56 homologs were found in PanDaTox collection
for query gene Avi_4136 on replicon NC_011989
Organism: Agrobacterium vitis S4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011989  Avi_4136  succinate dehydrogenase hydrophobic membrane anchor  100 
 
 
126 aa  254  3e-67  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3691  succinate dehydrogenase, hydrophobic membrane anchor protein  76.98 
 
 
126 aa  208  2e-53  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3979  succinate dehydrogenase, hydrophobic membrane anchor protein  76.98 
 
 
126 aa  206  8e-53  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.705456  normal  0.476216 
 
 
-
 
NC_009636  Smed_2958  succinate dehydrogenase hydrophobic membrane anchor  65.87 
 
 
126 aa  187  4e-47  Sinorhizobium medicae WSM419  Bacteria  normal  0.0363094  normal 
 
 
-
 
NC_009505  BOV_1831  succinate dehydrogenase, hydrophobic membrane anchor protein  63.2 
 
 
131 aa  165  2e-40  Brucella ovis ATCC 25840  Bacteria  normal  0.405977  n/a   
 
 
-
 
NC_004310  BR1903  succinate dehydrogenase, hydrophobic membrane anchor protein, putative  63.2 
 
 
131 aa  163  5.9999999999999996e-40  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_3245  succinate dehydrogenase subunit D  57.6 
 
 
127 aa  160  4.0000000000000004e-39  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0952  succinate dehydrogenase hydrophobic membrane anchor  60.8 
 
 
131 aa  159  9e-39  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.676521  n/a   
 
 
-
 
NC_008783  BARBAKC583_0089  succinate dehydrogenase, hydrophobic membrane anchor protein  50 
 
 
128 aa  129  1.0000000000000001e-29  Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1966  succinate dehydrogenase hydrophobic membrane anchor  49.19 
 
 
135 aa  122  1e-27  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.192092 
 
 
-
 
NC_010725  Mpop_4277  succinate dehydrogenase, hydrophobic membrane anchor protein  43.65 
 
 
139 aa  122  2e-27  Methylobacterium populi BJ001  Bacteria  normal  0.692368  normal  0.965438 
 
 
-
 
NC_010172  Mext_3601  succinate dehydrogenase, hydrophobic membrane anchor protein  44.44 
 
 
139 aa  122  2e-27  Methylobacterium extorquens PA1  Bacteria  normal  0.0736554  normal 
 
 
-
 
NC_011757  Mchl_3893  succinate dehydrogenase, hydrophobic membrane anchor protein  44.44 
 
 
139 aa  121  3e-27  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.20647  normal 
 
 
-
 
NC_010511  M446_6039  succinate dehydrogenase, hydrophobic membrane anchor protein  41.8 
 
 
137 aa  111  3e-24  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0685536 
 
 
-
 
NC_011894  Mnod_7245  succinate dehydrogenase, hydrophobic membrane anchor protein  40.16 
 
 
137 aa  111  4.0000000000000004e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.396127  n/a   
 
 
-
 
NC_007964  Nham_3617  succinate dehydrogenase, cytochrome b subunit  45.08 
 
 
133 aa  108  3e-23  Nitrobacter hamburgensis X14  Bacteria  normal  0.0610127  n/a   
 
 
-
 
NC_008340  Mlg_1333  succinate dehydrogenase subunit D  39.52 
 
 
126 aa  106  9.000000000000001e-23  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.934114 
 
 
-
 
NC_007778  RPB_0326  succinate dehydrogenase, cytochrome b subunit  43.8 
 
 
140 aa  104  4e-22  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_2799  succinate dehydrogenase, cytochrome b subunit  43.44 
 
 
135 aa  104  4e-22  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_2750  succinate dehydrogenase, hydrophobic membrane anchor protein  41.94 
 
 
130 aa  103  6e-22  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0217  succinate dehydrogenase, hydrophobic membrane anchor protein  42.62 
 
 
137 aa  103  7e-22  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.294581  n/a   
 
 
-
 
NC_009719  Plav_1434  succinate dehydrogenase hydrophobic membrane anchor  47.15 
 
 
141 aa  102  1e-21  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_0071  succinate dehydrogenase, cytochrome b subunit  39.34 
 
 
140 aa  100  7e-21  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0480  succinate dehydrogenase, cytochrome b subunit  42.62 
 
 
140 aa  100  8e-21  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.74591 
 
 
-
 
NC_009485  BBta_0229  succinate dehydrogenase subunit D  41.32 
 
 
124 aa  96.7  9e-20  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0481798  normal 
 
 
-
 
NC_009511  Swit_1311  succinate dehydrogenase subunit D  38.89 
 
 
129 aa  96.3  1e-19  Sphingomonas wittichii RW1  Bacteria  normal  0.0693068  normal 
 
 
-
 
NC_010717  PXO_00603  succinate dehydrogenase, hydrophobic membrane anchor protein  40.83 
 
 
128 aa  92  2e-18  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_2847  succinate dehydrogenase subunit D  42.06 
 
 
123 aa  89.4  2e-17  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_3031  succinate dehydrogenase, cytochrome b subunit  39.02 
 
 
134 aa  89.4  2e-17  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1203  succinate dehydrogenase subunit D  38.28 
 
 
128 aa  88.2  4e-17  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.767553  n/a   
 
 
-
 
NC_010513  Xfasm12_0379  succinate dehydrogenase hydrophobic membrane anchor subunit  40.83 
 
 
127 aa  86.7  9e-17  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_010577  XfasM23_0343  succinate dehydrogenase, hydrophobic membrane anchor protein  40.83 
 
 
127 aa  85.9  2e-16  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_2108  succinate dehydrogenase, hydrophobic membrane anchor protein  37.9 
 
 
140 aa  84.3  5e-16  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_1536  succinate dehydrogenase, hydrophobic membrane anchor protein  40.98 
 
 
128 aa  84.3  6e-16  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_0458  succinate dehydrogenase, hydrophobic membrane anchor protein  41.94 
 
 
139 aa  82.4  0.000000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.152846  normal 
 
 
-
 
NC_002977  MCA1549  succinate dehydrogenase, hydrophobic membrane anchor protein, putative  35.48 
 
 
126 aa  82  0.000000000000002  Methylococcus capsulatus str. Bath  Bacteria  normal  0.591464  n/a   
 
 
-
 
NC_011666  Msil_3564  succinate dehydrogenase, hydrophobic membrane anchor protein  37.82 
 
 
129 aa  77  0.00000000000008  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007794  Saro_1745  succinate dehydrogenase subunit D  30.16 
 
 
127 aa  75.1  0.0000000000003  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.287201  n/a   
 
 
-
 
NC_008789  Hhal_0045  succinate dehydrogenase, cytochrome b subunit  38.3 
 
 
127 aa  75.1  0.0000000000003  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_012853  Rleg_5819  succinate dehydrogenase, hydrophobic membrane anchor protein  35.25 
 
 
127 aa  72.8  0.000000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_4839  succinate dehydrogenase, hydrophobic membrane anchor protein  34.96 
 
 
135 aa  72  0.000000000003  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_1880  succinate dehydrogenase, cytochrome b subunit  34.43 
 
 
125 aa  69.3  0.00000000002  Acidiphilium cryptum JF-5  Bacteria  normal  0.519683  n/a   
 
 
-
 
NC_007802  Jann_0810  succinate dehydrogenase subunit D  32.76 
 
 
123 aa  67.8  0.00000000005  Jannaschia sp. CCS1  Bacteria  normal  normal  0.851404 
 
 
-
 
NC_012853  Rleg_5889  succinate dehydrogenase, hydrophobic membrane anchor protein  37.1 
 
 
127 aa  67.4  0.00000000006  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_3020  succinate dehydrogenase, cytochrome b subunit  34.17 
 
 
127 aa  66.6  0.0000000001  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.915417 
 
 
-
 
NC_009952  Dshi_2866  hypothetical protein  31.2 
 
 
123 aa  63.2  0.000000001  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_0568  putative succinate dehydrogenase, hydrophobic membrane anchor protein  28.69 
 
 
129 aa  53.1  0.000001  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.0825505 
 
 
-
 
NC_007493  RSP_0975  succinate dehydrogenase subunit D  27.73 
 
 
123 aa  47.8  0.00005  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2635  putative succinate dehydrogenase, hydrophobic membrane anchor protein  27.73 
 
 
123 aa  47.8  0.00005  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_0087  hypothetical protein  27.73 
 
 
123 aa  47.8  0.00006  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.5065  normal 
 
 
-
 
NC_010117  COXBURSA331_A1562  succinate dehydrogenase, hydrophobic membrane anchor protein  28.09 
 
 
113 aa  47  0.0001  Coxiella burnetii RSA 331  Bacteria  normal  0.725991  n/a   
 
 
-
 
NC_009727  CBUD_0591  succinate dehydrogenase membrane anchor subunit  28.09 
 
 
115 aa  46.6  0.0001  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  0.141224  n/a   
 
 
-
 
NC_008043  TM1040_3526  succinate dehydrogenase subunit D  29.91 
 
 
123 aa  45.8  0.0002  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A2324  succinate dehydrogenase subunit D  29.13 
 
 
121 aa  42.7  0.002  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_2363  succinate dehydrogenase, hydrophobic membrane anchor protein  31.11 
 
 
116 aa  41.6  0.004  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_2472  succinate dehydrogenase, hydrophobic membrane anchor protein  28.77 
 
 
105 aa  40.4  0.009  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
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