41 homologs were found in PanDaTox collection
for query gene Gura_0485 on replicon NC_009483
Organism: Geobacter uraniireducens Rf4



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009483  Gura_0485  2-hydroxyglutaryl-CoA dehydratase, D-component  100 
 
 		 333 aa  684    Geobacter uraniireducens Rf4  Bacteria  normal  1  n/a   
 
 
-
 
NC_002939  GSU2925  hypothetical protein  73.46 
 
 		 324 aa  516  1.0000000000000001e-145  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_007517  Gmet_0545  hypothetical protein  71.91 
 
 		 325 aa  515  1.0000000000000001e-145  Geobacter metallireducens GS-15  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012918  GM21_0387  2-hydroxyglutaryl-CoA dehydratase D-component  71.17 
 
 		 327 aa  502  1e-141  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
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NC_011146  Gbem_0393  2-hydroxyglutaryl-CoA dehydratase D-component  70.55 
 
 		 327 aa  486  1e-136  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_007498  Pcar_2726  benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit  63.08 
 
 		 327 aa  437  1e-121  Pelobacter carbinolicus DSM 2380  Bacteria  normal  1  n/a   
 
 
-
 
NC_010424  Daud_1507  2-hydroxyglutaryl-CoA dehydratase, D-component  59.01 
 
 		 326 aa  411  1e-114  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  1  n/a   
 
 
-
 
NC_013216  Dtox_3625  2-hydroxyglutaryl-CoA dehydratase D-component  57.1 
 
 		 325 aa  412  1e-114  Desulfotomaculum acetoxidans DSM 771  Bacteria  unclonable  0.00000000225912  normal  0.25533 
 
 
-
 
NC_009253  Dred_2688  2-hydroxyglutaryl-CoA dehydratase, D-component  56.48 
 
 		 325 aa  409  1e-113  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.00668427  n/a   
 
 
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NC_013385  Adeg_0480  2-hydroxyglutaryl-CoA dehydratase D-component  59.75 
 
 		 326 aa  398  9.999999999999999e-111  Ammonifex degensii KC4  Bacteria  normal  0.389098  n/a   
 
 
-
 
NC_008346  Swol_0450  hypothetical protein  54.18 
 
 		 325 aa  396  1e-109  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  1  n/a   
 
 
-
 
NC_011830  Dhaf_4399  2-hydroxyglutaryl-CoA dehydratase D-component  54.65 
 
 		 335 aa  386  1e-106  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.000000214001  n/a   
 
 
-
 
NC_009012  Cthe_3103  2-hydroxyglutaryl-CoA dehydratase, D-component  51.83 
 
 		 328 aa  358  6e-98  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_009455  DehaBAV1_0566  2-hydroxyglutaryl-CoA dehydratase, D-component  48.47 
 
 		 339 aa  327  2.0000000000000001e-88  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00128016  n/a   
 
 
-
 
NC_013552  DhcVS_532  hypothetical protein  47.38 
 
 		 336 aa  317  2e-85  Dehalococcoides sp. VS  Bacteria  hitchhiker  0.00368182  n/a   
 
 
-
 
NC_002936  DET0591  hypothetical protein  46.93 
 
 		 339 aa  316  3e-85  Dehalococcoides ethenogenes 195  Bacteria  normal  0.114388  n/a   
 
 
-
 
NC_009634  Mevan_1356  2-hydroxyglutaryl-CoA dehydratase D-component  26.35 
 
 		 373 aa  62  0.00000001  Methanococcus vannielii SB  Archaea  normal  0.0888918  n/a   
 
 
-
 
NC_009635  Maeo_1346  2-hydroxyglutaryl-CoA dehydratase D-component  22.99 
 
 		 372 aa  57.4  0.0000003  Methanococcus aeolicus Nankai-3  Archaea  normal  0.120946  n/a   
 
 
-
 
NC_011146  Gbem_2040  2-hydroxyglutaryl-CoA dehydratase D-component  25.82 
 
 		 401 aa  56.6  0.0000006  Geobacter bemidjiensis Bem  Bacteria  normal  0.921137  n/a   
 
 
-
 
NC_013385  Adeg_0387  2-hydroxyglutaryl-CoA dehydratase D-component  25.07 
 
 		 426 aa  53.5  0.000005  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_009634  Mevan_1623  2-hydroxyglutaryl-CoA dehydratase D-component  23.31 
 
 		 373 aa  53.5  0.000005  Methanococcus vannielii SB  Archaea  decreased coverage  0.000208392  n/a   
 
 
-
 
NC_007519  Dde_0090  2-hydroxyglutaryl-CoA dehydratase, beta subunit-like  25.88 
 
 		 426 aa  53.1  0.000006  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  1  n/a   
 
 
-
 
NC_009637  MmarC7_0081  2-hydroxyglutaryl-CoA dehydratase D-component  23.05 
 
 		 373 aa  50.8  0.00003  Methanococcus maripaludis C7  Archaea  hitchhiker  0.00790728  hitchhiker  0.00027984 
 
 
-
 
NC_009637  MmarC7_1346  2-hydroxyglutaryl-CoA dehydratase D-component  23.21 
 
 		 373 aa  50.4  0.00004  Methanococcus maripaludis C7  Archaea  normal  0.922776  normal  0.0249494 
 
 
-
 
NC_013512  Sdel_2024  2-hydroxyglutaryl-CoA dehydratase D-component  24.6 
 
 		 439 aa  49.7  0.00006  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  1  n/a   
 
 
-
 
NC_009135  MmarC5_0834  2-hydroxyglutaryl-CoA dehydratase, D-component  23.63 
 
 		 373 aa  49.7  0.00007  Methanococcus maripaludis C5  Archaea  normal  1  n/a   
 
 
-
 
NC_009975  MmarC6_1821  2-hydroxyglutaryl-CoA dehydratase D-component  23.92 
 
 		 373 aa  49.7  0.00008  Methanococcus maripaludis C6  Archaea  normal  1  n/a   
 
 
-
 
NC_009135  MmarC5_1329  2-hydroxyglutaryl-CoA dehydratase, D-component  23.71 
 
 		 373 aa  47.8  0.0002  Methanococcus maripaludis C5  Archaea  normal  0.360165  n/a   
 
 
-
 
NC_009975  MmarC6_0607  2-hydroxyglutaryl-CoA dehydratase D-component  23.3 
 
 		 373 aa  47  0.0004  Methanococcus maripaludis C6  Archaea  normal  0.422107  n/a   
 
 
-
 
NC_007644  Moth_1006  2-hydroxyglutaryl-CoA dehydratase, D-component  27.89 
 
 		 421 aa  47.4  0.0004  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0695891  hitchhiker  0.000177823 
 
 
-
 
NC_011661  Dtur_1747  2-hydroxyglutaryl-CoA dehydratase D-component  21.43 
 
 		 339 aa  46.6  0.0005  Dictyoglomus turgidum DSM 6724  Bacteria  normal  1  n/a   
 
 
-
 
NC_008346  Swol_0412  (R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit, putative  25.41 
 
 		 424 aa  46.2  0.0008  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  1  n/a   
 
 
-
 
NC_014150  Bmur_0617  2-hydroxyglutaryl-CoA dehydratase D-component  26.2 
 
 		 384 aa  45.8  0.001  Brachyspira murdochii DSM 12563  Bacteria  normal  1  n/a   
 
 
-
 
NC_013216  Dtox_1465  2-hydroxyglutaryl-CoA dehydratase D-component  24.18 
 
 		 369 aa  44.7  0.002  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007644  Moth_1418  2-hydroxyglutaryl-CoA dehydratase, D-component  27.42 
 
 		 436 aa  44.7  0.002  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.00133287  normal  0.906732 
 
 
-
 
NC_010718  Nther_1771  2-hydroxyglutaryl-CoA dehydratase D-component  21.92 
 
 		 419 aa  45.1  0.002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  0.433973 
 
 
-
 
NC_002967  TDE0392  (R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit, putative  22.95 
 
 		 392 aa  44.3  0.003  Treponema denticola ATCC 35405  Bacteria  normal  1  n/a   
 
 
-
 
NC_009943  Dole_1685  2-hydroxyglutaryl-CoA dehydratase D-component  22.83 
 
 		 424 aa  43.5  0.005  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.00000455282  n/a   
 
 
-
 
NC_008751  Dvul_0706  2-hydroxyglutaryl-CoA dehydratase, D-component  23.27 
 
 		 380 aa  43.1  0.006  Desulfovibrio vulgaris DP4  Bacteria  normal  0.255737  normal  0.505258 
 
 
-
 
NC_009802  CCC13826_1134  UDP-MurNac-pentapeptide presynthetase  23.85 
 
 		 385 aa  43.1  0.007  Campylobacter concisus 13826  Bacteria  normal  0.207036  n/a   
 
 
-
 
NC_011832  Mpal_1147  2-hydroxyglutaryl-CoA dehydratase D-component  23.67 
 
 		 393 aa  42.7  0.01  Methanosphaerula palustris E1-9c  Archaea  normal  0.132933  normal  1 
 
 
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