More than 300 homologs were found in PanDaTox collection
for query gene Cphy_0133 on replicon NC_010001
Organism: Clostridium phytofermentans ISDg



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010001  Cphy_0133  histone family protein DNA-binding protein  100 
 
 
91 aa  178  2.9999999999999997e-44  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0000000116647  n/a   
 
 
-
 
NC_010320  Teth514_0687  histone family protein DNA-binding protein  73.33 
 
 
91 aa  130  5e-30  Thermoanaerobacter sp. X514  Bacteria  normal  0.105584  n/a   
 
 
-
 
NC_012034  Athe_0648  histone family protein DNA-binding protein  65.93 
 
 
91 aa  123  1e-27  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.0000000000417185  n/a   
 
 
-
 
NC_009012  Cthe_2657  nucleoid protein Hbs  63.74 
 
 
91 aa  121  4e-27  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.000194133  n/a   
 
 
-
 
NC_011830  Dhaf_0135  histone family protein DNA-binding protein  67.03 
 
 
91 aa  120  7e-27  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00267128  n/a   
 
 
-
 
NC_009253  Dred_0115  histone family protein DNA-binding protein  64.04 
 
 
95 aa  116  9e-26  Desulfotomaculum reducens MI-1  Bacteria  normal  0.552761  n/a   
 
 
-
 
NC_011898  Ccel_3085  histone family protein DNA-binding protein  62.64 
 
 
91 aa  115  1.9999999999999998e-25  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.000115471  n/a   
 
 
-
 
NC_011898  Ccel_2424  histone family protein DNA-binding protein  65.56 
 
 
91 aa  115  1.9999999999999998e-25  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000000394497  n/a   
 
 
-
 
NC_007644  Moth_0085  nucleoid protein Hbs  59.34 
 
 
91 aa  114  3.9999999999999997e-25  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0539634  normal 
 
 
-
 
NC_010424  Daud_0075  histone family protein DNA-binding protein  60.44 
 
 
91 aa  114  5e-25  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_008527  LACR_0525  nucleoid protein Hbs  65.91 
 
 
91 aa  113  6.9999999999999995e-25  Lactococcus lactis subsp. cremoris SK11  Bacteria  decreased coverage  0.00046461  n/a   
 
 
-
 
NC_007498  Pcar_1686  DNA-binding protein HU-beta, NS1(HU-1)  63.33 
 
 
90 aa  112  1.0000000000000001e-24  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  6.460310000000001e-19  n/a   
 
 
-
 
NC_013385  Adeg_2069  histone family protein DNA-binding protein  61.11 
 
 
95 aa  112  1.0000000000000001e-24  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1275  histone family protein DNA-binding protein  61.11 
 
 
91 aa  113  1.0000000000000001e-24  Geobacter bemidjiensis Bem  Bacteria  decreased coverage  0.0000000292942  n/a   
 
 
-
 
NC_012918  GM21_3008  histone family protein DNA-binding protein  61.11 
 
 
91 aa  113  1.0000000000000001e-24  Geobacter sp. M21  Bacteria  n/a    normal  0.341575 
 
 
-
 
NC_008048  Sala_0799  histone-like DNA-binding protein  60 
 
 
90 aa  112  2.0000000000000002e-24  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.0173855 
 
 
-
 
NC_008261  CPF_2802  DNA-binding protein HU  62.22 
 
 
91 aa  112  2.0000000000000002e-24  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000000141643  n/a   
 
 
-
 
NC_008262  CPR_2488  DNA-binding protein HU  62.22 
 
 
91 aa  112  2.0000000000000002e-24  Clostridium perfringens SM101  Bacteria  unclonable  0.0000000000405619  n/a   
 
 
-
 
NC_007963  Csal_2043  histone-like DNA-binding protein  60 
 
 
90 aa  110  5e-24  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_011775  BCG9842_0074  DNA-binding protein HU  61.63 
 
 
90 aa  110  7.000000000000001e-24  Bacillus cereus G9842  Bacteria  unclonable  0.00000000000481156  n/a   
 
 
-
 
NC_009719  Plav_3229  histone family protein DNA-binding protein  57.78 
 
 
91 aa  109  1.0000000000000001e-23  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_0465  histone family protein DNA-binding protein  60.67 
 
 
90 aa  109  1.0000000000000001e-23  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  55.56 
 
 
90 aa  109  1.0000000000000001e-23  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal 
 
 
-
 
NC_008345  Sfri_3532  histone family protein DNA-binding protein  57.78 
 
 
90 aa  109  1.0000000000000001e-23  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008532  STER_1175  histone-like DNA-binding protein  62.5 
 
 
91 aa  109  1.0000000000000001e-23  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.000000211181  n/a   
 
 
-
 
NC_011658  BCAH187_A1673  DNA-binding protein HU  59.55 
 
 
90 aa  108  2.0000000000000002e-23  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000325838  n/a   
 
 
-
 
NC_012034  Athe_2511  histone family protein DNA-binding protein  58.43 
 
 
92 aa  108  2.0000000000000002e-23  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.0000000006954  n/a   
 
 
-
 
NC_003909  BCE_1637  DNA-binding protein HU  59.55 
 
 
90 aa  108  2.0000000000000002e-23  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.00420342  n/a   
 
 
-
 
NC_005945  BAS1420  DNA-binding protein HU  59.55 
 
 
90 aa  108  2.0000000000000002e-23  Bacillus anthracis str. Sterne  Bacteria  normal  0.190218  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1434  histone family protein DNA-binding protein  59.55 
 
 
90 aa  108  2.0000000000000002e-23  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.087278  n/a   
 
 
-
 
NC_005957  BT9727_1392  DNA-binding protein HU  59.55 
 
 
90 aa  108  2.0000000000000002e-23  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.011833  n/a   
 
 
-
 
NC_011725  BCB4264_A1566  DNA-binding protein HU  59.55 
 
 
90 aa  108  2.0000000000000002e-23  Bacillus cereus B4264  Bacteria  normal  0.236067  n/a   
 
 
-
 
NC_006274  BCZK1392  DNA-binding protein HU  59.55 
 
 
90 aa  108  2.0000000000000002e-23  Bacillus cereus E33L  Bacteria  decreased coverage  0.00000512711  n/a   
 
 
-
 
NC_009674  Bcer98_1233  histone family protein DNA-binding protein  59.55 
 
 
90 aa  108  2.0000000000000002e-23  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.0133564  n/a   
 
 
-
 
NC_007530  GBAA_1531  DNA-binding protein HU  59.55 
 
 
90 aa  108  2.0000000000000002e-23  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.259543  n/a   
 
 
-
 
NC_013171  Apre_0964  histone family protein DNA-binding protein  60.87 
 
 
92 aa  108  2.0000000000000002e-23  Anaerococcus prevotii DSM 20548  Bacteria  decreased coverage  0.00000000994236  n/a   
 
 
-
 
NC_007954  Sden_0658  histone-like DNA-binding protein  56.67 
 
 
90 aa  108  2.0000000000000002e-23  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_4353  histone family protein DNA-binding protein  57.78 
 
 
90 aa  109  2.0000000000000002e-23  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B3779  DNA-binding protein HU  59.55 
 
 
90 aa  108  2.0000000000000002e-23  Bacillus cereus G9842  Bacteria  decreased coverage  0.000354145  normal  0.961445 
 
 
-
 
NC_011773  BCAH820_1604  DNA-binding protein HU  59.55 
 
 
90 aa  108  2.0000000000000002e-23  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000159132 
 
 
-
 
NC_009831  Ssed_0600  histone family protein DNA-binding protein  58.89 
 
 
90 aa  108  2.0000000000000002e-23  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_4266  histone family protein DNA-binding protein  58.24 
 
 
93 aa  108  2.0000000000000002e-23  Variovorax paradoxus S110  Bacteria  normal  0.598481  n/a   
 
 
-
 
NC_003910  CPS_3781  HU family DNA-binding protein  60 
 
 
90 aa  108  3e-23  Colwellia psychrerythraea 34H  Bacteria  hitchhiker  0.0095051  n/a   
 
 
-
 
NC_010180  BcerKBAB4_5693  histone family protein DNA-binding protein  58.43 
 
 
90 aa  108  3e-23  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0471576  normal  0.0346696 
 
 
-
 
NC_002977  MCA0532  DNA-binding protein HU-beta  57.78 
 
 
90 aa  107  4.0000000000000004e-23  Methylococcus capsulatus str. Bath  Bacteria  decreased coverage  0.00043104  n/a   
 
 
-
 
NC_011777  BCAH820_B0184  DNA-binding protein HU 1  59.55 
 
 
90 aa  107  4.0000000000000004e-23  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_008577  Shewana3_2658  histone family protein DNA-binding protein  60 
 
 
90 aa  108  4.0000000000000004e-23  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000180426  normal  0.730265 
 
 
-
 
NC_011662  Tmz1t_0440  histone family protein DNA-binding protein  54.95 
 
 
91 aa  107  5e-23  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0430  histone family protein DNA-binding protein  57.78 
 
 
90 aa  107  5e-23  Shewanella loihica PV-4  Bacteria  normal  0.719598  normal 
 
 
-
 
NC_011655  BCAH187_C0183  DNA-binding protein HU 1  59.55 
 
 
90 aa  107  6e-23  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000296943  hitchhiker  2.26878e-36 
 
 
-
 
NC_008346  Swol_0083  DNA-binding protein HU (DNA-binding protein II)  60.67 
 
 
90 aa  107  7.000000000000001e-23  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_0070  nucleoid protein Hbs  56.32 
 
 
92 aa  107  7.000000000000001e-23  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.0240129  normal 
 
 
-
 
NC_009483  Gura_4407  histone family protein DNA-binding protein  59.55 
 
 
94 aa  107  8.000000000000001e-23  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000192025  n/a   
 
 
-
 
NC_003910  CPS_2063  HU family DNA-binding protein  56.67 
 
 
91 aa  106  9.000000000000001e-23  Colwellia psychrerythraea 34H  Bacteria  normal  0.832344  n/a   
 
 
-
 
NC_007514  Cag_0362  histone-like DNA-binding protein  61.11 
 
 
91 aa  106  9.000000000000001e-23  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_2154  histone family protein DNA-binding protein  58.43 
 
 
90 aa  105  1e-22  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000000552537  n/a   
 
 
-
 
NC_009665  Shew185_1596  histone family protein DNA-binding protein  58.89 
 
 
90 aa  106  1e-22  Shewanella baltica OS185  Bacteria  unclonable  0.00000000000169185  n/a   
 
 
-
 
NC_004347  SO_1797  HU family DNA-binding protein  58.89 
 
 
90 aa  106  1e-22  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_1630  histone family protein DNA-binding protein  58.89 
 
 
90 aa  106  1e-22  Shewanella baltica OS195  Bacteria  unclonable  0.0000000159632  normal 
 
 
-
 
NC_011663  Sbal223_2747  histone family protein DNA-binding protein  58.89 
 
 
90 aa  106  1e-22  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000000276504  normal  0.581764 
 
 
-
 
NC_009438  Sputcn32_1493  histone family protein DNA-binding protein  58.89 
 
 
90 aa  106  1e-22  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000000388309  n/a   
 
 
-
 
NC_011901  Tgr7_0942  histone family protein DNA-binding protein  56.67 
 
 
90 aa  105  1e-22  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_2492  histone family protein DNA-binding protein  58.89 
 
 
90 aa  106  1e-22  Shewanella sp. MR-4  Bacteria  unclonable  0.000000000348442  normal  0.0842071 
 
 
-
 
NC_008322  Shewmr7_2560  histone family protein DNA-binding protein  58.89 
 
 
90 aa  106  1e-22  Shewanella sp. MR-7  Bacteria  unclonable  0.000000135506  normal  0.0536414 
 
 
-
 
NC_009052  Sbal_1607  histone family protein DNA-binding protein  58.89 
 
 
90 aa  106  1e-22  Shewanella baltica OS155  Bacteria  hitchhiker  0.0000000022491  n/a   
 
 
-
 
NC_013422  Hneap_0390  histone family protein DNA-binding protein  57.78 
 
 
90 aa  105  2e-22  Halothiobacillus neapolitanus c2  Bacteria  decreased coverage  0.0000165854  n/a   
 
 
-
 
NC_002939  GSU3132  DNA-binding protein HU  59.55 
 
 
94 aa  105  2e-22  Geobacter sulfurreducens PCA  Bacteria  normal  0.246817  n/a   
 
 
-
 
NC_013216  Dtox_0219  histone family protein DNA-binding protein  55.06 
 
 
96 aa  105  2e-22  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.132966  normal 
 
 
-
 
NC_007517  Gmet_0355  histone-like DNA-binding protein  59.55 
 
 
94 aa  105  2e-22  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00204011  normal  0.390975 
 
 
-
 
NC_008709  Ping_1468  DNA-binding protein HU beta subunit  56.67 
 
 
91 aa  105  2e-22  Psychromonas ingrahamii 37  Bacteria  normal  0.961834  normal  0.643607 
 
 
-
 
NC_013889  TK90_0576  histone family protein DNA-binding protein  57.78 
 
 
90 aa  104  3e-22  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0418926 
 
 
-
 
NC_009783  VIBHAR_01420  nucleoid DNA-binding protein  57.78 
 
 
90 aa  105  3e-22  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007517  Gmet_1608  histone-like DNA-binding protein  59.55 
 
 
96 aa  105  3e-22  Geobacter metallireducens GS-15  Bacteria  unclonable  5.49082e-20  normal 
 
 
-
 
NC_007520  Tcr_1180  histone-like DNA-binding protein  56.67 
 
 
90 aa  105  3e-22  Thiomicrospira crunogena XCL-2  Bacteria  unclonable  2.95654e-16  n/a   
 
 
-
 
NC_009901  Spea_2678  histone family protein DNA-binding protein  57.78 
 
 
90 aa  104  3e-22  Shewanella pealeana ATCC 700345  Bacteria  unclonable  0.0000000000589622  n/a   
 
 
-
 
NC_008609  Ppro_1181  histone family protein DNA-binding protein  57.78 
 
 
92 aa  105  3e-22  Pelobacter propionicus DSM 2379  Bacteria  normal  0.42545  n/a   
 
 
-
 
NC_008228  Patl_3133  histone-like DNA-binding protein  55.56 
 
 
90 aa  104  4e-22  Pseudoalteromonas atlantica T6c  Bacteria  unclonable  0.0000000045924  n/a   
 
 
-
 
NC_008321  Shewmr4_0548  histone family protein DNA-binding protein  53.33 
 
 
90 aa  104  4e-22  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3731  histone family protein DNA-binding protein  55.56 
 
 
90 aa  104  4e-22  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1873  HU family DNA-binding protein  57.78 
 
 
91 aa  104  5e-22  Colwellia psychrerythraea 34H  Bacteria  normal  0.972501  n/a   
 
 
-
 
NC_008345  Sfri_2593  histone family protein DNA-binding protein  57.78 
 
 
91 aa  104  5e-22  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.0000000173721  n/a   
 
 
-
 
NC_008530  LGAS_0894  nucleoid DNA-binding protein  60.23 
 
 
91 aa  104  5e-22  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  8.08972e-16  hitchhiker  0.000000000000265027 
 
 
-
 
CP001637  EcDH1_3169  histone family protein DNA-binding protein  57.78 
 
 
90 aa  103  6e-22  Escherichia coli DH1  Bacteria  hitchhiker  0.000005828  n/a   
 
 
-
 
NC_011080  SNSL254_A0500  transcriptional regulator HU subunit beta  57.78 
 
 
90 aa  103  6e-22  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.332585  normal  0.0268714 
 
 
-
 
NC_009092  Shew_2505  histone family protein DNA-binding protein  56.67 
 
 
90 aa  103  6e-22  Shewanella loihica PV-4  Bacteria  hitchhiker  0.0000000791734  normal  0.581146 
 
 
-
 
NC_011094  SeSA_A0510  transcriptional regulator HU subunit beta  57.78 
 
 
90 aa  103  6e-22  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0507646  normal 
 
 
-
 
NC_011149  SeAg_B0491  transcriptional regulator HU subunit beta  57.78 
 
 
90 aa  103  6e-22  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0126716  n/a   
 
 
-
 
NC_011353  ECH74115_0526  transcriptional regulator HU subunit beta  57.78 
 
 
90 aa  103  6e-22  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.00026983  normal  0.698185 
 
 
-
 
NC_009674  Bcer98_2403  histone family protein DNA-binding protein  53.93 
 
 
90 aa  103  6e-22  Bacillus cytotoxicus NVH 391-98  Bacteria  unclonable  0.00000000237544  n/a   
 
 
-
 
NC_010506  Swoo_3110  histone family protein DNA-binding protein  56.67 
 
 
90 aa  103  6e-22  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000105676  hitchhiker  0.00000299463 
 
 
-
 
NC_010658  SbBS512_E0363  transcriptional regulator HU subunit beta  57.78 
 
 
90 aa  103  6e-22  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.00017145  n/a   
 
 
-
 
NC_011059  Paes_0293  histone family protein DNA-binding protein  58.89 
 
 
94 aa  103  6e-22  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.416752  normal  0.0238993 
 
 
-
 
NC_012892  B21_00396  hypothetical protein  57.78 
 
 
90 aa  103  6e-22  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_0476  transcriptional regulator HU subunit beta  57.78 
 
 
90 aa  103  6e-22  Escherichia coli E24377A  Bacteria  hitchhiker  0.000220916  n/a   
 
 
-
 
NC_008309  HS_1538  DNA-binding protein HU  57.78 
 
 
91 aa  103  6e-22  Haemophilus somnus 129PT  Bacteria  unclonable  0.0000000000676058  n/a   
 
 
-
 
NC_008322  Shewmr7_3482  histone family protein DNA-binding protein  53.33 
 
 
90 aa  103  6e-22  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C0554  transcriptional regulator HU subunit beta  57.78 
 
 
90 aa  103  6e-22  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  hitchhiker  0.00736621  normal 
 
 
-
 
NC_011205  SeD_A0493  transcriptional regulator HU subunit beta  57.78 
 
 
90 aa  103  6e-22  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.107938  normal 
 
 
-
 
NC_009800  EcHS_A0517  transcriptional regulator HU subunit beta  57.78 
 
 
90 aa  103  6e-22  Escherichia coli HS  Bacteria  hitchhiker  0.0000000000441181  n/a   
 
 
-
 
NC_010468  EcolC_3192  transcriptional regulator HU subunit beta  57.78 
 
 
90 aa  103  6e-22  Escherichia coli ATCC 8739  Bacteria  normal  0.0216859  hitchhiker  0.00242013 
 
 
-
 
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