92 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Hore_00730  CDS  NC_011899  85052  86140  +  1089  Shikimate/quinate 5-dehydrogenase  YP_002507829  decreased coverage  0.00000000274075  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_00890  CDS  NC_011899  108091  109170  +  1080  DNA integrity scanning protein DisA  YP_002507845  decreased coverage  0.00000000000000509025  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_00900  CDS  NC_011899  109298  109828  +  531  transcriptional regulator, CarD family  YP_002507846  decreased coverage  8.92061e-17  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_00910  CDS  NC_011899  109934  111028  +  1095  PilT protein domain protein  YP_002507847  decreased coverage  0.00000000000000274223  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_01380  CDS  NC_011899  147176  147931  +  756  methionine aminopeptidase, type I  YP_002507894  decreased coverage  0.000000000000165586  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_01500  CDS  NC_011899  154116  154856  +  741  pseudouridylate synthase I  YP_002507906  decreased coverage  8.6087e-16  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_01810  CDS  NC_011899  187499  189499  +  2001  NADH dehydrogenase I subunit G  YP_002507938  decreased coverage  0.000616939  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_02010  CDS  NC_011899  206110  207753  +  1644  chaperonin GroEL  YP_002507958  decreased coverage  0.000193134  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_02460  CDS  NC_011899  253193  253621  +  429  50S ribosomal protein L13  YP_002508002  decreased coverage  0.00000000000000118525  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_02580  CDS  NC_011899  264375  265055  +  681  hypothetical protein  YP_002508014  decreased coverage  7.7302e-16  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_02850  CDS  NC_011899  288086  289285  +  1200  acetylornithine and succinylornithine aminotransferase  YP_002508041  decreased coverage  0.0000577952  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_02860  CDS  NC_011899  289379  291154  +  1776  ATPase  YP_002508042  decreased coverage  0.0000278445  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_03660  CDS  NC_011899  375760  377253  +  1494  hypothetical protein  YP_002508122  decreased coverage  0.000000000000119535  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_03980  CDS  NC_011899  407810  408982  +  1173  putative transmembrane anti-sigma factor  YP_002508152  decreased coverage  0.00000793446  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_04850  CDS  NC_011899  522998  525478  +  2481  heavy metal translocating P-type ATPase  YP_002508238  decreased coverage  0.0000000000573179  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_05050  CDS  NC_011899  549593  552628  +  3036  acriflavin resistance protein  YP_002508258  decreased coverage  0.00000211109  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_05280  CDS  NC_011899  575020  576705  +  1686  pyruvate ferredoxin oxidoreductase, alpha subunit  YP_002508281  decreased coverage  0.00000000487822  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_06270  CDS  NC_011899  678093  678491  +  399  hypothetical protein  YP_002508379  decreased coverage  0.00000000000000136905  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_06280  CDS  NC_011899  678547  679083  +  537  hypothetical protein  YP_002508380  decreased coverage  0.00000000000000337732  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_06290  CDS  NC_011899  679191  679331  +  141  hypothetical protein  YP_002508381  decreased coverage  3.25008e-16  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_06300  CDS  NC_011899  679456  679860  +  405  NusB antitermination factor  YP_002508382  decreased coverage  0.00000000000000202636  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_06310  CDS  NC_011899  680107  680595  +  489  NADH dehydrogenase (ubiquinone) 24 kDa subunit  YP_002508383  decreased coverage  0.00000000000000454733  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_06510  CDS  NC_011899  705380  706270  +  891  farnesyl-diphosphate synthase  YP_002508403  decreased coverage  0.00000000000000111006  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_07210  CDS  NC_011899  779518  780432  +  915  predicted membrane protein  YP_002508473  decreased coverage  0.000000000277975  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_07550  CDS  NC_011899  813115  814428  +  1314  gid protein  YP_002508507  decreased coverage  0.000000000000544627  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_07560  CDS  NC_011899  814566  815111  +  546  ATP-dependent protease peptidase subunit  YP_002508508  decreased coverage  3.22808e-16  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_07570  CDS  NC_011899  815129  816517  +  1389  heat shock protein HslVU, ATPase subunit HslU  YP_002508509  decreased coverage  0.000000000000774703  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_07660  CDS  NC_011899  823206  824105  +  900  translation elongation factor Ts  YP_002508518  decreased coverage  0.00000000136741  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_08060  CDS  NC_011899  866688  867683  +  996  3-isopropylmalate dehydrogenase  YP_002508558  decreased coverage  0.00000000201667  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_08780  CDS  NC_011899  945123  946664  +  1542  ABC transporter related  YP_002508629  decreased coverage  0.00000000334619  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_09180  CDS  NC_011899  992220  992471  +  252  Sporulation protein YlmC/YmxH  YP_002508669  decreased coverage  5.50591e-16  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_09190  CDS  NC_011899  992526  992981  +  456  ATP-cone domain protein  YP_002508670  decreased coverage  0.00000000000000241232  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_09280  CDS  NC_011899  1000866  1002227  -  1362  MATE efflux family protein  YP_002508679  decreased coverage  0.00000476954  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_09290  CDS  NC_011899  1002382  1002669  +  288  hypothetical protein  YP_002508680  decreased coverage  0.000000304566  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_09420  CDS  NC_011899  1014800  1015714  +  915  dihydroorotate oxidase B, catalytic subunit  YP_002508693  decreased coverage  0.000187971  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_09500  CDS  NC_011899  1025774  1026664  +  891  binding-protein-dependent transport systems inner membrane component  YP_002508701  decreased coverage  0.00000000000000144721  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_10210  CDS  NC_011899  1111979  1113175  +  1197  acetate kinase  YP_002508772  decreased coverage  0.0000000000000154307  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_10220  CDS  NC_011899  1113253  1113726  +  474  predicted metal-binding, possibly nucleic acid-binding protein  YP_002508773  decreased coverage  1.30799e-16  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_10390  CDS  NC_011899  1127123  1127809  +  687  cytidylate kinase  YP_002508790  decreased coverage  0.0000000000000240582  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_10630  CDS  NC_011899  1152204  1153088  +  885  Hsp33 protein  YP_002508813  decreased coverage  0.000018588  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_10750  CDS  NC_011899  1167155  1168291  +  1137  major facilitator superfamily MFS_1  YP_002508824  decreased coverage  0.000151203  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_10970  CDS  NC_011899  1192534  1193091  +  558  predicted membrane protein  YP_002508846  decreased coverage  0.00000439104  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_11060  CDS  NC_011899  1200368  1201087  +  720  Radical SAM domain protein  YP_002508854  decreased coverage  0.00221485  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_11070  CDS  NC_011899  1201623  1202420  +  798  periplasmic serine protease (ClpP class)  YP_002508855  decreased coverage  0.000898783  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_11310  CDS  NC_011899  1224857  1226053  +  1197  tryptophan synthase subunit beta  YP_002508878  decreased coverage  0.000000215917  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_11460  CDS  NC_011899  1238598  1238960  -  363  Peptidoglycan-binding LysM  YP_002508893  decreased coverage  4.10627e-17  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_11710  CDS  NC_011899  1264915  1266255  -  1341  potassium uptake protein, TrkH family  YP_002508916  decreased coverage  0.0000213719  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_11960  CDS  NC_011899  1290872  1291429  -  558  CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase  YP_002508941  decreased coverage  3.815e-16  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_12120  CDS  NC_011899  1304895  1305413  -  519  cation antiporter  YP_002508957  decreased coverage  0.00000000000000445781  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_12190  CDS  NC_011899  1311784  1313934  -  2151  (p)ppGpp synthetase I, SpoT/RelA  YP_002508964  decreased coverage  0.000000000855141  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_12270  CDS  NC_011899  1321709  1322230  -  522  signal peptidase I  YP_002508972  decreased coverage  0.0000000081948  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_12780  CDS  NC_011899  1370812  1371681  -  870  ribosomal protein L11 methyltransferase  YP_002509023  decreased coverage  0.0000157571  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_13260  CDS  NC_011899  1425571  1426659  -  1089  hypothetical protein  YP_002509071  decreased coverage  0.000000000000128234  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_13270  CDS  NC_011899  1426807  1427169  -  363  hypothetical protein  YP_002509072  decreased coverage  0.00000000000258165  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_13370  CDS  NC_011899  1434710  1437202  -  2493  Leucyl-tRNA synthetase  YP_002509082  decreased coverage  0.00000131776  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_13510  CDS  NC_011899  1447570  1448673  -  1104  ribosome small subunit-dependent GTPase A  YP_002509096  decreased coverage  0.0000813715  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_13700  CDS  NC_011899  1465250  1465672  +  423  PIN domain protein  YP_002509117  decreased coverage  0.000000000000002252  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_13920  CDS  NC_011899  1483933  1484535  -  603  Carbonate dehydratase  YP_002509137  decreased coverage  0.000593664  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_14100  CDS  NC_011899  1498287  1499567  -  1281  GTP-binding protein Obg/CgtA  YP_002509154  decreased coverage  0.00000000000264035  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_14380  CDS  NC_011899  1523903  1524331  +  429  acid phosphatase/vanadium-dependent haloperoxidase related  YP_002509182  decreased coverage  0.00000000000000292434  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_14550  CDS  NC_011899  1546129  1547427  -  1299  extracellular solute-binding protein family 1  YP_002509199  decreased coverage  0.000000000000299418  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_14560  CDS  NC_011899  1547637  1549973  -  2337  Kojibiose phosphorylase  YP_002509200  decreased coverage  0.000000000528962  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_14570  CDS  NC_011899  1550224  1551120  +  897  1,4-dihydroxy-2-naphthoate octaprenyltransferase  YP_002509201  decreased coverage  0.000000000000679722  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_14580  CDS  NC_011899  1551126  1551590  -  465  molybdenum cofactor synthesis domain protein  YP_002509202  decreased coverage  0.0000000000000401654  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_14860  CDS  NC_011899  1582057  1583838  +  1782  NADH dehydrogenase, FAD-containing subunit  YP_002509230  decreased coverage  0.0000000846924  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_15270  CDS  NC_011899  1633696  1634031  +  336  hypothetical protein  YP_002509271  decreased coverage  1.01889e-17  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_15880  CDS  NC_011899  1701563  1702414  -  852  uncharacterized P-loop ATPase protein UPF0042  YP_002509332  decreased coverage  0.000000000000368631  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_16190  CDS  NC_011899  1736004  1737209  -  1206  extracellular solute-binding protein family 1  YP_002509363  decreased coverage  0.00305219  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_16780  CDS  NC_011899  1799619  1800422  -  804  MotA/TolQ/ExbB proton channel  YP_002509423  decreased coverage  0.000000000859777  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_16790  CDS  NC_011899  1800427  1800630  -  204  flagellar FlbD family protein  YP_002509424  decreased coverage  0.0000000000248236  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_17530  CDS  NC_011899  1874540  1875679  -  1140  lipid-A-disaccharide synthase  YP_002509497  decreased coverage  0.00012447  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_18000  CDS  NC_011899  1924311  1924517  -  207  ribosomal protein L31  YP_002509544  decreased coverage  0.00000000000000315531  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_18180  CDS  NC_011899  1939920  1941668  -  1749  putative Chase2 sensor protein  YP_002509562  decreased coverage  0.0000000000385352  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_18290  CDS  NC_011899  1955468  1957135  -  1668  hydroxylamine reductase  YP_002509573  decreased coverage  0.000000000000343984  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_18300  CDS  NC_011899  1957247  1957768  -  522  hypothetical protein  YP_002509574  decreased coverage  3.1954e-16  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_18890  CDS  NC_011899  2017908  2020247  -  2340  Three-deoxy-D-manno-octulosonic-acid transferase domain protein  YP_002509632  decreased coverage  0.00000000185158  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_19120    NC_011899  2044475  2045751  -  1277      decreased coverage  0.000000000493667  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_19250  CDS  NC_011899  2058283  2059617  +  1335  major facilitator superfamily MFS_1  YP_002509667  decreased coverage  0.00108172  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_20300  CDS  NC_011899  2189439  2191400  -  1962  methionyl-tRNA synthetase  YP_002509770  decreased coverage  0.000027518  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_20310  CDS  NC_011899  2191498  2192661  -  1164  iron-containing alcohol dehydrogenase  YP_002509771  decreased coverage  0.000010752  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_20480  CDS  NC_011899  2209844  2211304  -  1461  inosine-5'-monophosphate dehydrogenase  YP_002509788  decreased coverage  0.00000000012591  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_21650  CDS  NC_011899  2357414  2359060  -  1647  Na/Pi-cotransporter II-related protein  YP_002509906  decreased coverage  0.00000000314807  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_21830  CDS  NC_011899  2373406  2374581  -  1176  histidine kinase  YP_002509924  decreased coverage  0.00305219  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_22500  CDS  NC_011899  2452543  2453718  -  1176  beta-lactamase domain protein  YP_002509990  decreased coverage  0.0000000000000416658  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_22690  CDS  NC_011899  2476431  2477399  -  969  Monosaccharide-transporting ATPase  YP_002510009  decreased coverage  0.00548912  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_22700  CDS  NC_011899  2477396  2478901  -  1506  ABC transporter related  YP_002510010  decreased coverage  0.00201717  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_23060  CDS  NC_011899  2518649  2519566  +  918  cysteine synthase A  YP_002510046  decreased coverage  0.00000000000228532  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_23070  CDS  NC_011899  2519802  2520530  -  729  serine O-acetyltransferase  YP_002510047  decreased coverage  0.000000000000574255  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_23220  CDS  NC_011899  2540846  2541592  -  747  putative sigma E regulatory protein, MucB/RseB  YP_002510062  decreased coverage  0.00000000142114  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_23470  CDS  NC_011899  2565508  2565924  -  417  cell shape determination protein CcmA  YP_002510087  decreased coverage  0.000000000000002252  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_R0003  rRNA  NC_011899  24666  24781  +  116  5S ribosomal RNA    decreased coverage  1.73811e-16  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
-
 
Hore_R0004  tRNA  NC_011899  24792  24866  +  75  tRNA-Gln    decreased coverage  1.40819e-16  n/a    Halothermothrix orenii H 168  Bacteria 
 
 
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