Gene VSAL_I0842 details

Gene Information

• Locus tag: VSAL_I0842
• Symbol: sdhC
• ID: 6988605
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: +
• Start bp: 937266
• End bp: 937667
• Gene Length: 402 bp
• Protein Length: 133 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 643379246
• Product: succinate dehydrogenase cytochrome b556 large membrane subunit
• Protein accession: YP_002262349
• Protein GI: 209694421
• COG category: [C] Energy production and conversion
• COG ID: [COG2009] Succinate dehydrogenase/fumarate reductase, cytochrome b subunit
• TIGRFAM ID: [TIGR02970] succinate dehydrogenase, cytochrome b556 subunit

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAGCTGA GTGAGCCCCT TGTGAAAGTT AAGAAGTCAA GACCTGTCAA CTTAGATCTA 
CAAACGATCC GTTTTCCAAT AACGGCTATC GCCTCTATTT TACACCGTGT AAGTGGTGTA 
ATTACTTTTG TTTCTGTTGG AATATTGCTT TGGTTATTAA ACCTATCGCT TTCTTCACCT 
ATTGGATTTG CACAAGCCGC TGATCATATC GATGGCTTTT TTGTGACGTT CATTATGTGG 
GGTATCCTGA CTGCTCTCGC TTATCATATT GTTGTTGGTA TTCGTCATTT ACTGATGGAT 
ATGGGACATT TTGAAGAGTT AGAGTCAGCC AGTCAAAGCG CTAAAATTGC GTTTGTAATT 
ACAGCAGTGT TATCTCTTTT AGCAGGAGTA TTGGTATGGT AG 

 

Protein sequence

MELSEPLVKV KKSRPVNLDL QTIRFPITAI ASILHRVSGV ITFVSVGILL WLLNLSLSSP 
IGFAQAADHI DGFFVTFIMW GILTALAYHI VVGIRHLLMD MGHFEELESA SQSAKIAFVI 
TAVLSLLAGV LVW