14 homologs were found in PanDaTox collection
for query gene Ping_3106 on replicon NC_008709
Organism: Psychromonas ingrahamii 37



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008709  Ping_3106  transposon Tn7 transposition protein D  100 
 
 
300 aa  625  1e-178  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.0387567 
 
 
-
 
NC_007413  Ava_3489  Tn7-like transposition protein D  27.61 
 
 
316 aa  52.8  0.000006  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0155842  normal  0.0624831 
 
 
-
 
NC_009012  Cthe_1114  Tn7-like transposition protein D  26.58 
 
 
628 aa  52.8  0.000006  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_0248  Tn7-like transposition protein D  27.78 
 
 
630 aa  51.6  0.00002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.194632 
 
 
-
 
NC_011726  PCC8801_3950  Tn7-like transposition protein D  42.5 
 
 
280 aa  46.2  0.0006  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_002947  PP_5407  transposition protein, TnsD-related protein  39.39 
 
 
532 aa  45.1  0.001  Pseudomonas putida KT2440  Bacteria  normal  hitchhiker  0.00865323 
 
 
-
 
NC_007413  Ava_3495  Tn7-like transposition protein D  24.53 
 
 
636 aa  45.4  0.001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.178202  normal  0.0885981 
 
 
-
 
NC_010512  Bcenmc03_6940  hypothetical protein  24.38 
 
 
591 aa  45.8  0.001  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.100995  normal 
 
 
-
 
NC_007492  Pfl01_5722  hypothetical protein  42.11 
 
 
569 aa  44.7  0.002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.606604 
 
 
-
 
NC_009972  Haur_3956  hypothetical protein  38.64 
 
 
301 aa  44.7  0.002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1871  Tn7-like transposition protein D  40 
 
 
625 aa  43.5  0.004  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_2922  hypothetical protein  27.01 
 
 
515 aa  43.5  0.005  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_2324  Tn7-like transposition protein D  35 
 
 
295 aa  43.5  0.005  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  7.61974e-16 
 
 
-
 
NC_003909  BCE_0178  Tn7-like transposition protein D  30.43 
 
 
610 aa  42.7  0.007  Bacillus cereus ATCC 10987  Bacteria  normal  0.909766  n/a   
 
 
-
 
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