| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PP_3062 |
|---|
| Symbol | |
|---|
| ID | 1043420 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida KT2440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002947 |
|---|
| Strand | + |
|---|
| Start bp | 3441239 |
|---|
| End bp | 3444508 |
|---|
| Gene Length | 3270 bp |
|---|
| Protein Length | 1089 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637146484 |
|---|
| Product | pyocin R2_PP, tail length determination protein, putative |
|---|
| Protein accession | NP_745206 |
|---|
| Protein GI | 26989781 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3941] Mu-like prophage protein |
|---|
| TIGRFAM ID | [TIGR01760] phage tail tape measure protein, TP901 family, core region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0911019 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGGCA AGGTAGCGTT ATCGCTGGTG ATCGGCGGCG CCGTCGCGTC GTCGCTCGGC
GCCGCGTTCA AGACCGCCGA AAACGGCATC CAGAAGCTGG AAGCCAAGGG CAACAAGGCC
AAGGTGCTGA AAAGCACCAT TGGCGAAACC ATCAAGCTGC GCGAGGAATG GAAGCGCGCG
CACGACAGCG GCGCGGCCGG CGCCGACAAG TTGCTGCGCA AGCTGGACAG CAACCTGGAT
TCGTTGCGCA AGCAGGGGAT CGAGGTCGGT AAGCTCGGTC GCGAGTACCA GCGCCTTGGG
CGCGAGGCGC GGGCCGCCGA TCTGCAGCTC AAGGGTCACC AGCAGCTGCA GGCGGGCAAG
GAATCGCTCA AGTCGAATAT CGGCAGGGCG GTGGTGGCTA CGGGCGCCGC TGCTGTGCCG
ACGATGATCA GCGCGAACTA TCAAGCGATC ATCCGTGACA TCGCGATCAA GGCTGATATC
GCCAACAAGC CCGAGGAACA GCAGCTTACC CGGACGGTGA TCGGCACGGC CAAAGACACG
GGTATGTCAC GCAATGACGT AGCCGACCTG GTCAACCAGC TGGTCGGCGC CGGCATGGAT
CTGGACAAGG CGCTGTCGTA TGCGCCGGTC GCGGCCAAGT TCGCGGTCGG CCAAGGCGCC
TCGGGCGTCG ACACCGCGTC GATGATCCAG GCGTTGGAGC AAAACGCCAA GATCAGCGAC
CCCAAGGTCA TGCAGCAGGC ACTGGAGGCC ATCGCCTACC AAGGCCAGGC GGGCAGCTTC
GAGGCCAGCG ACATGGCCAA GTGGTTCCCG CAACTGCTGG CCGGCATGGA GAAGAACGGC
ATCACCGGGC TGGATGCGGT GACCTCGCTG GGCTCCATGC TGCAGGTCCA GATGAAGACC
GCCGGCAGTT CCGACGAGGC GGCGAACAAC TTCAAGAACT GGATGGAGAA GATTGGCGCC
GGTGATATCA AGAAGGCTTA CAGCGATGTG GGCATTGATT ATCAGGCGTC ACTGAATACC
GGCCTGCAGA AGGGCATGAA CGTCATTGAG GCGTCCATGG CCCTGGCCAT GCGTTACGTC
GAGAAGACCG ACCCGGCCAA GGCCAAGCAG ATCAAGGACG CCCAGGCCAA GATCGACAAG
GAAGTCGACC CGGAGAAGGC CAAGGCGGCA CTGGAAGCGC TGGAGAAGAC CCTGCGCACC
GGCGATATCT TCGCCGACAT GCAGGTCAAG GCGGCGCTCA CCGCCTACGG GCAGAACCGG
GGCCTGTATG AGGAACTTAA GGCCGACTCC AAAAAGGCCT CGGGCATCCT CGACAAGAAC
CTGGCTGAGC GCCGCGAGAC CTCGGCGCAG CAGTGGGCCG AGCTGGGCCA GGCGGTGGAC
GATTCAATGC GCAGCATTGG CGATGCCATC CGCCCGGCCA CCGACATGGC GGCGCAGGGG
CTGACCAAGG TCGCCCATGG CATCACCTCG CTGTCGGATC AGTTCCCGTC GATCGCCATG
GGGATTGGCG GCATTACGGC GGCGGTAATT GCATTCCTGA GTGCGCGCAG TGCGCTGCGT
GTCGGTCGCG GGGTGTTCAA CATCGCCATG GGCCGTGGCC TGGAAGGGTT CGCTGGCCGC
GCTGGCAAGG CCGAGCGGGC GCCGATCAAG TTGCCCAAGA CCGGCAGCAA GGTGGTCGAC
ACCGGCCTTG GGCTGCTGGG CAAGGTGTTT TCGGCGGGCT CGAAAGGGGC TGCCCAAGCC
GATGATCCCG GCGCGGCCGC CAATGACACC CAGCGCGTAT TCGTGGTCAA CGCTGATGCA
ATAGGCGGGA TCGGCAGTAG CGTTGCAAAT AGCGGCCCTG CAAGGGGCAG TCGCAGAAGT
CGGCGCCGGG AGCGACGGCG CGCAGCGCGA CAGGGCGCCC CAGTGCGGCC TGCACCGGCC
GTTGAGGCAC CCAAGCCGGC CAAGGCTGCC GTGGCTAAGG TTCGGCCGCT GCCTGCAGCG
TTGTCGGCCC TGACCGCCGC CGATGATCTG GGCAAGGTGG CGCGCTCGGT GCGCGGTGTT
TCGCGTCTTG CCAAGAATCT ACCAGGAGGC AACATCATCG ATGCCGGTGC GGCTGCGATC
GATGTCGCGC TGAACGCTGA GACTAAGGAC GAAAAGGCCG AGGGCTACGG CGGCGCTGCC
GGCAGCCTGG CGGGCACCCT TGCCGGTGCT GCAGCGGGGG CGGCTATTGG CTCCGTGGTG
CCGGTGATCG GTACCGCTGT GGGTGGCGCG GTCGGCGCTG TCCTTGGTGG CATGGGGGGC
GAGTCGTTTG GGGGGTGGCT GGGCAAGCGA TGGTTTGGTG ACGAGCCGGC CGACGATCAA
GCCGAGCCGG AATCGCCGCC GGCACTGGGT AAAGCGTTAC GCGTAACGGT GATGCCAGCC
AAGGAAGTCG AGCCTGAGCC CGCCACGGCT CCGGTCAAGG CTGATCCGGC AGTGTCGTAT
GATCCGCGCG ACCCGGCATC GAAAGACCCG GTCGTGTTGC CGGCACTCGC GGCCGACAAG
GTGCGTTTCC CTGGTGCTGA TCTGGTGCGG CCACCGGCCA GCCCTGAGTC GCCGGCAGAT
CCTGCAGCAC CGGAGGCACA ACCCGAGCCG TCGGTGCCCA AGCTGGGCGA TACGGTGCGG
GAGGTGGCCA GCCCGGCGCC GGTGGAGCCA GCGGTGTCGT ATGACCCGCG TGACCCAGCG
TCGAAAGATC CGTTCCTGCT GCCGGCGCTG ACCGCCAACA AGGTGCGGTT CCCTGGTGCT
GGACTGGTAC GGCCGCAGGC CGAGCCCGAG CCGCCGACAC CCAAACTGGG GGCTGCGGTG
CGGGAAGCAG CACCGGCCCC GGTACCGGCC AAGCCCGTAG TGTCGTATGA CCCGCGCGAC
CCGGCGTCGA AAGATCCGTT CCTGTTGCCC GCCATGACGG CCAACAAGGT GCGGTTCCCA
GGCGCCGACC TTGTGCGGCC ACAGCCTCAA CCCGAGCCAC CGGCCGTACT GGGTGATGTG
GTGCGCGAGA TGGCCAAGGC CGCGCCATCG GCGCCCAAGC TGCCGGAGGT GCCGCCACCT
GCTAAGGCCT CACCGCCACC GGCGCCGAAG GTGGACAACA CATTCACATT CGCCCCGGTT
ATGCCGCTCA CTGTCCATGG CGATGTTAAA GACCCAAACC AATTGCTGAA CGAAATGGCA
AACGGTATGC GCGGGCTGTT TGACGCCTGG CAGCGCGAGG TGGCTGCGCG CACGTCCTCG
GCGCAGCTGT TCGATCAACC CCACGTTTAA
|
|---|
| Protein sequence | MAGKVALSLV IGGAVASSLG AAFKTAENGI QKLEAKGNKA KVLKSTIGET IKLREEWKRA
HDSGAAGADK LLRKLDSNLD SLRKQGIEVG KLGREYQRLG REARAADLQL KGHQQLQAGK
ESLKSNIGRA VVATGAAAVP TMISANYQAI IRDIAIKADI ANKPEEQQLT RTVIGTAKDT
GMSRNDVADL VNQLVGAGMD LDKALSYAPV AAKFAVGQGA SGVDTASMIQ ALEQNAKISD
PKVMQQALEA IAYQGQAGSF EASDMAKWFP QLLAGMEKNG ITGLDAVTSL GSMLQVQMKT
AGSSDEAANN FKNWMEKIGA GDIKKAYSDV GIDYQASLNT GLQKGMNVIE ASMALAMRYV
EKTDPAKAKQ IKDAQAKIDK EVDPEKAKAA LEALEKTLRT GDIFADMQVK AALTAYGQNR
GLYEELKADS KKASGILDKN LAERRETSAQ QWAELGQAVD DSMRSIGDAI RPATDMAAQG
LTKVAHGITS LSDQFPSIAM GIGGITAAVI AFLSARSALR VGRGVFNIAM GRGLEGFAGR
AGKAERAPIK LPKTGSKVVD TGLGLLGKVF SAGSKGAAQA DDPGAAANDT QRVFVVNADA
IGGIGSSVAN SGPARGSRRS RRRERRRAAR QGAPVRPAPA VEAPKPAKAA VAKVRPLPAA
LSALTAADDL GKVARSVRGV SRLAKNLPGG NIIDAGAAAI DVALNAETKD EKAEGYGGAA
GSLAGTLAGA AAGAAIGSVV PVIGTAVGGA VGAVLGGMGG ESFGGWLGKR WFGDEPADDQ
AEPESPPALG KALRVTVMPA KEVEPEPATA PVKADPAVSY DPRDPASKDP VVLPALAADK
VRFPGADLVR PPASPESPAD PAAPEAQPEP SVPKLGDTVR EVASPAPVEP AVSYDPRDPA
SKDPFLLPAL TANKVRFPGA GLVRPQAEPE PPTPKLGAAV REAAPAPVPA KPVVSYDPRD
PASKDPFLLP AMTANKVRFP GADLVRPQPQ PEPPAVLGDV VREMAKAAPS APKLPEVPPP
AKASPPPAPK VDNTFTFAPV MPLTVHGDVK DPNQLLNEMA NGMRGLFDAW QREVAARTSS
AQLFDQPHV
|
|---|
| |