More than 300 homologs were found in PanDaTox collection
for query gene Pecwa_1027 on replicon NC_013421
Organism: Pectobacterium wasabiae WPP163



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012917  PC1_0793  transcriptional regulator, AraC family  86.52 
 
 
376 aa  643    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0138198  n/a   
 
 
-
 
NC_013421  Pecwa_1027  transcriptional regulator, AraC family  100 
 
 
359 aa  746    Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_4134  AraC family transcriptional regulator  60.59 
 
 
354 aa  428  1e-119  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.0607807  n/a   
 
 
-
 
NC_009708  YpsIP31758_0082  ada regulatory protein  60.29 
 
 
354 aa  423  1e-117  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_2856  transcriptional regulator, AraC family  58.21 
 
 
361 aa  421  1e-116  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0739  methylated-DNA--protein-cysteine methyltransferase  57.64 
 
 
350 aa  412  1e-114  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1042  AraC family transcriptional regulator  61.05 
 
 
370 aa  413  1e-114  Methylobacterium sp. 4-46  Bacteria  normal  0.826547  normal 
 
 
-
 
NC_008687  Pden_4239  methylated-DNA--protein-cysteine methyltransferase  58 
 
 
353 aa  411  1e-114  Paracoccus denitrificans PD1222  Bacteria  normal  0.577797  normal  0.120321 
 
 
-
 
NC_002947  PP_0706  adaptive response regulator protein  57.1 
 
 
350 aa  409  1e-113  Pseudomonas putida KT2440  Bacteria  normal  0.998073  normal 
 
 
-
 
NC_007492  Pfl01_2938  AraC family transcriptional regulator  59.12 
 
 
357 aa  409  1e-113  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A4931  AraC family transcriptional regulator  55.84 
 
 
354 aa  411  1e-113  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_2450  transcriptional regulator, AraC family  57.59 
 
 
361 aa  409  1e-113  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc2570  bifunctional methylated-DNA--protein-cysteine methyltransferase/O-6-methylguanine-DNA transcription regulator  58.19 
 
 
360 aa  404  1e-111  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_37190  O6-methylguanine-DNA methyltransferase  59.54 
 
 
358 aa  404  1e-111  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0320795  normal 
 
 
-
 
NC_009656  PSPA7_3190  O6-methylguanine-DNA methyltransferase  58.65 
 
 
358 aa  402  1e-111  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_0740  AraC family transcriptional regulator  56.48 
 
 
350 aa  399  9.999999999999999e-111  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0476  methylated-DNA--protein-cysteine methyltransferase  55.62 
 
 
361 aa  395  1e-109  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_0501  transcriptional regulator, AraC family  58.56 
 
 
374 aa  390  1e-107  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.399439  n/a   
 
 
-
 
NC_010501  PputW619_4477  AraC family transcriptional regulator  58.79 
 
 
350 aa  389  1e-107  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_1536  transcriptional regulator, AraC family  54.42 
 
 
366 aa  389  1e-107  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.26366 
 
 
-
 
NC_007974  Rmet_3765  bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase  54.7 
 
 
354 aa  391  1e-107  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_2362  regulatory protein Ada  52.92 
 
 
354 aa  385  1e-106  Escherichia coli SMS-3-5  Bacteria  normal  0.960218  normal 
 
 
-
 
NC_011353  ECH74115_3351  regulatory protein Ada  52.92 
 
 
354 aa  385  1e-106  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.212963  normal 
 
 
-
 
NC_010658  SbBS512_E0727  regulatory protein Ada  52.92 
 
 
354 aa  386  1e-106  Shigella boydii CDC 3083-94  Bacteria  normal  0.166972  n/a   
 
 
-
 
CP001637  EcDH1_1445  transcriptional regulator, AraC family  52.37 
 
 
354 aa  382  1e-105  Escherichia coli DH1  Bacteria  normal  0.29559  n/a   
 
 
-
 
NC_004310  BR0368  ada regulatory protein  53.89 
 
 
361 aa  382  1e-105  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3595  Ada regulatory protein  53.49 
 
 
368 aa  384  1e-105  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_2512  regulatory protein Ada  52.37 
 
 
354 aa  381  1e-105  Escherichia coli E24377A  Bacteria  normal  0.0107303  n/a   
 
 
-
 
NC_010581  Bind_2118  AraC family transcriptional regulator  55.33 
 
 
366 aa  382  1e-105  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.0669009  normal 
 
 
-
 
NC_009505  BOV_0383  ada regulatory protein  54.18 
 
 
361 aa  384  1e-105  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02140  fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase  52.09 
 
 
354 aa  379  1e-104  Escherichia coli BL21(DE3)  Bacteria  normal  0.581837  n/a   
 
 
-
 
NC_012892  B21_02099  hypothetical protein  52.09 
 
 
354 aa  379  1e-104  Escherichia coli BL21  Bacteria  normal  0.592554  n/a   
 
 
-
 
NC_007005  Psyr_3365  methylated-DNA-[protein]-cysteine S-methyltransferase  53.82 
 
 
384 aa  380  1e-104  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010468  EcolC_1437  AraC family transcriptional regulator  52.09 
 
 
354 aa  380  1e-104  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.195699 
 
 
-
 
NC_010725  Mpop_4835  transcriptional regulator, AraC family  53.74 
 
 
360 aa  379  1e-104  Methylobacterium populi BJ001  Bacteria  normal  0.0179003  normal  0.379038 
 
 
-
 
NC_009800  EcHS_A2352  regulatory protein Ada  52.37 
 
 
354 aa  381  1e-104  Escherichia coli HS  Bacteria  normal  0.970088  n/a   
 
 
-
 
NC_008825  Mpe_A3753  transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase  59.94 
 
 
363 aa  377  1e-103  Methylibium petroleiphilum PM1  Bacteria  normal  0.2777  normal  0.322377 
 
 
-
 
NC_010505  Mrad2831_3551  AraC family transcriptional regulator  59.38 
 
 
369 aa  366  1e-100  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0783013  normal  0.874169 
 
 
-
 
NC_012560  Avin_46280  Methylated-DNA--(protein)-cysteine S-methyltransferase  58.06 
 
 
355 aa  366  1e-100  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A2491  regulatory protein ada  51.25 
 
 
353 aa  357  1.9999999999999998e-97  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_2793  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  51.27 
 
 
354 aa  356  3.9999999999999996e-97  Enterobacter sp. 638  Bacteria  normal  0.986339  normal 
 
 
-
 
NC_011083  SeHA_C2505  regulatory protein ada  52.62 
 
 
352 aa  354  2e-96  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.899315  hitchhiker  0.000630655 
 
 
-
 
NC_011080  SNSL254_A2449  regulatory protein ada  52.62 
 
 
352 aa  354  2e-96  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.0458356 
 
 
-
 
NC_011149  SeAg_B2401  regulatory protein ada  52.62 
 
 
352 aa  353  2e-96  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.00982046  n/a   
 
 
-
 
NC_011666  Msil_1307  transcriptional regulator, AraC family  51.69 
 
 
357 aa  353  2.9999999999999997e-96  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_009511  Swit_1127  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  53.14 
 
 
351 aa  352  5e-96  Sphingomonas wittichii RW1  Bacteria  normal  0.836162  normal 
 
 
-
 
NC_011205  SeD_A2608  regulatory protein ada  52.03 
 
 
352 aa  352  5e-96  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.669578 
 
 
-
 
NC_010172  Mext_4318  methylated-DNA--protein-cysteine methyltransferase  52.99 
 
 
380 aa  336  2.9999999999999997e-91  Methylobacterium extorquens PA1  Bacteria  normal  0.155933  normal 
 
 
-
 
NC_007510  Bcep18194_A6508  bifunctional DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  48.55 
 
 
363 aa  333  2e-90  Burkholderia sp. 383  Bacteria  hitchhiker  0.000000013299  normal  0.0946299 
 
 
-
 
NC_011757  Mchl_4687  transcriptional regulator, AraC family  52.71 
 
 
361 aa  333  3e-90  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0085  ADA regulatory protein  49.42 
 
 
364 aa  331  1e-89  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.000000000911419  n/a   
 
 
-
 
NC_010084  Bmul_3145  AraC family transcriptional regulator  48.27 
 
 
365 aa  328  1.0000000000000001e-88  Burkholderia multivorans ATCC 17616  Bacteria  hitchhiker  0.0000000198948  unclonable  0.00000000000612342 
 
 
-
 
NC_010622  Bphy_3088  AraC family transcriptional regulator  46.7 
 
 
376 aa  328  1.0000000000000001e-88  Burkholderia phymatum STM815  Bacteria  hitchhiker  0.000000118536  hitchhiker  0.0000000000000798373 
 
 
-
 
NC_008390  Bamb_3205  AraC family transcriptional regulator  48.27 
 
 
380 aa  328  1.0000000000000001e-88  Burkholderia ambifaria AMMD  Bacteria  hitchhiker  0.000040374  n/a   
 
 
-
 
NC_010551  BamMC406_3089  AraC family transcriptional regulator  48.27 
 
 
363 aa  327  2.0000000000000001e-88  Burkholderia ambifaria MC40-6  Bacteria  hitchhiker  0.000000381417  hitchhiker  0.0021619 
 
 
-
 
NC_009074  BURPS668_0116  regulatory protein ada (regulatory protein of adaptative response)  47.58 
 
 
364 aa  325  9e-88  Burkholderia pseudomallei 668  Bacteria  hitchhiker  0.00000000327978  n/a   
 
 
-
 
NC_009080  BMA10247_2323  ADA regulatory protein  47.29 
 
 
364 aa  325  1e-87  Burkholderia mallei NCTC 10247  Bacteria  decreased coverage  0.00000161007  n/a   
 
 
-
 
NC_006348  BMA0115  ADA regulatory protein  47.29 
 
 
364 aa  325  1e-87  Burkholderia mallei ATCC 23344  Bacteria  hitchhiker  0.0000393468  n/a   
 
 
-
 
NC_007434  BURPS1710b_0322  O6-methylguanine-DNA methyltransferase  47.58 
 
 
364 aa  325  1e-87  Burkholderia pseudomallei 1710b  Bacteria  unclonable  0.00000000161378  n/a   
 
 
-
 
NC_009080  BMA10247_2300  regulatory protein ada (regulatory protein of adaptative response)  47.29 
 
 
364 aa  325  1e-87  Burkholderia mallei NCTC 10247  Bacteria  hitchhiker  0.000121844  n/a   
 
 
-
 
NC_008836  BMA10229_A2249  ADA regulatory protein  47.29 
 
 
364 aa  325  1e-87  Burkholderia mallei NCTC 10229  Bacteria  hitchhiker  0.000000255362  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2836  ADA regulatory protein  47.29 
 
 
364 aa  325  1e-87  Burkholderia mallei SAVP1  Bacteria  hitchhiker  0.00000000000994394  n/a   
 
 
-
 
NC_009076  BURPS1106A_0132  ADA regulatory protein  47.29 
 
 
364 aa  325  1e-87  Burkholderia pseudomallei 1106a  Bacteria  normal  0.0622499  n/a   
 
 
-
 
NC_008060  Bcen_2539  AraC family transcriptional regulator  47.98 
 
 
363 aa  322  4e-87  Burkholderia cenocepacia AU 1054  Bacteria  hitchhiker  0.0000057895  n/a   
 
 
-
 
NC_008542  Bcen2424_3152  AraC family transcriptional regulator  47.98 
 
 
363 aa  322  4e-87  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.00000475647  n/a   
 
 
-
 
NC_013440  Hoch_6249  methylated-DNA/protein- cysteinemethyltransferase  51.56 
 
 
388 aa  322  5e-87  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_3171  AraC family transcriptional regulator  47.69 
 
 
363 aa  319  3.9999999999999996e-86  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.0000000719173  decreased coverage  0.000000135353 
 
 
-
 
NC_010159  YpAngola_A0076  adaptative response regulatory protein Ada  56.93 
 
 
273 aa  314  1.9999999999999998e-84  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_0834  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  45.48 
 
 
340 aa  304  2.0000000000000002e-81  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A4482  AraC family transcriptional regulator  48.83 
 
 
401 aa  303  3.0000000000000004e-81  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.00000000221745  unclonable  0.0000015212 
 
 
-
 
NC_007794  Saro_2396  transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase  46.04 
 
 
343 aa  303  4.0000000000000003e-81  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_2772  transcriptional regulator, AraC family  51.8 
 
 
313 aa  300  2e-80  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.353019  normal 
 
 
-
 
NC_010681  Bphyt_3955  transcriptional regulator, AraC family  48.09 
 
 
391 aa  300  3e-80  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.0000156521  normal  0.830157 
 
 
-
 
NC_008048  Sala_2282  AraC family transcriptional regulator  47.21 
 
 
345 aa  290  2e-77  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_1283  transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase  39.3 
 
 
344 aa  281  2e-74  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_2162  AraC family transcriptional regulator  56.34 
 
 
306 aa  264  2e-69  Delftia acidovorans SPH-1  Bacteria  normal  0.235913  normal 
 
 
-
 
NC_007348  Reut_B4734  DNA-O6-methylguanine--protein-cysteine S-methyltransferase  64.2 
 
 
240 aa  244  9.999999999999999e-64  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_2104  methylated-DNA-(protein)-cysteine S-methyltransferase  55.88 
 
 
211 aa  211  2e-53  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_0991  methylated-DNA/protein- cysteinemethyltransferase  40.91 
 
 
295 aa  207  3e-52  Meiothermus silvanus DSM 9946  Bacteria  normal  0.275505  normal  0.265908 
 
 
-
 
NC_008740  Maqu_2956  methylated-DNA--protein-cysteine methyltransferase  40.71 
 
 
303 aa  205  1e-51  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1950  transcriptional regulator, AraC family  45.25 
 
 
338 aa  205  1e-51  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009727  CBUD_0849  ADA regulatory protein  31.18 
 
 
351 aa  177  3e-43  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0128  methylated-DNA--protein-cysteine methyltransferase  31.5 
 
 
361 aa  173  2.9999999999999996e-42  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A4925  DNA-O6-methylguanine--protein-cysteine S-methyltransferase  54.04 
 
 
186 aa  171  2e-41  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007575  Suden_1946  AraC family transcriptional regulator  31.25 
 
 
282 aa  171  2e-41  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.609227  n/a   
 
 
-
 
NC_008463  PA14_17760  putative methylated-DNA--protein-cysteine methyltransferase  32.19 
 
 
357 aa  171  2e-41  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A4920  DNA-O6-methylguanine--protein-cysteine S-methyltransferase  52.5 
 
 
197 aa  167  2e-40  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_1745  methylated-DNA--protein-cysteine methyltransferase  32.08 
 
 
351 aa  167  2.9999999999999998e-40  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.00607574  n/a   
 
 
-
 
NC_010338  Caul_4048  methylated-DNA--protein-cysteine methyltransferase  52.8 
 
 
241 aa  164  2.0000000000000002e-39  Caulobacter sp. K31  Bacteria  normal  0.785924  normal  0.44527 
 
 
-
 
NC_009656  PSPA7_1546  putative methylated-DNA--protein-cysteine methyltransferase  32.39 
 
 
357 aa  163  5.0000000000000005e-39  Pseudomonas aeruginosa PA7  Bacteria  normal  0.939179  n/a   
 
 
-
 
NC_009436  Ent638_0045  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  31.43 
 
 
348 aa  162  8.000000000000001e-39  Enterobacter sp. 638  Bacteria  normal  0.218349  normal 
 
 
-
 
NC_012880  Dd703_0019  methylated-DNA/protein-cysteine methyltransferase  31.5 
 
 
360 aa  161  1e-38  Dickeya dadantii Ech703  Bacteria  normal  0.21113  n/a   
 
 
-
 
NC_013517  Sterm_1108  methylated-DNA/protein-cysteine methyltransferase  29.03 
 
 
348 aa  159  9e-38  Sebaldella termitidis ATCC 33386  Bacteria  unclonable  0.000000000971871  n/a   
 
 
-
 
NC_007912  Sde_3879  transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase  35.13 
 
 
293 aa  157  2e-37  Saccharophagus degradans 2-40  Bacteria  normal  0.612619  normal  0.1278 
 
 
-
 
NC_009767  Rcas_1325  methylated-DNA--protein-cysteine methyltransferase  48.75 
 
 
175 aa  157  3e-37  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3288  methylated-DNA--protein-cysteine methyltransferase  30.62 
 
 
351 aa  156  5.0000000000000005e-37  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.575953  n/a   
 
 
-
 
NC_011369  Rleg2_0066  methylated-DNA/protein-cysteine methyltransferase  29.97 
 
 
357 aa  156  6e-37  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.202121  decreased coverage  0.00876972 
 
 
-
 
NC_013037  Dfer_0549  transcriptional regulator, AraC family  32.86 
 
 
289 aa  155  1e-36  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.587181 
 
 
-
 
NC_003295  RSc2566  putative methylated-DNA--protein-cysteine methyltransferase  51.55 
 
 
171 aa  153  5e-36  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_0073  methylated-DNA--protein-cysteine methyltransferase  30.99 
 
 
370 aa  153  5e-36  Sinorhizobium medicae WSM419  Bacteria  normal  0.332554  normal 
 
 
-
 
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