114 homologs were found in PanDaTox collection
for query gene RSc1113 on replicon NC_003295
Organism: Ralstonia solanacearum GMI1000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_003295  RSc1113  hypothetical protein  100 
 
 
244 aa  512  1e-144  Ralstonia solanacearum GMI1000  Bacteria  hitchhiker  0.0000287552  normal  0.212062 
 
 
-
 
NC_010682  Rpic_0955  protein of unknown function DUF899 thioredoxin family protein  78.42 
 
 
255 aa  417  9.999999999999999e-116  Ralstonia pickettii 12J  Bacteria  decreased coverage  0.000224117  normal  0.0204099 
 
 
-
 
NC_012856  Rpic12D_1052  protein of unknown function DUF899 thioredoxin family protein  74.69 
 
 
244 aa  401  1e-111  Ralstonia pickettii 12D  Bacteria  decreased coverage  0.0000759433  normal  0.0411864 
 
 
-
 
NC_011369  Rleg2_0816  protein of unknown function DUF899 thioredoxin family protein  68.62 
 
 
242 aa  357  9.999999999999999e-98  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.00565144  normal  0.265134 
 
 
-
 
NC_012850  Rleg_0929  protein of unknown function DUF899 thioredoxin family protein  68.2 
 
 
242 aa  353  2e-96  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.312824  normal  0.683768 
 
 
-
 
NC_009511  Swit_4488  protein of unknown function DUF899, thioredoxin family protein  65.98 
 
 
246 aa  346  2e-94  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.394996 
 
 
-
 
NC_010338  Caul_2485  protein of unknown function DUF899 thioredoxin family protein  63.22 
 
 
245 aa  324  8.000000000000001e-88  Caulobacter sp. K31  Bacteria  normal  0.267783  normal 
 
 
-
 
NC_009668  Oant_3485  protein of unknown function DUF899 thioredoxin family protein  62.71 
 
 
241 aa  323  2e-87  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.895959  n/a   
 
 
-
 
NC_008254  Meso_0994  protein of unknown function DUF899, thioredoxin-like  63.91 
 
 
230 aa  318  3.9999999999999996e-86  Chelativorans sp. BNC1  Bacteria  normal  0.617473  n/a   
 
 
-
 
NC_009668  Oant_4055  protein of unknown function DUF899 thioredoxin family protein  61.8 
 
 
236 aa  316  2e-85  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_1818  protein of unknown function DUF899 thioredoxin family protein  58.23 
 
 
258 aa  296  2e-79  Burkholderia phymatum STM815  Bacteria  normal  normal  0.229326 
 
 
-
 
NC_008463  PA14_46820  hypothetical protein  55.37 
 
 
249 aa  292  4e-78  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0659228  decreased coverage  0.000000227534 
 
 
-
 
NC_007948  Bpro_1368  protein of unknown function DUF899, thioredoxin-like  59.15 
 
 
273 aa  290  1e-77  Polaromonas sp. JS666  Bacteria  normal  normal  0.836068 
 
 
-
 
NC_009656  PSPA7_4033  hypothetical protein  54.55 
 
 
249 aa  290  2e-77  Pseudomonas aeruginosa PA7  Bacteria  normal  0.179526  n/a   
 
 
-
 
NC_007948  Bpro_0083  protein of unknown function DUF899, thioredoxin-like  53.23 
 
 
265 aa  283  1.0000000000000001e-75  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_012792  Vapar_6317  protein of unknown function DUF899 thioredoxin family protein  54.89 
 
 
265 aa  280  1e-74  Variovorax paradoxus S110  Bacteria  normal  0.645433  n/a   
 
 
-
 
NC_002947  PP_2851  hypothetical protein  56.07 
 
 
242 aa  273  1.0000000000000001e-72  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_1441  hypothetical protein  51.65 
 
 
244 aa  271  7e-72  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_1526  protein of unknown function DUF899 thioredoxin family protein  53.31 
 
 
245 aa  268  5e-71  Burkholderia phytofirmans PsJN  Bacteria  normal  0.899756  normal 
 
 
-
 
NC_010501  PputW619_2423  protein of unknown function DUF899 thioredoxin family protein  53.91 
 
 
240 aa  268  5.9999999999999995e-71  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_2930  protein of unknown function DUF899 thioredoxin family protein  56.43 
 
 
242 aa  266  2e-70  Pseudomonas putida GB-1  Bacteria  normal  0.0915809  normal 
 
 
-
 
NC_008062  Bcen_6084  protein of unknown function DUF899, thioredoxin-like  53.94 
 
 
254 aa  261  8.999999999999999e-69  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.766101  n/a   
 
 
-
 
NC_008542  Bcen2424_1993  protein of unknown function DUF899, thioredoxin family protein  53.94 
 
 
254 aa  261  8.999999999999999e-69  Burkholderia cenocepacia HI2424  Bacteria  normal  0.255854  n/a   
 
 
-
 
NC_010508  Bcenmc03_2013  protein of unknown function DUF899 thioredoxin family protein  53.94 
 
 
254 aa  261  8.999999999999999e-69  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0767296  normal 
 
 
-
 
NC_009512  Pput_2838  protein of unknown function DUF899, thioredoxin family protein  55.23 
 
 
242 aa  259  4e-68  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A5303  protein of unknown function DUF899, thioredoxin-like  52.55 
 
 
254 aa  251  8.000000000000001e-66  Burkholderia sp. 383  Bacteria  normal  0.789513  normal  0.132054 
 
 
-
 
NC_007434  BURPS1710b_2551  hypothetical protein  52.36 
 
 
254 aa  250  1e-65  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_2026  protein of unknown function DUF899, thioredoxin family protein  53.15 
 
 
254 aa  249  3e-65  Burkholderia ambifaria AMMD  Bacteria  normal  0.517928  n/a   
 
 
-
 
NC_009074  BURPS668_2407  hypothetical protein  51.97 
 
 
254 aa  249  3e-65  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_1895  protein of unknown function DUF899 thioredoxin family protein  52.76 
 
 
254 aa  249  3e-65  Burkholderia ambifaria MC40-6  Bacteria  normal  0.814935  normal 
 
 
-
 
NC_007651  BTH_I2055  hypothetical protein  51.18 
 
 
254 aa  249  4e-65  Burkholderia thailandensis E264  Bacteria  normal  0.478815  n/a   
 
 
-
 
NC_006348  BMA1526  hypothetical protein  51.97 
 
 
254 aa  248  6e-65  Burkholderia mallei ATCC 23344  Bacteria  normal  0.153792  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2026  hypothetical protein  51.97 
 
 
254 aa  248  6e-65  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A3286  hypothetical protein  51.97 
 
 
254 aa  248  6e-65  Burkholderia mallei NCTC 10229  Bacteria  normal  0.0189775  n/a   
 
 
-
 
NC_009080  BMA10247_1297  hypothetical protein  51.97 
 
 
254 aa  248  6e-65  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_2459  hypothetical protein  51.97 
 
 
254 aa  248  7e-65  Burkholderia pseudomallei 1106a  Bacteria  normal  0.0588117  n/a   
 
 
-
 
NC_010084  Bmul_1283  protein of unknown function DUF899 thioredoxin family protein  50.98 
 
 
254 aa  248  9e-65  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0515883  normal  0.391418 
 
 
-
 
NC_012856  Rpic12D_1377  protein of unknown function DUF899 thioredoxin family protein  49.8 
 
 
256 aa  248  9e-65  Ralstonia pickettii 12D  Bacteria  normal  0.349929  normal 
 
 
-
 
NC_010682  Rpic_1313  protein of unknown function DUF899 thioredoxin family protein  49.8 
 
 
256 aa  247  1e-64  Ralstonia pickettii 12J  Bacteria  normal  normal  0.603997 
 
 
-
 
NC_013037  Dfer_2074  protein of unknown function DUF899 thioredoxin family protein  51.67 
 
 
258 aa  247  1e-64  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_1073  protein of unknown function DUF899 thioredoxin family protein  52.48 
 
 
241 aa  245  4e-64  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_1332  protein of unknown function DUF899, thioredoxin-like  47.94 
 
 
272 aa  244  9e-64  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_4116  protein of unknown function DUF899 thioredoxin family protein  48.81 
 
 
255 aa  244  9.999999999999999e-64  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5073  protein of unknown function DUF899 thioredoxin family protein  48.77 
 
 
257 aa  243  1.9999999999999999e-63  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.309281 
 
 
-
 
NC_007953  Bxe_C0023  hypothetical protein  51.18 
 
 
253 aa  241  1e-62  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.428755 
 
 
-
 
NC_009485  BBta_6459  hypothetical protein  49.8 
 
 
253 aa  240  2e-62  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.335869  normal  0.619063 
 
 
-
 
NC_007952  Bxe_B0544  hypothetical protein  48.22 
 
 
255 aa  238  5e-62  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.457717 
 
 
-
 
NC_008687  Pden_3150  protein of unknown function DUF899, thioredoxin family protein  51.1 
 
 
228 aa  234  7e-61  Paracoccus denitrificans PD1222  Bacteria  normal  0.3957  normal 
 
 
-
 
NC_009511  Swit_4847  protein of unknown function DUF899, thioredoxin family protein  51.95 
 
 
232 aa  234  1.0000000000000001e-60  Sphingomonas wittichii RW1  Bacteria  normal  0.890001  normal 
 
 
-
 
NC_013739  Cwoe_0616  protein of unknown function DUF899 thioredoxin family protein  52.16 
 
 
244 aa  232  3e-60  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_0353  protein of unknown function DUF899 thioredoxin family protein  47.24 
 
 
255 aa  230  2e-59  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.00646248  normal  0.96044 
 
 
-
 
NC_010625  Bphy_6464  protein of unknown function DUF899 thioredoxin family protein  48.43 
 
 
256 aa  228  6e-59  Burkholderia phymatum STM815  Bacteria  normal  normal  0.586164 
 
 
-
 
NC_007974  Rmet_5691  Thioredoxin-(TRX) like protein  50 
 
 
257 aa  221  9.999999999999999e-57  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_2342  protein of unknown function DUF899 thioredoxin family protein  45.38 
 
 
265 aa  216  2.9999999999999998e-55  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.140568 
 
 
-
 
NC_012850  Rleg_2672  protein of unknown function DUF899 thioredoxin family protein  45.38 
 
 
265 aa  212  3.9999999999999995e-54  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.087051  normal 
 
 
-
 
NC_009719  Plav_0967  protein of unknown function DUF899 thioredoxin family protein  44.54 
 
 
266 aa  203  2e-51  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1335  protein of unknown function DUF899, thioredoxin family protein  43.48 
 
 
260 aa  195  5.000000000000001e-49  Pseudomonas mendocina ymp  Bacteria  normal  0.146435  normal 
 
 
-
 
NC_009077  Mjls_3921  protein of unknown function DUF899, thioredoxin family protein  45.19 
 
 
223 aa  191  7e-48  Mycobacterium sp. JLS  Bacteria  normal  0.0512344  normal  0.178262 
 
 
-
 
NC_008146  Mmcs_3906  protein of unknown function DUF899, thioredoxin-like protein  45.19 
 
 
223 aa  191  9e-48  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_3980  protein of unknown function DUF899, thioredoxin family protein  45.19 
 
 
223 aa  191  9e-48  Mycobacterium sp. KMS  Bacteria  normal  0.590341  normal 
 
 
-
 
NC_009338  Mflv_2284  protein of unknown function DUF899, thioredoxin family protein  43.93 
 
 
224 aa  186  2e-46  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.41995 
 
 
-
 
NC_013739  Cwoe_4051  protein of unknown function DUF899 thioredoxin family protein  47.22 
 
 
238 aa  184  1.0000000000000001e-45  Conexibacter woesei DSM 14684  Bacteria  normal  0.541879  normal 
 
 
-
 
NC_013595  Sros_0313  protein of unknown function DUF899, thioredoxin family protein  44.35 
 
 
234 aa  184  1.0000000000000001e-45  Streptosporangium roseum DSM 43021  Bacteria  normal  0.316291  normal 
 
 
-
 
NC_008726  Mvan_4382  protein of unknown function DUF899, thioredoxin family protein  42.26 
 
 
224 aa  184  1.0000000000000001e-45  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_2736  protein of unknown function DUF899, thioredoxin family protein  42.39 
 
 
222 aa  181  9.000000000000001e-45  Salinispora tropica CNB-440  Bacteria  normal  0.0311425  normal  0.559549 
 
 
-
 
NC_013093  Amir_4093  protein of unknown function DUF899 thioredoxin family protein  43.2 
 
 
257 aa  173  2.9999999999999996e-42  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1120  protein of unknown function DUF899 thioredoxin family protein  40.82 
 
 
255 aa  168  6e-41  Opitutus terrae PB90-1  Bacteria  normal  0.845811  normal 
 
 
-
 
NC_013093  Amir_4114  protein of unknown function DUF899 thioredoxin family protein  40.43 
 
 
232 aa  167  2e-40  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_0865  protein of unknown function DUF899 thioredoxin family protein  39.6 
 
 
223 aa  159  3e-38  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_1142  protein of unknown function DUF899, thioredoxin-like protein  36.82 
 
 
231 aa  150  1e-35  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_1159  protein of unknown function DUF899, thioredoxin family protein  36.82 
 
 
231 aa  150  1e-35  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_1169  protein of unknown function DUF899, thioredoxin family protein  36.43 
 
 
231 aa  149  3e-35  Mycobacterium sp. JLS  Bacteria  normal  0.768824  normal  0.199001 
 
 
-
 
NC_010625  Bphy_7225  protein of unknown function DUF899 thioredoxin family protein  37.7 
 
 
261 aa  143  2e-33  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_012792  Vapar_6078  protein of unknown function DUF899 thioredoxin family protein  38.57 
 
 
265 aa  143  3e-33  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_2487  protein of unknown function DUF899 thioredoxin family protein  37.67 
 
 
262 aa  137  1e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_0692  protein of unknown function DUF899, thioredoxin family protein  35.08 
 
 
241 aa  135  5e-31  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.0179397 
 
 
-
 
NC_009636  Smed_1280  protein of unknown function DUF899 thioredoxin family protein  36.77 
 
 
253 aa  133  1.9999999999999998e-30  Sinorhizobium medicae WSM419  Bacteria  normal  0.127918  normal  0.405689 
 
 
-
 
NC_011369  Rleg2_2194  protein of unknown function DUF899 thioredoxin family protein  35.87 
 
 
261 aa  129  4.0000000000000003e-29  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.167209  normal  0.0853422 
 
 
-
 
NC_008009  Acid345_1333  protein of unknown function DUF899, thioredoxin-like  34.43 
 
 
266 aa  122  5e-27  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.726839  normal 
 
 
-
 
NC_014158  Tpau_3564  protein of unknown function DUF899 thioredoxin family protein  34.72 
 
 
229 aa  102  5e-21  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.236943  n/a   
 
 
-
 
NC_012669  Bcav_0282  protein of unknown function DUF899 thioredoxin family protein  31.4 
 
 
233 aa  99.4  5e-20  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.0258482 
 
 
-
 
NC_013172  Bfae_00900  hypothetical protein  33.49 
 
 
232 aa  99  6e-20  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_6291  hypothetical protein  32.41 
 
 
260 aa  95.9  6e-19  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_0326  protein of unknown function DUF899, thioredoxin family protein  30.45 
 
 
229 aa  94.7  1e-18  Mycobacterium sp. JLS  Bacteria  normal  normal  0.497022 
 
 
-
 
NC_008146  Mmcs_0337  protein of unknown function DUF899, thioredoxin-like protein  30.45 
 
 
229 aa  94  2e-18  Mycobacterium sp. MCS  Bacteria  normal  0.0510576  n/a   
 
 
-
 
NC_008705  Mkms_0347  protein of unknown function DUF899, thioredoxin family protein  30.45 
 
 
229 aa  94  2e-18  Mycobacterium sp. KMS  Bacteria  normal  normal  0.33372 
 
 
-
 
NC_008726  Mvan_2972  protein of unknown function DUF899, thioredoxin family protein  31.28 
 
 
228 aa  92  8e-18  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.169644  normal  0.281677 
 
 
-
 
NC_009338  Mflv_3255  protein of unknown function DUF899, thioredoxin family protein  31.63 
 
 
231 aa  90.9  1e-17  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_1510  protein of unknown function DUF899,thioredoxin-like  31.02 
 
 
267 aa  91.3  1e-17  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0290677  n/a   
 
 
-
 
NC_009972  Haur_4695  protein of unknown function DUF899 thioredoxin family protein  29.52 
 
 
265 aa  88.6  9e-17  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_2314  protein of unknown function DUF899 thioredoxin family protein  28.9 
 
 
260 aa  85.5  6e-16  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_4042  protein of unknown function DUF899 thioredoxin family protein  30.28 
 
 
260 aa  83.2  0.000000000000003  Frankia sp. EAN1pec  Bacteria  normal  normal  0.0967044 
 
 
-
 
NC_007777  Francci3_1617  protein of unknown function DUF899, thioredoxin-like  29.36 
 
 
260 aa  80.5  0.00000000000002  Frankia sp. CcI3  Bacteria  normal  0.780287  normal  0.292856 
 
 
-
 
NC_013131  Caci_2142  protein of unknown function DUF899 thioredoxin family protein  28.77 
 
 
239 aa  79  0.00000000000007  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_2183  protein of unknown function DUF899 thioredoxin family protein  28.51 
 
 
230 aa  77.4  0.0000000000002  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0511946 
 
 
-
 
NC_013172  Bfae_22490  hypothetical protein  30.28 
 
 
256 aa  74.7  0.000000000001  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3245  hypothetical protein  27.8 
 
 
231 aa  73.6  0.000000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_4678  protein of unknown function DUF899 thioredoxin family protein  25.99 
 
 
243 aa  72  0.000000000009  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_011366  Rleg2_5933  protein of unknown function DUF899 thioredoxin family protein  25.71 
 
 
233 aa  70.5  0.00000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.10378  normal  0.102215 
 
 
-
 
NC_007348  Reut_B4359  hypothetical protein  26.7 
 
 
232 aa  70.5  0.00000000003  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
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