25 homologs were found in PanDaTox collection
for query gene PP_3062 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_004578  PSPTO_3393  tail tape measure protein  54.71 
 
 		 916 aa  779    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_010322  PputGB1_1215  TP901 family phage tail tape measure protein  74.29 
 
 		 1314 aa  1313    Pseudomonas putida GB-1  Bacteria  normal  1  hitchhiker  0.00365241 
 
 
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NC_002947  PP_3062  pyocin R2_PP, tail length determination protein, putative  100 
 
 		 1089 aa  2147    Pseudomonas putida KT2440  Bacteria  normal  1  normal  0.0911019 
 
 
-
 
NC_008390  Bamb_1857  pyocin R2_PP, tail length determination protein, putative  52.35 
 
 		 814 aa  533  1e-150  Burkholderia ambifaria AMMD  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_08120  putative tail length determinator protein  27.74 
 
 		 745 aa  208  5e-52  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.000000076963  hitchhiker  0.000608309 
 
 
-
 
NC_002977  MCA2914  prophage MuMc02, TP901 family tail tape measure protein  28.6 
 
 		 993 aa  171  8e-41  Methylococcus capsulatus str. Bath  Bacteria  normal  1  n/a   
 
 
-
 
NC_009656  PSPA7_0769  putative tail length determinator protein  26.15 
 
 		 754 aa  160  2e-37  Pseudomonas aeruginosa PA7  Bacteria  normal  0.961122  n/a   
 
 
-
 
NC_009829  Spro_4911  TP901 family phage tail tape measure protein  27.05 
 
 		 814 aa  121  7.999999999999999e-26  Serratia proteamaculans 568  Bacteria  normal  1  normal  0.716595 
 
 
-
 
NC_009667  Oant_1488  TP901 family phage tail tape measure protein  27.98 
 
 		 781 aa  114  1.0000000000000001e-23  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
-
 
NC_009720  Xaut_4487  TP901 family phage tail tape measure protein  30.62 
 
 		 666 aa  110  1e-22  Xanthobacter autotrophicus Py2  Bacteria  normal  0.108183  normal  0.0686634 
 
 
-
 
NC_010465  YPK_0190  hypothetical protein  30.26 
 
 		 735 aa  109  2e-22  Yersinia pseudotuberculosis YPIII  Bacteria  normal  1  n/a   
 
 
-
 
NC_009668  Oant_3691  hypothetical protein  32.27 
 
 		 902 aa  99  5e-19  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
-
 
NC_011666  Msil_1528  phage tail tape measure protein, TP901 family  27.55 
 
 		 625 aa  95.5  5e-18  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_007964  Nham_3322  Phage tail tape measure protein TP901, core region  24.49 
 
 		 743 aa  92  5e-17  Nitrobacter hamburgensis X14  Bacteria  normal  0.787637  n/a   
 
 
-
 
NC_007604  Synpcc7942_0750  Phage tail tape measure protein TP901, core region  24.71 
 
 		 950 aa  90.9  1e-16  Synechococcus elongatus PCC 7942  Bacteria  normal  1  normal  0.173353 
 
 
-
 
NC_011083  SeHA_C4549  putative phage tail protein  23.28 
 
 		 784 aa  85.9  0.000000000000004  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.30814  normal  0.374859 
 
 
-
 
NC_011149  SeAg_B4465  putative phage tail protein  23.28 
 
 		 784 aa  85.9  0.000000000000004  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  1  n/a   
 
 
-
 
NC_011769  DvMF_0743  hypothetical protein  27.47 
 
 		 646 aa  84  0.00000000000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  1 
 
 
-
 
NC_011080  SNSL254_A4550  putative phage tail protein  26.32 
 
 		 784 aa  84.3  0.00000000000001  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.423372  normal  0.711096 
 
 
-
 
NC_007925  RPC_1557  Phage tail tape measure protein TP901, core region  29.36 
 
 		 722 aa  82  0.00000000000006  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  0.0138329 
 
 
-
 
NC_011071  Smal_0884  phage tail tape measure protein, TP901 family  23.4 
 
 		 823 aa  80.9  0.0000000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0603938  normal  1 
 
 
-
 
NC_012917  PC1_1569  phage tail tape measure protein, TP901 family  22.05 
 
 		 825 aa  78.6  0.0000000000007  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.258062  n/a   
 
 
-
 
NC_011989  Avi_2337  Phage tail tape measure protein  28.89 
 
 		 599 aa  77.4  0.000000000001  Agrobacterium vitis S4  Bacteria  normal  1  n/a   
 
 
-
 
NC_013421  Pecwa_2893  phage tail tape measure protein, TP901 family  21.01 
 
 		 817 aa  72  0.00000000006  Pectobacterium wasabiae WPP163  Bacteria  normal  0.772057  n/a   
 
 
-
 
NC_009901  Spea_3309  hypothetical protein  45.9 
 
 		 283 aa  46.2  0.004  Shewanella pealeana ATCC 700345  Bacteria  normal  0.461765  n/a   
 
 
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