| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1215 |
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| Symbol | |
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| ID | 5868975 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 1368824 |
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| End bp | 1372768 |
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| Gene Length | 3945 bp |
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| Protein Length | 1314 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641546315 |
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| Product | TP901 family phage tail tape measure protein |
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| Protein accession | YP_001667459 |
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| Protein GI | 167032228 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3941] Mu-like prophage protein |
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| TIGRFAM ID | [TIGR01760] phage tail tape measure protein, TP901 family, core region |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.00365241 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCAGGCA AACTAGCGTT ATCGCTGGTG ATCGGGGGTG CTGTCGCCTC GTCGGTAGGC
GCTGCATTCA AGACGGTCGA GAGCGGCATC CAGAAGCTGG AAGCCAAAGG CAACAGGGCC
AAGGTGCTGA AAAGCACCAT TGGCGAAACG GTCAAGCTGC GCGAAGAGTG GAAGCGTGCA
CATGACAGCG GCGCTGCCGG CGCCGACAAA CTGCTGCGCA AGCTGGACAG CAACCTGGAT
GCTTTGCGCA AGCAAGGCAT TGAGGTTGGG CGCCTCAGTC GCGAGTATCA GCGGCTGGGG
CGCGAGGCGA GAGCCGCCGA TCTGCAACTG AAGGGCCACC AGCAGCTGCA GGCGGGCAAG
GAATCGCTCA AGTCGAACAT CGGCAAGGCG GTGGTGGCCA CGGGCGCAGC TGCTGTGCCG
ACGATGATCA GTGCGAACTA TCAAGCGATC ATCCGTGACA TTGCGATCAA GGCCGATATT
GTCAATAAAC CGGAGGAGCG GCAGCTCACC CGGACGGTAA TTGATACGGC CAAAGACACT
GGTATGTCGC GTAATGACGT GGCCGACCTG GTCAACCAAC TGGTCGGCGC CGGTATGGAC
CTCGACAAGG CGCTGTCGTA TGCGCCGGTG GCTGCCAAGT TCGCTATCGG CCAAGGCTCC
TCTGGCGTCG ATACGGCGTC GATGATTCAG GCGCTGCAGC AAAACGCCAA GATCAGCGAT
CCGAAGGTCA TGCAGCAGGC GCTGGAAGCT ATCGCTTACC AAGGCCAGGC GGGCAGCTTC
GAGGCCAGCG ACATGGCCAA GTGGTTCCCG CAACTGCTCG CCGGCATGGA GAAGAACGGT
ATCACCGGGC TGGATGCGGT GACCTCGCTG GGCTCGATGC TGCAAGTCCA GATGAAGACC
GCCGGCAGTT CGGACGAGGC GGCGAACAAC TTCAAGAACT GGATGGAGAA GATCGGTTCT
GGCGAGGTGG TGAAGGCCTA CAAGGATGCG GGGATCGATT ACCAGTCCTC ACTGAATACC
GGTCTGCAGA AGGGCATGAA CGTCATCGAG GCGTCCATGG CCCTGGCCAT GAGGTACGTC
GAGGCCACTG ACCCGGCAAA GGCAAAGAAG ATCGAGGCCG CCAAGGCCAA AATCGACAAG
GAAGTCGACC CGGAAAAAGC CAAGGCAGCG CTGGATGCCC TGGAAAAGGC CCTGCGCACT
GGCGATATCT TCGCTGACAT GCAGGTCAAG GCCGCGCTCA CAGCCTACGG GCAAAACCGG
GGCTTGTATG AGGAGCTCAA AGCCGACTCG CAGAAAGCCT CGGGCATCCT CGATAAGAAC
CTTGCTGAGC GCCGAGAGAC CTCTGCGCAG CAGTGGGCCG AGCTGGGGCA GGCGGTCAAC
GACTCGATGC GCAGCATTGG CGATGCCATC CGCCCCGCGA CCGACCTGGT GGCCAAGGGG
CTGACCTCGG TCGCGCATGG GATGACCTCC CTTGCGGACA ACTTCCAGCC GGTCGTATTG
GGCATCGCCG GCATCACGGC GGCGGTTGTA GCGTTCATGA CCGCGTCCAG TGCACTGAAA
ATCGGGCGGG GCGTATTCAA CATCGCTCGC GGGCGAAGCC TTGATCGCTT GGCCGGTCGC
CCAGGGCGTA ATGACCGGGC GCCCATTGAA CTGCCGAAGA CGGGCAGTAG GGTGGTCGAT
ACCGGTCTCG GCTTGCTGGG CAAGTTGTTC CCTGCGACGC AGCCGGAAGT GACATCCGCA
AATGAACCGC AGGCCGGCGG CAATGACACC CAGCGCGTAT TTGTGGTTAA CGCCGATGCG
TTCAACGGGA TCGGCAGCAG CGTTGCCAAT AGTGCCCCTG CCGCCCCTGC TCGGGGGAGT
CGCAGAAGCC GACGTCGTGC CCGTCGACGC GAGAGCAGGC AAAGCGCCAC AGCCCGGCCG
AAGCAGGTGG TGGGGCAGAC AAAGCTTCCA TCCGTACGGC CCGCTATCCC TGCGTCTGTA
CCTGCGGCTC TACCGAAAGC GGTGACCGGT GTTGAGGAGT TGGGCAGGGT CGCTCGCTCG
GTGCGTGGCG TTACCCGTCT TGCCAAGCGA TTGCCTGGCG GGAATGTGGT TGATGTCGGC
GCTGCCGCGA TTGATGTCGC GATCAATGCC AGCTCTCAGG AAGAGAAAGC GGAAGGTTAT
GGGGGCGCGG CCGGCAGTCT CGCAGGGACT CTCGCGGGCG CCGCTGCAGG GGCGGCCATC
GGTTCGGTAG TGCCAGTTAT TGGTACTGCA GTGGGTGGTG CTGTCGGCGC CGTGCTTGGC
GGCATGGGTG GCGAATCGCT GGGCAGTTGG CTGGGTAAAC GCTGGTTTGG TGACGAGCAA
ACTGATGCGG AGGACAAGCC AACGCCGGAA AGCCCGCAGA TGCCGGGGCA GGCTTTGCAG
GCCACGGTGC TCCATGCGGA GGAAGACAAG CCGGAAGGCA GGGCAGAGCA GCCGCCACCA
TTGCCTGCAG CGCCGGTACC GGCATTGGGT GAGACCGTGC GCAACGTACC GGCCCCAACG
CCTATCGCGC CCGTAGTGGC ATACGATCCC CTCAGCCCCG GTGCAAAAGA TCCGTACCTG
TTGCCCACGT TGACAGACAA CAAGGTCCCT TTCCCGGGTG CGCCCTTGGT GCGGCCGCCG
GTTCAGCCTG AACCGGTGCC CGAGCCTCAG CGAGCATCAA TGCGGCAGGA GCCGCCGAAG
CTGGGTGACA CGGTAAAAGC CATGGCGCCT CCGCCACCTG CCGCTCCAGC AGTGTCATAT
GACCCGCTCG ATCCGGGGGC GAAGGACCCG TACCTGTTGC CGGCTCTGAC GGCGAGCAAA
GTACGCTTCC CTGGTGCGCC CCTGGTGCGG CCGCAGGTTC AACCCGAGCC AGTGCCTGAG
CCGGAACCGG CACCAAAGGA GCCGCCGAAG CTGGGTGGCA CGGTGAGAGC CGCAGCCGCT
CCGGCAGTGT CGTACGACCC GCTCGGCCCT GAGGCCAAGG ATCCATACCT GTTGCCGGCG
CTGACGGCCA ACAAAGTACG TTTTCCGGGT GCGCCCCTGG TGCGGCCGAC GGTTCAACCG
GAGTCCGTGC CCGAGCCTGA GCCAGGTCCC CTGCTGCAGG AGCCGCCGCG GTTGGGCGAC
ACAGTGCGAG CGTTGGCCGC CCCGCCACCG GTCGAGCCGG CTGCATCGTA TGACCCGGTC
AATCCCGAGG CCAAGGACCC ATATCTGTTG CCGGCACTGA CGGCCAACAA GGTGCGATTC
CCAGGTGAGC CCTTGGTGCG GCCGCCGGTA CAACCTGAGC CGGTGATCGA GTCTGAACCA
GTGCCAGGGC TGCAGGAGCC GCTCAAGCTG GGTGACACGG TGAAAGCCGT GGCCGCTCCG
GCGCCAGCCA CCCCATCAGT GTCATATGAT CCGCTTGAGC CGGGGTCCAA GGATCCGTAT
CTGTTGCCGG CTCTGACGGC AAACAAGGTG CGCTTCCCTG GTGCAGGGCT GGTGCTACCA
CCAGCTCAGC CGCAACCTGC GTCAGAAAAC CCTCCGACGA GACTGGGTGA GGCGGTGCGC
GAGGCCCCAG CTACGTCGAC GCCGGCTCCA GTGAGCATCA ACAACCGCGA GCGCAAGCCT
GCAGCTGCTG GTGTTTCACC TCAAGCGATT CCCCGGCCCG ATACCTTGCC GGCGGGGTTG
GGGGACCTGG TACGCGACAT GGTGGCCAAA TCGGCGCCTG CCCCGCCCCG CATGCCCGAC
CTTGTCCAGT CAGCCAAAGT CTCAGCGCCG CCCCCGGCTC CGAAGGTTGA ACAGTCGTTC
ACCTTCGCGC CGAGTATTCC GATCAACGTC ACTGGCGATG TGAAGGACCC GGCGGAGCTA
CTGCGCGAGC TGGAATCAGG TGTGAGGCGG CTGTTTGATG GCTGGCAGCG TGAGTTGTCT
GCGCGCACGG CCTCGACCCA ATTGTTCGAT CAACCCCATG TGTAA
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| Protein sequence | MAGKLALSLV IGGAVASSVG AAFKTVESGI QKLEAKGNRA KVLKSTIGET VKLREEWKRA
HDSGAAGADK LLRKLDSNLD ALRKQGIEVG RLSREYQRLG REARAADLQL KGHQQLQAGK
ESLKSNIGKA VVATGAAAVP TMISANYQAI IRDIAIKADI VNKPEERQLT RTVIDTAKDT
GMSRNDVADL VNQLVGAGMD LDKALSYAPV AAKFAIGQGS SGVDTASMIQ ALQQNAKISD
PKVMQQALEA IAYQGQAGSF EASDMAKWFP QLLAGMEKNG ITGLDAVTSL GSMLQVQMKT
AGSSDEAANN FKNWMEKIGS GEVVKAYKDA GIDYQSSLNT GLQKGMNVIE ASMALAMRYV
EATDPAKAKK IEAAKAKIDK EVDPEKAKAA LDALEKALRT GDIFADMQVK AALTAYGQNR
GLYEELKADS QKASGILDKN LAERRETSAQ QWAELGQAVN DSMRSIGDAI RPATDLVAKG
LTSVAHGMTS LADNFQPVVL GIAGITAAVV AFMTASSALK IGRGVFNIAR GRSLDRLAGR
PGRNDRAPIE LPKTGSRVVD TGLGLLGKLF PATQPEVTSA NEPQAGGNDT QRVFVVNADA
FNGIGSSVAN SAPAAPARGS RRSRRRARRR ESRQSATARP KQVVGQTKLP SVRPAIPASV
PAALPKAVTG VEELGRVARS VRGVTRLAKR LPGGNVVDVG AAAIDVAINA SSQEEKAEGY
GGAAGSLAGT LAGAAAGAAI GSVVPVIGTA VGGAVGAVLG GMGGESLGSW LGKRWFGDEQ
TDAEDKPTPE SPQMPGQALQ ATVLHAEEDK PEGRAEQPPP LPAAPVPALG ETVRNVPAPT
PIAPVVAYDP LSPGAKDPYL LPTLTDNKVP FPGAPLVRPP VQPEPVPEPQ RASMRQEPPK
LGDTVKAMAP PPPAAPAVSY DPLDPGAKDP YLLPALTASK VRFPGAPLVR PQVQPEPVPE
PEPAPKEPPK LGGTVRAAAA PAVSYDPLGP EAKDPYLLPA LTANKVRFPG APLVRPTVQP
ESVPEPEPGP LLQEPPRLGD TVRALAAPPP VEPAASYDPV NPEAKDPYLL PALTANKVRF
PGEPLVRPPV QPEPVIESEP VPGLQEPLKL GDTVKAVAAP APATPSVSYD PLEPGSKDPY
LLPALTANKV RFPGAGLVLP PAQPQPASEN PPTRLGEAVR EAPATSTPAP VSINNRERKP
AAAGVSPQAI PRPDTLPAGL GDLVRDMVAK SAPAPPRMPD LVQSAKVSAP PPAPKVEQSF
TFAPSIPINV TGDVKDPAEL LRELESGVRR LFDGWQRELS ARTASTQLFD QPHV
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