 
 
279 aa  89.4  5e-17  Pseudomonas putida KT2440  Bacteria  normal  0.33405  hitchhiker  0.000710194 
 
 
-
 
NC_009832  Spro_1736  binding-protein-dependent transport systems inner membrane component  32.11 
 
 
264 aa  89.4  5e-17  Serratia proteamaculans 568  Bacteria  normal  0.440066  normal  0.144233 
 
 
-
 
NC_007953  Bxe_C0133  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  30.18 
 
 
283 aa  89.4  5e-17  Burkholderia xenovorans LB400  Bacteria  normal  0.744619  normal 
 
 
-
 
NC_009077  Mjls_2561  binding-protein-dependent transport systems inner membrane component  29.36 
 
 
279 aa  89  6e-17  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_0024  binding-protein-dependent transport systems inner membrane component  32.5 
 
 
264 aa  89  7e-17  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_2417  binding-protein-dependent transport systems inner membrane component  32.23 
 
 
300 aa  89  7e-17  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0833403  normal 
 
 
-
 
NC_013421  Pecwa_0030  binding-protein-dependent transport systems inner membrane component  32.5 
 
 
264 aa  89  8e-17  Pectobacterium wasabiae WPP163  Bacteria  normal  0.050552  n/a   
 
 
-
 
NC_011772  BCG9842_B2313  putative sulfonate ABC transporter, permease protein  30 
 
 
282 aa  88.6  8e-17  Bacillus cereus G9842  Bacteria  normal  0.797662  hitchhiker  0.00000011817 
 
 
-
 
NC_011725  BCB4264_A2930  putative sulfonate ABC transporter, permease protein  30 
 
 
282 aa  88.6  9e-17  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_2524  binding-protein-dependent transport systems inner membrane component  28.9 
 
 
279 aa  87.8  1e-16  Mycobacterium sp. MCS  Bacteria  normal  0.667278  n/a   
 
 
-
 
NC_008705  Mkms_2569  binding-protein-dependent transport systems inner membrane component  28.9 
 
 
279 aa  87.8  1e-16  Mycobacterium sp. KMS  Bacteria  normal  0.568124  normal 
 
 
-
 
NC_007005  Psyr_4875  binding-protein dependent transport system inner membrane protein  33.33 
 
 
265 aa  87.4  2e-16  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746085  normal 
 
 
-
 
NC_009720  Xaut_4051  binding-protein-dependent transport systems inner membrane component  27.88 
 
 
273 aa  87.8  2e-16  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.395379 
 
 
-
 
NC_009656  PSPA7_1171  taurine ABC transporter permease  28.84 
 
 
272 aa  87.8  2e-16  Pseudomonas aeruginosa PA7  Bacteria  normal  0.104716  n/a   
 
 
-
 
NC_007511  Bcep18194_B2062  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  30.7 
 
 
280 aa  86.7  3e-16  Burkholderia sp. 383  Bacteria  normal  0.332807  normal  0.624531 
 
 
-
 
NC_010511  M446_2187  binding-protein-dependent transport systems inner membrane component  32.8 
 
 
277 aa  87  3e-16  Methylobacterium sp. 4-46  Bacteria  normal  0.19464  normal  0.461096 
 
 
-
 
NC_008531  LEUM_1153  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  28.91 
 
 
258 aa  86.7  3e-16  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  0.23101  n/a   
 
 
-
 
NC_009636  Smed_1127  binding-protein-dependent transport systems inner membrane component  29.41 
 
 
267 aa  86.7  3e-16  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_1648  binding-protein-dependent transport systems inner membrane component  32.76 
 
 
283 aa  86.7  3e-16  Burkholderia phymatum STM815  Bacteria  normal  0.189471  normal  0.0804385 
 
 
-
 
NC_009428  Rsph17025_0750  binding-protein-dependent transport systems inner membrane component  27.88 
 
 
284 aa  86.3  4e-16  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.546304 
 
 
-
 
NC_010625  Bphy_7235  binding-protein-dependent transport systems inner membrane component  29.55 
 
 
285 aa  86.3  4e-16  Burkholderia phymatum STM815  Bacteria  normal  0.266674  normal 
 
 
-
 
NC_008688  Pden_5126  binding-protein-dependent transport systems inner membrane component  31.91 
 
 
280 aa  86.7  4e-16  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_4981  binding-protein-dependent transport systems inner membrane component  25.42 
 
 
279 aa  86.3  5e-16  Pseudomonas putida W619  Bacteria  normal  normal  0.588836 
 
 
-
 
NC_008687  Pden_4168  binding-protein-dependent transport systems inner membrane component  28.34 
 
 
272 aa  86.3  5e-16  Paracoccus denitrificans PD1222  Bacteria  normal  0.95605  normal  0.544796 
 
 
-
 
NC_004578  PSPTO_5315  aliphatic sulfonates ABC transporter, permease protein  34.36 
 
 
265 aa  85.9  6e-16  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0492  sulfonate/nitrate/taurine transport system permease protein  27.69 
 
 
274 aa  85.9  6e-16  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.218596  normal  0.461447 
 
 
-
 
NC_011666  Msil_0768  binding-protein-dependent transport systems inner membrane component  27.85 
 
 
286 aa  85.5  7e-16  Methylocella silvestris BL2  Bacteria  n/a    normal  0.113876 
 
 
-
 
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