Gene Rxyl_1247 details

Gene Information

• Locus tag: Rxyl_1247
• ID: 4116249
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rubrobacter xylanophilus DSM 9941
• Kingdom: Bacteria
• Replicon accession: NC_008148
• Strand: +
• Start bp: 1270534
• End bp: 1271127
• Gene Length: 594 bp
• Protein Length: 197 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 638036035
• Product: cold-shock DNA-binding protein family protein
• Protein accession: YP_644023
• Protein GI: 108804086
• COG category: [K] Transcription
• COG ID: [COG1278] Cold shock proteins

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.0572513
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAGATT CCAAAAAGCG CATAGCACTA AAGCCGCATA TAGACCAGAT CCGGGAGTGG 
GTGGACCAGG GCAAGAGCGA CGAGTGGATC GCCGACGCCC TGGGCACCAG CGCCTCCTCC 
GTGCAGTCGT TCCGCTCCCG CAACGACATC TACCGCCGGG AGAGGGTGCA GCGCGAGCCC 
GAGAGCATCT TCGAGGGCGT GCTGGACCAC GGCGAGCGCG ACGGGTGGGG CCTGTGGCTC 
GACCCTTCGG TGGCCGAGGA CCCCATCTGG AAGCGCCACT GGCAGGATGT GGACGCCGTG 
GTGGTGAAGC TGGCGCGCGA GGCCATAGTC CTGGAGCCCG ACCGCGCCGA GCAGGAGGGC 
GGGGAGAAGC CCGCCCGGCA GGCCCGGCCC TCCCAGCGGG AGCAGGGCCG CGTGAAGTGG 
TTCGACCCCG AGAAGGGGTA CGGCTTTCTC GTCCGGCCCG GCGGTGAGGA CCTCTTCGTA 
CATCACTCTG AGGTGGAGGG TGATGCCTCC TCCCTCGGGC AGGGGGTCGA GGTGGAGTAC 
GAGGTCGGGC GCAACGAGCG CGGCCCGAAC GCCCGGCGGG TGAGGGTGCT CTAG 

 

Protein sequence

MADSKKRIAL KPHIDQIREW VDQGKSDEWI ADALGTSASS VQSFRSRNDI YRRERVQREP 
ESIFEGVLDH GERDGWGLWL DPSVAEDPIW KRHWQDVDAV VVKLAREAIV LEPDRAEQEG 
GEKPARQARP SQREQGRVKW FDPEKGYGFL VRPGGEDLFV HHSEVEGDAS SLGQGVEVEY 
EVGRNERGPN ARRVRVL