34 homologs were found in PanDaTox collection
for query gene TK90_2779 on replicon NC_013930
Organism: Thioalkalivibrio sp. K90mix



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013930  TK90_2779  cold-shock DNA-binding domain protein  100 
 
 
188 aa  393  1e-109  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.886497  normal 
 
 
-
 
NC_010087  Bmul_5582  cold-shock DNA-binding domain-containing protein  33.33 
 
 
193 aa  76.3  0.0000000000002  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_2290  cold-shock DNA-binding domain-containing protein  39.39 
 
 
68 aa  46.6  0.0002  Meiothermus ruber DSM 1279  Bacteria  normal  0.388252  hitchhiker  0.00970612 
 
 
-
 
NC_007912  Sde_1909  cold-shock DNA-binding protein family protein  34.38 
 
 
69 aa  45.8  0.0004  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.00215125  normal 
 
 
-
 
NC_010501  PputW619_1128  cold-shock DNA-binding domain-containing protein  37.5 
 
 
69 aa  44.7  0.0008  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_4313  cold-shock DNA-binding domain-containing protein  37.5 
 
 
69 aa  44.7  0.0008  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009718  Fnod_1732  cold-shock DNA-binding domain-containing protein  36.92 
 
 
66 aa  44.7  0.001  Fervidobacterium nodosum Rt17-B1  Bacteria  unclonable  0.0000000000101176  n/a   
 
 
-
 
NC_009718  Fnod_0028  cold-shock DNA-binding domain-containing protein  35.38 
 
 
66 aa  44.3  0.001  Fervidobacterium nodosum Rt17-B1  Bacteria  unclonable  0.00000000000670362  n/a   
 
 
-
 
NC_014210  Ndas_1879  cold-shock DNA-binding domain protein  35.38 
 
 
70 aa  43.5  0.002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.753141 
 
 
-
 
NC_002947  PP_0985  cold-shock domain-contain protein  36.36 
 
 
165 aa  43.5  0.002  Pseudomonas putida KT2440  Bacteria  normal  0.693181  normal 
 
 
-
 
NC_008148  Rxyl_1247  cold-shock DNA-binding protein family protein  34.92 
 
 
197 aa  43.5  0.002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0572513  n/a   
 
 
-
 
NC_002947  PP_1099  cold-shock domain-contain protein  36.51 
 
 
69 aa  42.7  0.003  Pseudomonas putida KT2440  Bacteria  normal  0.0660556  normal 
 
 
-
 
NC_009439  Pmen_1407  cold-shock DNA-binding protein family protein  36.51 
 
 
69 aa  42.7  0.003  Pseudomonas mendocina ymp  Bacteria  normal  0.0231172  normal  0.970454 
 
 
-
 
NC_009512  Pput_1139  cold-shock DNA-binding domain-containing protein  36.51 
 
 
69 aa  42.7  0.003  Pseudomonas putida F1  Bacteria  normal  0.159877  normal  0.955199 
 
 
-
 
NC_009832  Spro_1182  cold-shock DNA-binding domain-containing protein  30.77 
 
 
163 aa  43.1  0.003  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_0638  cold-shock DNA-binding domain-containing protein  38.03 
 
 
87 aa  43.1  0.003  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.557859  normal 
 
 
-
 
NC_013159  Svir_34450  cold-shock DNA-binding protein family  35.48 
 
 
68 aa  42  0.005  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_11700  Cold shock domain family protein  36.51 
 
 
70 aa  42  0.005  Azotobacter vinelandii DJ  Bacteria  normal  0.0476912  n/a   
 
 
-
 
NC_007005  Psyr_3884  cold-shock protein, DNA-binding  34.92 
 
 
69 aa  41.6  0.007  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.218294  normal  0.489383 
 
 
-
 
NC_012854  Rleg_6292  cold-shock DNA-binding domain protein  33.33 
 
 
67 aa  41.6  0.007  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.392497  normal 
 
 
-
 
NC_004578  PSPTO_4145  cold shock protein CapB  34.92 
 
 
69 aa  41.6  0.007  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_1201  cold-shock DNA-binding protein family protein  34.92 
 
 
69 aa  41.6  0.007  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.227908 
 
 
-
 
NC_008609  Ppro_3308  cold-shock DNA-binding domain-containing protein  33.85 
 
 
66 aa  41.6  0.007  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.0000000515158  n/a   
 
 
-
 
NC_010001  Cphy_0644  cold-shock DNA-binding domain-containing protein  31.25 
 
 
66 aa  41.2  0.008  Clostridium phytofermentans ISDg  Bacteria  unclonable  0.0000000000253244  n/a   
 
 
-
 
NC_007498  Pcar_0201  cold shock protein  35.71 
 
 
66 aa  41.6  0.008  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.0000000000000435671  n/a   
 
 
-
 
NC_012918  GM21_0191  cold-shock DNA-binding domain protein  38.3 
 
 
66 aa  41.2  0.008  Geobacter sp. M21  Bacteria  n/a    unclonable  8.97537e-36 
 
 
-
 
NC_003296  RSp1053  cold shock-like transcription regulator protein  41.67 
 
 
67 aa  41.2  0.008  Ralstonia solanacearum GMI1000  Bacteria  normal  0.470883  normal 
 
 
-
 
NC_012848  Rleg_5163  cold-shock DNA-binding domain protein  36.54 
 
 
67 aa  41.2  0.009  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.160929  normal  0.551155 
 
 
-
 
NC_008609  Ppro_0557  cold-shock DNA-binding domain-containing protein  32.81 
 
 
67 aa  41.2  0.009  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0146749  n/a   
 
 
-
 
NC_010322  PputGB1_0990  cold-shock DNA-binding domain-containing protein  33.33 
 
 
70 aa  40.8  0.01  Pseudomonas putida GB-1  Bacteria  normal  0.0731178  normal 
 
 
-
 
NC_010501  PputW619_4233  cold-shock DNA-binding domain-containing protein  33.33 
 
 
70 aa  41.2  0.01  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_0754  cold-shock DNA-binding domain protein  37.5 
 
 
66 aa  41.2  0.01  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_1862  cold-shock DNA-binding domain-containing protein  36.07 
 
 
69 aa  41.2  0.01  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.861564  n/a   
 
 
-
 
NC_004578  PSPTO_1274  cold shock domain family protein  32.84 
 
 
70 aa  41.2  0.01  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
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