75 homologs were found in PanDaTox collection
for query gene VEA_004116 on replicon NC_013456
Organism: Vibrio sp. Ex25



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013456  VEA_004116  succinate dehydrogenase cytochrome b-556 subunit  100 
 
 		 70 aa  136  1e-31  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_009783  VIBHAR_01351  succinate dehydrogenase cytochrome b556 large membrane subunit  94.29 
 
 		 130 aa  134  6.0000000000000005e-31  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009457  VC0395_A1677  succinate dehydrogenase cytochrome b556 large membrane subunit  87.14 
 
 		 130 aa  111  4.0000000000000004e-24  Vibrio cholerae O395  Bacteria  normal  0.129902  n/a   
 
 
-
 
NC_011312  VSAL_I0842  succinate dehydrogenase cytochrome b556 large membrane subunit  75.36 
 
 		 133 aa  108  3e-23  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_009708  YpsIP31758_2885  succinate dehydrogenase cytochrome b556 large membrane subunit  73.24 
 
 		 125 aa  102  2e-21  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.0000160514  n/a   
 
 
-
 
NC_010159  YpAngola_A1380  succinate dehydrogenase cytochrome b556 large membrane subunit  73.24 
 
 		 129 aa  102  2e-21  Yersinia pestis Angola  Bacteria  hitchhiker  0.00254189  normal  0.334733 
 
 
-
 
NC_010465  YPK_2972  succinate dehydrogenase cytochrome b556 large membrane subunit  73.24 
 
 		 129 aa  102  2e-21  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.040643  n/a   
 
 
-
 
NC_009832  Spro_1263  succinate dehydrogenase cytochrome b556 large membrane subunit  71.83 
 
 		 129 aa  101  5e-21  Serratia proteamaculans 568  Bacteria  normal  0.285763  normal  0.273357 
 
 
-
 
NC_011083  SeHA_C0855  succinate dehydrogenase cytochrome b556 large membrane subunit  65.71 
 
 		 134 aa  94.7  4e-19  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  1  hitchhiker  0.000446892 
 
 
-
 
NC_011080  SNSL254_A0791  succinate dehydrogenase cytochrome b556 large membrane subunit  65.71 
 
 		 134 aa  94.7  4e-19  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.51944  normal  0.101074 
 
 
-
 
NC_011094  SeSA_A0888  succinate dehydrogenase cytochrome b556 large membrane subunit  65.71 
 
 		 134 aa  94.7  4e-19  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.171127  normal  0.76264 
 
 
-
 
NC_011149  SeAg_B0765  succinate dehydrogenase cytochrome b556 large membrane subunit  65.71 
 
 		 134 aa  94.7  4e-19  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.463239  n/a   
 
 
-
 
NC_011205  SeD_A0826  succinate dehydrogenase cytochrome b556 large membrane subunit  65.71 
 
 		 134 aa  94.7  4e-19  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012912  Dd1591_2918  succinate dehydrogenase, cytochrome b556 subunit  65.71 
 
 		 129 aa  93.2  1e-18  Dickeya zeae Ech1591  Bacteria  normal  1  n/a   
 
 
-
 
NC_012917  PC1_1232  succinate dehydrogenase cytochrome b556 large membrane subunit  64.79 
 
 		 129 aa  93.2  1e-18  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013421  Pecwa_3104  succinate dehydrogenase cytochrome b556 large membrane subunit  64.79 
 
 		 129 aa  92.8  1e-18  Pectobacterium wasabiae WPP163  Bacteria  normal  1  n/a   
 
 
-
 
NC_012892  B21_00670  hypothetical protein  62.86 
 
 		 129 aa  92  2e-18  Escherichia coli BL21  Bacteria  normal  1  n/a   
 
 
-
 
CP001509  ECD_00681  succinate dehydrogenase cytochrome b556 large membrane subunit  62.86 
 
 		 129 aa  92  2e-18  Escherichia coli BL21(DE3)  Bacteria  normal  1  n/a   
 
 
-
 
CP001637  EcDH1_2914  succinate dehydrogenase, cytochrome b556 subunit  62.86 
 
 		 134 aa  91.7  3e-18  Escherichia coli DH1  Bacteria  normal  0.0623319  n/a   
 
 
-
 
NC_010658  SbBS512_E0640  succinate dehydrogenase cytochrome b556 large membrane subunit  62.86 
 
 		 134 aa  91.7  3e-18  Shigella boydii CDC 3083-94  Bacteria  normal  0.978603  n/a   
 
 
-
 
NC_010498  EcSMS35_0734  succinate dehydrogenase cytochrome b556 large membrane subunit  62.86 
 
 		 134 aa  92  3e-18  Escherichia coli SMS-3-5  Bacteria  normal  1  normal  0.934433 
 
 
-
 
NC_010468  EcolC_2934  succinate dehydrogenase cytochrome b556 large membrane subunit  62.86 
 
 		 134 aa  91.7  3e-18  Escherichia coli ATCC 8739  Bacteria  normal  0.107095  normal  1 
 
 
-
 
NC_011353  ECH74115_0813  succinate dehydrogenase cytochrome b556 large membrane subunit  62.86 
 
 		 134 aa  91.7  3e-18  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.280294  normal  1 
 
 
-
 
NC_009801  EcE24377A_0748  succinate dehydrogenase cytochrome b556 large membrane subunit  62.86 
 
 		 134 aa  91.7  3e-18  Escherichia coli E24377A  Bacteria  normal  1  n/a   
 
 
-
 
NC_009800  EcHS_A0769  succinate dehydrogenase cytochrome b556 large membrane subunit  62.86 
 
 		 134 aa  91.7  3e-18  Escherichia coli HS  Bacteria  normal  1  n/a   
 
 
-
 
NC_012880  Dd703_1140  succinate dehydrogenase, cytochrome b556 subunit  64.79 
 
 		 129 aa  90.5  7e-18  Dickeya dadantii Ech703  Bacteria  normal  0.669517  n/a   
 
 
-
 
NC_009436  Ent638_1222  succinate dehydrogenase subunit C  56.34 
 
 		 157 aa  87.8  4e-17  Enterobacter sp. 638  Bacteria  normal  1  normal  0.0733546 
 
 
-
 
NC_008577  Shewana3_1706  succinate dehydrogenase subunit C  62.12 
 
 		 131 aa  85.1  3e-16  Shewanella sp. ANA-3  Bacteria  normal  0.0121906  normal  0.572732 
 
 
-
 
NC_008321  Shewmr4_1631  succinate dehydrogenase subunit C  62.12 
 
 		 131 aa  85.1  3e-16  Shewanella sp. MR-4  Bacteria  decreased coverage  0.0000702193  normal  1 
 
 
-
 
NC_008322  Shewmr7_1706  succinate dehydrogenase subunit C  62.12 
 
 		 131 aa  85.1  3e-16  Shewanella sp. MR-7  Bacteria  decreased coverage  0.000208807  normal  1 
 
 
-
 
NC_009438  Sputcn32_2273  succinate dehydrogenase, cytochrome b subunit  60.61 
 
 		 131 aa  84.3  5e-16  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.0000969939  n/a   
 
 
-
 
NC_009901  Spea_1784  succinate dehydrogenase cytochrome b556 subunit  65.08 
 
 		 124 aa  84.3  5e-16  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00000397756  n/a   
 
 
-
 
NC_009665  Shew185_2512  succinate dehydrogenase cytochrome b556 subunit  59.09 
 
 		 131 aa  84  6e-16  Shewanella baltica OS185  Bacteria  decreased coverage  0.00000726446  n/a   
 
 
-
 
NC_009997  Sbal195_2632  succinate dehydrogenase, cytochrome b556 subunit  57.58 
 
 		 131 aa  83.6  9e-16  Shewanella baltica OS195  Bacteria  hitchhiker  0.000174207  normal  0.11492 
 
 
-
 
NC_009052  Sbal_2519  succinate dehydrogenase, cytochrome b subunit  57.58 
 
 		 131 aa  83.6  0.000000000000001  Shewanella baltica OS155  Bacteria  decreased coverage  0.0000447575  n/a   
 
 
-
 
NC_008345  Sfri_2347  succinate dehydrogenase, cytochrome b subunit  63.49 
 
 		 131 aa  82.8  0.000000000000001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.270921  n/a   
 
 
-
 
NC_011663  Sbal223_1832  succinate dehydrogenase, cytochrome b556 subunit  57.58 
 
 		 131 aa  83.6  0.000000000000001  Shewanella baltica OS223  Bacteria  hitchhiker  0.000145214  normal  0.191476 
 
 
-
 
NC_004347  SO_1927  succinate dehydrogenase, cytochrome b556 subunit  59.09 
 
 		 131 aa  82  0.000000000000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008709  Ping_2256  succinate dehydrogenase, cytochrome b subunit  56.25 
 
 		 144 aa  82.8  0.000000000000002  Psychromonas ingrahamii 37  Bacteria  normal  0.247619  normal  0.214454 
 
 
-
 
NC_008700  Sama_1423  succinate dehydrogenase, cytochrome b556 subunit  60.32 
 
 		 131 aa  80.5  0.000000000000007  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.000106154  normal  1 
 
 
-
 
NC_007954  Sden_2187  succinate dehydrogenase, cytochrome b subunit  59.09 
 
 		 131 aa  80.1  0.00000000000001  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00000726424  n/a   
 
 
-
 
NC_010506  Swoo_1833  succinate dehydrogenase, cytochrome b556 subunit  58.73 
 
 		 124 aa  79  0.00000000000002  Shewanella woodyi ATCC 51908  Bacteria  hitchhiker  0.00848853  normal  0.0380637 
 
 
-
 
NC_009831  Ssed_2818  succinate dehydrogenase, cytochrome b subunit  57.14 
 
 		 124 aa  78.2  0.00000000000004  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.0076202  normal  0.952071 
 
 
-
 
NC_008740  Maqu_1150  fumarate reductase, D subunit  53.03 
 
 		 125 aa  73.9  0.0000000000007  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_009092  Shew_1651  succinate dehydrogenase, cytochrome b subunit  60.32 
 
 		 131 aa  72  0.000000000003  Shewanella loihica PV-4  Bacteria  hitchhiker  0.000000800282  normal  1 
 
 
-
 
NC_009654  Mmwyl1_2804  succinate dehydrogenase cytochrome b556 subunit  46.77 
 
 		 110 aa  68.2  0.00000000003  Marinomonas sp. MWYL1  Bacteria  normal  0.179229  normal  1 
 
 
-
 
NC_011138  MADE_01871  putative succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with sdhD  47.69 
 
 		 92 aa  65.5  0.0000000003  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.0568565  n/a   
 
 
-
 
NC_004578  PSPTO_2195  succinate dehydrogenase, cytochrome b556 subunit  43.48 
 
 		 124 aa  64.7  0.0000000004  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.151249  n/a   
 
 
-
 
NC_007005  Psyr_2005  succinate dehydrogenase, cytochrome b subunit  42.03 
 
 		 124 aa  63.2  0.000000001  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0924289  normal  0.135174 
 
 
-
 
NC_007492  Pfl01_1610  succinate dehydrogenase subunit C  40 
 
 		 124 aa  62.8  0.000000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.467782  normal  0.340468 
 
 
-
 
NC_012560  Avin_29810  succinate dehydrogenase cytochrome b556 large membrane subunit  43.55 
 
 		 77 aa  61.6  0.000000003  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_009656  PSPA7_3693  succinate dehydrogenase, cytochrome b556 subunit  40.58 
 
 		 128 aa  59.7  0.00000001  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_44060  succinate dehydrogenase, cytochrome b556 subunit  43.55 
 
 		 128 aa  58.9  0.00000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009439  Pmen_2507  succinate dehydrogenase subunit C  36.23 
 
 		 128 aa  57  0.00000008  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  0.305741 
 
 
-
 
NC_008228  Patl_1795  succinate dehydrogenase, cytochrome b subunit  54.55 
 
 		 124 aa  55.8  0.0000002  Pseudoalteromonas atlantica T6c  Bacteria  decreased coverage  0.000000214378  n/a   
 
 
-
 
NC_002947  PP_4193  succinate dehydrogenase, cytochrome b556 subunit  40.58 
 
 		 128 aa  55.1  0.0000003  Pseudomonas putida KT2440  Bacteria  normal  0.530712  normal  1 
 
 
-
 
NC_010501  PputW619_3516  succinate dehydrogenase, cytochrome b556 subunit  40.58 
 
 		 128 aa  55.5  0.0000003  Pseudomonas putida W619  Bacteria  normal  0.517036  normal  1 
 
 
-
 
NC_009512  Pput_1661  succinate dehydrogenase, cytochrome b556 subunit  40.58 
 
 		 128 aa  55.1  0.0000003  Pseudomonas putida F1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010322  PputGB1_3764  succinate dehydrogenase, cytochrome b556 subunit  40.58 
 
 		 128 aa  55.1  0.0000003  Pseudomonas putida GB-1  Bacteria  normal  0.415406  normal  1 
 
 
-
 
NC_007963  Csal_1213  succinate dehydrogenase subunit C  41.27 
 
 		 125 aa  54.3  0.0000005  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.101411  n/a   
 
 
-
 
NC_003910  CPS_2215  succinate dehydrogenase, cytochrome b556 subunit  49.02 
 
 		 124 aa  52.4  0.000002  Colwellia psychrerythraea 34H  Bacteria  normal  0.172479  n/a   
 
 
-
 
NC_011662  Tmz1t_2550  succinate dehydrogenase, cytochrome b556 subunit  37.31 
 
 		 129 aa  52  0.000003  Thauera sp. MZ1T  Bacteria  normal  0.411749  n/a   
 
 
-
 
NC_006369  lpl0574  succinate dehydrogenase, cytochrome b556 subunit  34.78 
 
 		 124 aa  51.6  0.000004  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_006368  lpp0593  succinate dehydrogenase, cytochrome b556 subunit  34.78 
 
 		 124 aa  51.6  0.000004  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_009524  PsycPRwf_0261  succinate dehydrogenase, cytochrome b556 subunit  40 
 
 		 125 aa  50.4  0.000007  Psychrobacter sp. PRwf-1  Bacteria  normal  0.457874  normal  0.794877 
 
 
-
 
NC_007912  Sde_2110  succinate dehydrogenase subunit C  44.93 
 
 		 124 aa  50.1  0.00001  Saccharophagus degradans 2-40  Bacteria  decreased coverage  0.00000314056  normal  1 
 
 
-
 
NC_010117  COXBURSA331_A1563  succinate dehydrogenase, cytochrome b556 subunit  38.33 
 
 		 125 aa  49.3  0.00002  Coxiella burnetii RSA 331  Bacteria  normal  0.503767  n/a   
 
 
-
 
NC_009727  CBUD_0590  succinate dehydrogenase cytochrome b556 subunit  38.98 
 
 		 165 aa  49.3  0.00002  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  0.1163  n/a   
 
 
-
 
NC_007204  Psyc_0098  succinate dehydrogenase subunit C  37.5 
 
 		 128 aa  48.1  0.00004  Psychrobacter arcticus 273-4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007969  Pcryo_0107  succinate dehydrogenase, cytochrome b subunit  37.5 
 
 		 128 aa  48.1  0.00004  Psychrobacter cryohalolentis K5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009667  Oant_0951  succinate dehydrogenase cytochrome b556 subunit  42.47 
 
 		 132 aa  43.1  0.001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.91234  n/a   
 
 
-
 
NC_011666  Msil_3565  succinate dehydrogenase, cytochrome b556 subunit  50 
 
 		 131 aa  41.6  0.004  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_007614  Nmul_A0863  succinate dehydrogenase, cytochrome b subunit  41.3 
 
 		 125 aa  41.2  0.005  Nitrosospira multiformis ATCC 25196  Bacteria  normal  1  n/a   
 
 
-
 
NC_009505  BOV_1832  succinate dehydrogenase, cytochrome B subunit  35.62 
 
 		 187 aa  40.8  0.007  Brucella ovis ATCC 25840  Bacteria  normal  0.725413  n/a   
 
 
-
 
NC_004310  BR1904  succinate dehydrogenase, cytochrome b556 subunit  35.62 
 
 		 132 aa  40.4  0.009  Brucella suis 1330  Bacteria  normal  1  n/a   
 
 
-
 
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