More than 300 homologs were found in PanDaTox collection
for query gene PputW619_4477 on replicon NC_010501
Organism: Pseudomonas putida W619



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010501  PputW619_4477  AraC family transcriptional regulator  100 
 
 
350 aa  713    Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0740  AraC family transcriptional regulator  80.29 
 
 
350 aa  564  1e-160  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0739  methylated-DNA--protein-cysteine methyltransferase  79.43 
 
 
350 aa  563  1.0000000000000001e-159  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0706  adaptive response regulator protein  79.14 
 
 
350 aa  558  1e-158  Pseudomonas putida KT2440  Bacteria  normal  0.998073  normal 
 
 
-
 
NC_007510  Bcep18194_A4931  AraC family transcriptional regulator  67.24 
 
 
354 aa  494  9.999999999999999e-139  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_3190  O6-methylguanine-DNA methyltransferase  71.47 
 
 
358 aa  486  1e-136  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_37190  O6-methylguanine-DNA methyltransferase  71.88 
 
 
358 aa  479  1e-134  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0320795  normal 
 
 
-
 
NC_007974  Rmet_3765  bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase  65.52 
 
 
354 aa  474  1e-133  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_2856  transcriptional regulator, AraC family  65.42 
 
 
361 aa  457  1e-127  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_2450  transcriptional regulator, AraC family  64.55 
 
 
361 aa  447  1.0000000000000001e-124  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc2570  bifunctional methylated-DNA--protein-cysteine methyltransferase/O-6-methylguanine-DNA transcription regulator  65.4 
 
 
360 aa  442  1e-123  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_4134  AraC family transcriptional regulator  62.54 
 
 
354 aa  443  1e-123  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.0607807  n/a   
 
 
-
 
NC_009505  BOV_0383  ada regulatory protein  60.85 
 
 
361 aa  442  1e-123  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR0368  ada regulatory protein  60.56 
 
 
361 aa  440  9.999999999999999e-123  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_2938  AraC family transcriptional regulator  63.08 
 
 
357 aa  440  9.999999999999999e-123  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0476  methylated-DNA--protein-cysteine methyltransferase  59.6 
 
 
361 aa  439  9.999999999999999e-123  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_0082  ada regulatory protein  62.43 
 
 
354 aa  437  1e-121  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_4239  methylated-DNA--protein-cysteine methyltransferase  63.71 
 
 
353 aa  427  1e-118  Paracoccus denitrificans PD1222  Bacteria  normal  0.577797  normal  0.120321 
 
 
-
 
NC_012917  PC1_0793  transcriptional regulator, AraC family  59.65 
 
 
376 aa  418  1e-116  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0138198  n/a   
 
 
-
 
NC_008825  Mpe_A3753  transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase  65.41 
 
 
363 aa  416  9.999999999999999e-116  Methylibium petroleiphilum PM1  Bacteria  normal  0.2777  normal  0.322377 
 
 
-
 
NC_013421  Pecwa_1027  transcriptional regulator, AraC family  58.79 
 
 
359 aa  415  9.999999999999999e-116  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_1536  transcriptional regulator, AraC family  61.32 
 
 
366 aa  410  1e-113  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.26366 
 
 
-
 
NC_010581  Bind_2118  AraC family transcriptional regulator  58.43 
 
 
366 aa  408  1e-113  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.0669009  normal 
 
 
-
 
NC_004578  PSPTO_3595  Ada regulatory protein  56.2 
 
 
368 aa  400  9.999999999999999e-111  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3365  methylated-DNA-[protein]-cysteine S-methyltransferase  56.36 
 
 
384 aa  401  9.999999999999999e-111  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_0501  transcriptional regulator, AraC family  61.61 
 
 
374 aa  395  1e-109  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.399439  n/a   
 
 
-
 
NC_010511  M446_1042  AraC family transcriptional regulator  59.36 
 
 
370 aa  377  1e-103  Methylobacterium sp. 4-46  Bacteria  normal  0.826547  normal 
 
 
-
 
CP001509  ECD_02140  fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase  53.64 
 
 
354 aa  372  1e-102  Escherichia coli BL21(DE3)  Bacteria  normal  0.581837  n/a   
 
 
-
 
NC_012892  B21_02099  hypothetical protein  53.64 
 
 
354 aa  372  1e-102  Escherichia coli BL21  Bacteria  normal  0.592554  n/a   
 
 
-
 
NC_010658  SbBS512_E0727  regulatory protein Ada  53.35 
 
 
354 aa  371  1e-102  Shigella boydii CDC 3083-94  Bacteria  normal  0.166972  n/a   
 
 
-
 
CP001637  EcDH1_1445  transcriptional regulator, AraC family  53.35 
 
 
354 aa  370  1e-101  Escherichia coli DH1  Bacteria  normal  0.29559  n/a   
 
 
-
 
NC_011353  ECH74115_3351  regulatory protein Ada  53.35 
 
 
354 aa  371  1e-101  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.212963  normal 
 
 
-
 
NC_009800  EcHS_A2352  regulatory protein Ada  53.06 
 
 
354 aa  368  1e-101  Escherichia coli HS  Bacteria  normal  0.970088  n/a   
 
 
-
 
NC_010468  EcolC_1437  AraC family transcriptional regulator  53.06 
 
 
354 aa  369  1e-101  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.195699 
 
 
-
 
NC_010498  EcSMS35_2362  regulatory protein Ada  53.06 
 
 
354 aa  369  1e-101  Escherichia coli SMS-3-5  Bacteria  normal  0.960218  normal 
 
 
-
 
NC_009801  EcE24377A_2512  regulatory protein Ada  53.06 
 
 
354 aa  368  1e-100  Escherichia coli E24377A  Bacteria  normal  0.0107303  n/a   
 
 
-
 
NC_010505  Mrad2831_3551  AraC family transcriptional regulator  61.04 
 
 
369 aa  364  1e-100  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0783013  normal  0.874169 
 
 
-
 
NC_010725  Mpop_4835  transcriptional regulator, AraC family  54.52 
 
 
360 aa  364  1e-99  Methylobacterium populi BJ001  Bacteria  normal  0.0179003  normal  0.379038 
 
 
-
 
NC_011666  Msil_1307  transcriptional regulator, AraC family  55.13 
 
 
357 aa  360  2e-98  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_012560  Avin_46280  Methylated-DNA--(protein)-cysteine S-methyltransferase  60.47 
 
 
355 aa  357  9.999999999999999e-98  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A2491  regulatory protein ada  52.48 
 
 
353 aa  356  3.9999999999999996e-97  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A2449  regulatory protein ada  52.48 
 
 
352 aa  355  8.999999999999999e-97  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.0458356 
 
 
-
 
NC_011149  SeAg_B2401  regulatory protein ada  52.48 
 
 
352 aa  355  8.999999999999999e-97  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.00982046  n/a   
 
 
-
 
NC_011083  SeHA_C2505  regulatory protein ada  52.48 
 
 
352 aa  355  8.999999999999999e-97  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.899315  hitchhiker  0.000630655 
 
 
-
 
NC_011205  SeD_A2608  regulatory protein ada  52.19 
 
 
352 aa  354  1e-96  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.669578 
 
 
-
 
NC_009511  Swit_1127  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  54.07 
 
 
351 aa  341  1e-92  Sphingomonas wittichii RW1  Bacteria  normal  0.836162  normal 
 
 
-
 
NC_013440  Hoch_6249  methylated-DNA/protein- cysteinemethyltransferase  55.62 
 
 
388 aa  340  2.9999999999999998e-92  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A6508  bifunctional DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  50.87 
 
 
363 aa  338  9.999999999999999e-92  Burkholderia sp. 383  Bacteria  hitchhiker  0.000000013299  normal  0.0946299 
 
 
-
 
NC_010159  YpAngola_A0076  adaptative response regulatory protein Ada  60.44 
 
 
273 aa  336  3.9999999999999995e-91  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_2793  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  51.01 
 
 
354 aa  333  3e-90  Enterobacter sp. 638  Bacteria  normal  0.986339  normal 
 
 
-
 
NC_010084  Bmul_3145  AraC family transcriptional regulator  50 
 
 
365 aa  329  4e-89  Burkholderia multivorans ATCC 17616  Bacteria  hitchhiker  0.0000000198948  unclonable  0.00000000000612342 
 
 
-
 
NC_010172  Mext_4318  methylated-DNA--protein-cysteine methyltransferase  55.06 
 
 
380 aa  326  4.0000000000000003e-88  Methylobacterium extorquens PA1  Bacteria  normal  0.155933  normal 
 
 
-
 
NC_007651  BTH_I0085  ADA regulatory protein  48.99 
 
 
364 aa  323  3e-87  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.000000000911419  n/a   
 
 
-
 
NC_011757  Mchl_4687  transcriptional regulator, AraC family  53.18 
 
 
361 aa  320  1.9999999999999998e-86  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2539  AraC family transcriptional regulator  50.29 
 
 
363 aa  320  1.9999999999999998e-86  Burkholderia cenocepacia AU 1054  Bacteria  hitchhiker  0.0000057895  n/a   
 
 
-
 
NC_008542  Bcen2424_3152  AraC family transcriptional regulator  50.29 
 
 
363 aa  320  1.9999999999999998e-86  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.00000475647  n/a   
 
 
-
 
NC_009074  BURPS668_0116  regulatory protein ada (regulatory protein of adaptative response)  48.55 
 
 
364 aa  320  3e-86  Burkholderia pseudomallei 668  Bacteria  hitchhiker  0.00000000327978  n/a   
 
 
-
 
NC_007434  BURPS1710b_0322  O6-methylguanine-DNA methyltransferase  48.55 
 
 
364 aa  319  3.9999999999999996e-86  Burkholderia pseudomallei 1710b  Bacteria  unclonable  0.00000000161378  n/a   
 
 
-
 
NC_008390  Bamb_3205  AraC family transcriptional regulator  49.42 
 
 
380 aa  319  3.9999999999999996e-86  Burkholderia ambifaria AMMD  Bacteria  hitchhiker  0.000040374  n/a   
 
 
-
 
NC_006348  BMA0115  ADA regulatory protein  48.27 
 
 
364 aa  319  5e-86  Burkholderia mallei ATCC 23344  Bacteria  hitchhiker  0.0000393468  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2836  ADA regulatory protein  48.27 
 
 
364 aa  319  5e-86  Burkholderia mallei SAVP1  Bacteria  hitchhiker  0.00000000000994394  n/a   
 
 
-
 
NC_009080  BMA10247_2300  regulatory protein ada (regulatory protein of adaptative response)  48.27 
 
 
364 aa  319  5e-86  Burkholderia mallei NCTC 10247  Bacteria  hitchhiker  0.000121844  n/a   
 
 
-
 
NC_009080  BMA10247_2323  ADA regulatory protein  48.27 
 
 
364 aa  319  5e-86  Burkholderia mallei NCTC 10247  Bacteria  decreased coverage  0.00000161007  n/a   
 
 
-
 
NC_008836  BMA10229_A2249  ADA regulatory protein  48.27 
 
 
364 aa  319  5e-86  Burkholderia mallei NCTC 10229  Bacteria  hitchhiker  0.000000255362  n/a   
 
 
-
 
NC_009076  BURPS1106A_0132  ADA regulatory protein  48.27 
 
 
364 aa  319  5e-86  Burkholderia pseudomallei 1106a  Bacteria  normal  0.0622499  n/a   
 
 
-
 
NC_010508  Bcenmc03_3171  AraC family transcriptional regulator  50 
 
 
363 aa  318  1e-85  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.0000000719173  decreased coverage  0.000000135353 
 
 
-
 
NC_010551  BamMC406_3089  AraC family transcriptional regulator  49.13 
 
 
363 aa  317  2e-85  Burkholderia ambifaria MC40-6  Bacteria  hitchhiker  0.000000381417  hitchhiker  0.0021619 
 
 
-
 
NC_011071  Smal_2772  transcriptional regulator, AraC family  59.77 
 
 
313 aa  315  5e-85  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.353019  normal 
 
 
-
 
NC_010622  Bphy_3088  AraC family transcriptional regulator  46.38 
 
 
376 aa  310  2e-83  Burkholderia phymatum STM815  Bacteria  hitchhiker  0.000000118536  hitchhiker  0.0000000000000798373 
 
 
-
 
NC_007794  Saro_2396  transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase  48.39 
 
 
343 aa  299  5e-80  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_0834  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  47.38 
 
 
340 aa  298  8e-80  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_2282  AraC family transcriptional regulator  47.67 
 
 
345 aa  291  1e-77  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_3955  transcriptional regulator, AraC family  48.99 
 
 
391 aa  291  1e-77  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.0000156521  normal  0.830157 
 
 
-
 
NC_007951  Bxe_A4482  AraC family transcriptional regulator  47.83 
 
 
401 aa  284  2.0000000000000002e-75  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.00000000221745  unclonable  0.0000015212 
 
 
-
 
NC_010002  Daci_2162  AraC family transcriptional regulator  59.57 
 
 
306 aa  283  3.0000000000000004e-75  Delftia acidovorans SPH-1  Bacteria  normal  0.235913  normal 
 
 
-
 
NC_007348  Reut_B4734  DNA-O6-methylguanine--protein-cysteine S-methyltransferase  75.69 
 
 
240 aa  281  1e-74  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_1283  transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase  42.9 
 
 
344 aa  275  7e-73  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_2956  methylated-DNA--protein-cysteine methyltransferase  45.09 
 
 
303 aa  223  3e-57  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_0991  methylated-DNA/protein- cysteinemethyltransferase  44.36 
 
 
295 aa  216  5.9999999999999996e-55  Meiothermus silvanus DSM 9946  Bacteria  normal  0.275505  normal  0.265908 
 
 
-
 
NC_007484  Noc_2104  methylated-DNA-(protein)-cysteine S-methyltransferase  64.38 
 
 
211 aa  213  3.9999999999999995e-54  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1950  transcriptional regulator, AraC family  47.41 
 
 
338 aa  210  2e-53  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009654  Mmwyl1_0128  methylated-DNA--protein-cysteine methyltransferase  34.02 
 
 
361 aa  186  4e-46  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_1108  methylated-DNA/protein-cysteine methyltransferase  32.16 
 
 
348 aa  181  2e-44  Sebaldella termitidis ATCC 33386  Bacteria  unclonable  0.000000000971871  n/a   
 
 
-
 
NC_009436  Ent638_0045  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  33.82 
 
 
348 aa  180  4e-44  Enterobacter sp. 638  Bacteria  normal  0.218349  normal 
 
 
-
 
NC_007492  Pfl01_2158  transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase  33.72 
 
 
360 aa  173  2.9999999999999996e-42  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.267601  normal  0.69653 
 
 
-
 
NC_008463  PA14_17760  putative methylated-DNA--protein-cysteine methyltransferase  35.16 
 
 
357 aa  169  6e-41  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A4920  DNA-O6-methylguanine--protein-cysteine S-methyltransferase  49.13 
 
 
197 aa  169  9e-41  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_2691  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  34.95 
 
 
297 aa  163  3e-39  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A4925  DNA-O6-methylguanine--protein-cysteine S-methyltransferase  52.57 
 
 
186 aa  163  5.0000000000000005e-39  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_1546  putative methylated-DNA--protein-cysteine methyltransferase  34.66 
 
 
357 aa  162  7e-39  Pseudomonas aeruginosa PA7  Bacteria  normal  0.939179  n/a   
 
 
-
 
NC_009727  CBUD_0849  ADA regulatory protein  30 
 
 
351 aa  162  8.000000000000001e-39  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_0549  transcriptional regulator, AraC family  36.61 
 
 
289 aa  160  3e-38  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.587181 
 
 
-
 
NC_003295  RSc2566  putative methylated-DNA--protein-cysteine methyltransferase  55.62 
 
 
171 aa  160  4e-38  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_0019  methylated-DNA/protein-cysteine methyltransferase  33.24 
 
 
360 aa  156  6e-37  Dickeya dadantii Ech703  Bacteria  normal  0.21113  n/a   
 
 
-
 
NC_013061  Phep_0721  methylated-DNA/protein-cysteine methyltransferase  31.8 
 
 
279 aa  156  6e-37  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_1493  methylated-DNA--protein-cysteine methyltransferase  35.02 
 
 
276 aa  155  9e-37  Shewanella denitrificans OS217  Bacteria  decreased coverage  0.0000000302117  n/a   
 
 
-
 
NC_013132  Cpin_2299  transcriptional regulator, AraC family  30 
 
 
284 aa  155  1e-36  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.015219  normal 
 
 
-
 
NC_004311  BRA0889  ada regulatory protein, putative  32.17 
 
 
350 aa  153  2.9999999999999998e-36  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0234  methylated-DNA/protein-cysteine methyltransferase  32.37 
 
 
354 aa  152  7e-36  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_1946  AraC family transcriptional regulator  30.8 
 
 
282 aa  152  8.999999999999999e-36  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.609227  n/a   
 
 
-
 
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