| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1865 |
|---|
| Symbol | |
|---|
| ID | 4173050 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 2257576 |
|---|
| End bp | 2258346 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638054874 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_661439 |
|---|
| Protein GI | 109898184 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0600] ABC-type nitrate/sulfonate/bicarbonate transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCATTTT TGAGCCAGGC TACGCGTCGC TGGTTGTTTA TCCGTATAGG GACAGTCTTG
CTCGTTGGGG CAATCTGGCA AGCGGCCGCG TGGTTTGTGG CCAGCCCTGA TTTCCCTAGC
TGCACTGGGG TGCTCAGCAG CATTCATTTT CATCTCACCC AAGGAGATAT GCTTTTAAAT
CTATGGGTCA CGCTCAAGCG TGTGGCCATC AGTTTTGTTA TTTCAATGCT CATTGGTGTC
GTCATAGGCG TGCTGATGGG AACGTATTCA AAGCTCAATC GATTGACTGA TACGGCGTTG
ATCATCGCTT TAAATGTACC TGCTTTGGTA ACCATTTTGC TGTGTTATAT TTGGTTCGGT
TTGGTGGAAA GTGCTGCGAT TGCCGCGGTG GTGCTAAACA AAATCCCTAC GGTTGTGGTG
ATGATCCGAG AAGGCGCGCG GGTCGTGGAT CACGATTTGC TGGCCGTGGC TAAAATCTAT
CGATTGTCAC CCAGGCGTAC CTTTTTCAAG GTGTTTTTGC CGCAATTGTA TCCCTTTATC
ATGGCATCCG CTCGCTCTGG GCTGTCATTG ATCTGGAAAA TTGTCCTCGT TGTAGAGTTA
CTTGGACGCA GTGACGGAGT GGGCTTTGCA CTAAATACCC AATTTCAGTT CTTTGATATC
ACTGGTATTT TAGCTTACAC ATGTGCCTTT ATCAGCATCA TACTGTGTAT CGAAGCCGTT
GTTTTTCGTC CACTTGATAG GTTAATCGCT CGGGGAAGTG TGCATGGCTG A
|
|---|
| Protein sequence | MSFLSQATRR WLFIRIGTVL LVGAIWQAAA WFVASPDFPS CTGVLSSIHF HLTQGDMLLN
LWVTLKRVAI SFVISMLIGV VIGVLMGTYS KLNRLTDTAL IIALNVPALV TILLCYIWFG
LVESAAIAAV VLNKIPTVVV MIREGARVVD HDLLAVAKIY RLSPRRTFFK VFLPQLYPFI
MASARSGLSL IWKIVLVVEL LGRSDGVGFA LNTQFQFFDI TGILAYTCAF ISIILCIEAV
VFRPLDRLIA RGSVHG
|
|---|
| |