More than 300 homologs were found in PanDaTox collection
for query gene RPB_3601 on replicon NC_007778
Organism: Rhodopseudomonas palustris HaA2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007348  Reut_B3515  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  73.33 
 
 
426 aa  639    Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_4745  acyl-CoA dehydrogenase domain-containing protein  76.18 
 
 
430 aa  674    Caulobacter sp. K31  Bacteria  normal  normal  0.0335795 
 
 
-
 
NC_007778  RPB_3601  Acyl-CoA dehydrogenase-like  100 
 
 
424 aa  887    Rhodopseudomonas palustris HaA2  Bacteria  normal  0.86159  normal  0.643653 
 
 
-
 
NC_007794  Saro_0282  acyl-CoA dehydrogenase-like  74.59 
 
 
433 aa  671    Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1866  acyl-CoA dehydrogenase-like  92.92 
 
 
448 aa  838    Rhodopseudomonas palustris BisB5  Bacteria  normal  0.265676  normal  0.117685 
 
 
-
 
NC_009485  BBta_2922  putative acyl-CoA dehydrogenase  90.57 
 
 
424 aa  808    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1859  acyl-CoA dehydrogenase-like protein  74.88 
 
 
431 aa  667    Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.881726 
 
 
-
 
NC_011004  Rpal_1963  acyl-CoA dehydrogenase domain protein  96.23 
 
 
424 aa  856    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.251732  n/a   
 
 
-
 
NC_009719  Plav_1699  acyl-CoA dehydrogenase domain-containing protein  71.06 
 
 
431 aa  627  1e-178  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.0427621 
 
 
-
 
NC_013441  Gbro_4583  acyl-CoA dehydrogenase domain protein  62.95 
 
 
428 aa  523  1e-147  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_0774  acyl-CoA dehydrogenase domain protein  63.06 
 
 
419 aa  516  1.0000000000000001e-145  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_1892  acyl-CoA dehydrogenase domain-containing protein  61.58 
 
 
412 aa  511  1e-143  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
BN001302  ANIA_03880  conserved hypothetical protein  58.47 
 
 
458 aa  507  9.999999999999999e-143  Aspergillus nidulans FGSC A4  Eukaryota  normal  normal 
 
 
-
 
NC_009338  Mflv_4468  acyl-CoA dehydrogenase domain-containing protein  61.1 
 
 
412 aa  504  9.999999999999999e-143  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0390971 
 
 
-
 
NC_009077  Mjls_1556  acyl-CoA dehydrogenase domain-containing protein  61.34 
 
 
412 aa  507  9.999999999999999e-143  Mycobacterium sp. JLS  Bacteria  normal  0.707279  normal  0.518626 
 
 
-
 
NC_008146  Mmcs_1586  acyl-CoA dehydrogenase-like protein  61.34 
 
 
412 aa  507  9.999999999999999e-143  Mycobacterium sp. MCS  Bacteria  normal  0.775062  n/a   
 
 
-
 
NC_008705  Mkms_1610  acyl-CoA dehydrogenase domain-containing protein  61.34 
 
 
412 aa  507  9.999999999999999e-143  Mycobacterium sp. KMS  Bacteria  normal  0.181826  normal 
 
 
-
 
NC_013743  Htur_2326  acyl-CoA dehydrogenase domain protein  37.44 
 
 
398 aa  236  6e-61  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_013922  Nmag_3415  acyl-CoA dehydrogenase domain protein  36.15 
 
 
414 aa  235  1.0000000000000001e-60  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_009523  RoseRS_3775  acyl-CoA dehydrogenase domain-containing protein  33.33 
 
 
388 aa  174  1.9999999999999998e-42  Roseiflexus sp. RS-1  Bacteria  normal  0.0119178  unclonable  0.00000752707 
 
 
-
 
NC_009767  Rcas_1109  acyl-CoA dehydrogenase domain-containing protein  32.48 
 
 
388 aa  169  7e-41  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.168915  normal 
 
 
-
 
NC_011831  Cagg_2382  acyl-CoA dehydrogenase domain protein  30.48 
 
 
389 aa  169  8e-41  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_014150  Bmur_1546  acyl-CoA dehydrogenase domain protein  31.71 
 
 
381 aa  167  2.9999999999999998e-40  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_1590  acyl-CoA dehydrogenase domain protein  30.17 
 
 
396 aa  166  8e-40  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.663907 
 
 
-
 
NC_007348  Reut_B4154  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  31.52 
 
 
410 aa  165  1.0000000000000001e-39  Ralstonia eutropha JMP134  Bacteria  normal  0.328631  n/a   
 
 
-
 
NC_008025  Dgeo_0736  acyl-CoA dehydrogenase-like protein  34.47 
 
 
379 aa  164  4.0000000000000004e-39  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.763418 
 
 
-
 
NC_008699  Noca_4293  acyl-CoA dehydrogenase domain-containing protein  30 
 
 
383 aa  162  1e-38  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_0155  acyl-CoA dehydrogenase domain protein  29.29 
 
 
388 aa  161  2e-38  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  hitchhiker  0.000000954759  n/a   
 
 
-
 
NC_007333  Tfu_1284  putative acyl-CoA dehydrogenase  30.14 
 
 
388 aa  160  4e-38  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0733  acyl-CoA dehydrogenase domain protein  35 
 
 
377 aa  160  6e-38  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_1999  acyl-CoA dehydrogenase  35.45 
 
 
391 aa  157  2e-37  Thermobifida fusca YX  Bacteria  normal  0.0248728  n/a   
 
 
-
 
NC_013131  Caci_6770  acyl-CoA dehydrogenase domain protein  31.98 
 
 
390 aa  157  3e-37  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.210456  normal  0.358603 
 
 
-
 
NC_014210  Ndas_1118  acyl-CoA dehydrogenase domain protein  36.46 
 
 
391 aa  156  5.0000000000000005e-37  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.549204 
 
 
-
 
NC_010718  Nther_1881  butyryl-CoA dehydrogenase  31.18 
 
 
379 aa  156  7e-37  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.593492  normal  0.222475 
 
 
-
 
NC_013202  Hmuk_2068  acyl-CoA dehydrogenase domain protein  29.72 
 
 
385 aa  154  2.9999999999999998e-36  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal 
 
 
-
 
NC_013159  Svir_33210  acyl-CoA dehydrogenase  30.21 
 
 
389 aa  154  4e-36  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.243663  normal  0.754036 
 
 
-
 
NC_009972  Haur_4391  acyl-CoA dehydrogenase domain-containing protein  31.01 
 
 
386 aa  153  5e-36  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_4410  acyl-CoA dehydrogenase  36.4 
 
 
410 aa  153  5e-36  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.000319161  normal  0.518491 
 
 
-
 
NC_013440  Hoch_3778  acyl-CoA dehydrogenase domain protein  32.14 
 
 
382 aa  153  7e-36  Haliangium ochraceum DSM 14365  Bacteria  normal  0.341587  normal  0.271407 
 
 
-
 
NC_009077  Mjls_1737  acyl-CoA dehydrogenase domain-containing protein  33.33 
 
 
391 aa  152  1e-35  Mycobacterium sp. JLS  Bacteria  normal  0.375234  normal 
 
 
-
 
NC_012793  GWCH70_3342  acyl-CoA dehydrogenase domain protein  29.37 
 
 
379 aa  152  1e-35  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_1756  acyl-CoA dehydrogenase-like protein  33.33 
 
 
391 aa  152  1e-35  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000373  branched-chain acyl-CoA dehydrogenase  29.59 
 
 
384 aa  152  1e-35  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_1803  acyl-CoA dehydrogenase domain-containing protein  33.33 
 
 
391 aa  152  1e-35  Mycobacterium sp. KMS  Bacteria  normal  0.992024  normal  0.411519 
 
 
-
 
NC_011368  Rleg2_4384  acyl-CoA dehydrogenase domain protein  32.11 
 
 
375 aa  150  3e-35  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.17615  normal 
 
 
-
 
NC_008726  Mvan_1974  acyl-CoA dehydrogenase domain-containing protein  32.8 
 
 
392 aa  150  3e-35  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.204851  normal 
 
 
-
 
NC_007492  Pfl01_2867  Acyl-CoA dehydrogenase-like  33.43 
 
 
375 aa  150  5e-35  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.967944  normal  0.115681 
 
 
-
 
NC_008347  Mmar10_2691  acyl-CoA dehydrogenase domain-containing protein  32.89 
 
 
391 aa  150  6e-35  Maricaulis maris MCS10  Bacteria  normal  0.602667  normal 
 
 
-
 
NC_007348  Reut_B4257  butyryl-CoA dehydrogenase  30.69 
 
 
377 aa  149  7e-35  Ralstonia eutropha JMP134  Bacteria  normal  0.725306  n/a   
 
 
-
 
NC_013922  Nmag_3108  acyl-CoA dehydrogenase domain protein  28.57 
 
 
383 aa  149  7e-35  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_008740  Maqu_2132  butyryl-CoA dehydrogenase  32.77 
 
 
388 aa  149  8e-35  Marinobacter aquaeolei VT8  Bacteria  normal  0.627987  n/a   
 
 
-
 
NC_013757  Gobs_1375  acyl-CoA dehydrogenase domain protein  31.48 
 
 
384 aa  149  9e-35  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0319  acyl-CoA dehydrogenase domain-containing protein  30.17 
 
 
383 aa  149  1.0000000000000001e-34  Roseiflexus sp. RS-1  Bacteria  normal  0.339666  normal  0.0442463 
 
 
-
 
NC_009767  Rcas_0249  acyl-CoA dehydrogenase domain-containing protein  30.7 
 
 
383 aa  148  1.0000000000000001e-34  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.538468  normal  0.417839 
 
 
-
 
NC_010717  PXO_01704  acyl-CoA dehydrogenase family member 8  35.74 
 
 
393 aa  148  2.0000000000000003e-34  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.791292  n/a   
 
 
-
 
NC_013411  GYMC61_1327  acyl-CoA dehydrogenase domain protein  27.62 
 
 
399 aa  147  2.0000000000000003e-34  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_1527  acyl-CoA dehydrogenase domain-containing protein  30.93 
 
 
385 aa  148  2.0000000000000003e-34  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_1491  acyl-CoA dehydrogenase domain-containing protein  30.93 
 
 
385 aa  148  2.0000000000000003e-34  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_4370  acyl-CoA dehydrogenase domain-containing protein  31.19 
 
 
404 aa  148  2.0000000000000003e-34  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_1941  butyryl-CoA dehydrogenase  30.85 
 
 
385 aa  148  2.0000000000000003e-34  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_013922  Nmag_2901  acyl-CoA dehydrogenase domain protein  37.36 
 
 
379 aa  148  2.0000000000000003e-34  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_1399  acyl-CoA dehydrogenase domain-containing protein  31.11 
 
 
385 aa  147  3e-34  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A4257  putative acyl-CoA dehydrogenase  33.33 
 
 
376 aa  147  3e-34  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.217203 
 
 
-
 
NC_011663  Sbal223_2854  acyl-CoA dehydrogenase domain protein  30.93 
 
 
385 aa  147  3e-34  Shewanella baltica OS223  Bacteria  normal  0.715109  hitchhiker  0.0000000460252 
 
 
-
 
NC_013093  Amir_1569  acyl-CoA dehydrogenase domain protein  31.4 
 
 
389 aa  147  3e-34  Actinosynnema mirum DSM 43827  Bacteria  normal  0.881248  n/a   
 
 
-
 
NC_009052  Sbal_1497  acyl-CoA dehydrogenase domain-containing protein  30.93 
 
 
385 aa  147  3e-34  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_013743  Htur_0919  acyl-CoA dehydrogenase domain protein  30.17 
 
 
383 aa  147  4.0000000000000006e-34  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_007492  Pfl01_2865  Acyl-CoA dehydrogenase-like  31.53 
 
 
383 aa  147  5e-34  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0509295  normal  0.212771 
 
 
-
 
NC_012854  Rleg_6504  acyl-CoA dehydrogenase domain protein  32.11 
 
 
375 aa  147  5e-34  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.285028  normal  0.547313 
 
 
-
 
NC_013525  Tter_0364  acyl-CoA dehydrogenase domain protein  30.64 
 
 
386 aa  146  7.0000000000000006e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007511  Bcep18194_B2484  Acyl-CoA dehydrogenase  29.66 
 
 
395 aa  146  7.0000000000000006e-34  Burkholderia sp. 383  Bacteria  normal  normal  0.959704 
 
 
-
 
NC_006274  BCZK5042  short-chain acyl-CoA dehydrogenase; butyryl-CoA dehydrogenase  31.37 
 
 
376 aa  146  9e-34  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1340  butyryl-CoA dehydrogenase  32.96 
 
 
385 aa  145  9e-34  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.92296  n/a   
 
 
-
 
NC_013743  Htur_2576  acyl-CoA dehydrogenase domain protein  30 
 
 
378 aa  145  9e-34  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_010501  PputW619_3455  acyl-CoA dehydrogenase domain-containing protein  32.4 
 
 
375 aa  145  1e-33  Pseudomonas putida W619  Bacteria  normal  normal  0.129524 
 
 
-
 
NC_009901  Spea_2781  acyl-CoA dehydrogenase domain-containing protein  31.58 
 
 
385 aa  145  1e-33  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_2353  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal  31.91 
 
 
378 aa  145  1e-33  Dechloromonas aromatica RCB  Bacteria  normal  0.663187  normal  0.71414 
 
 
-
 
NC_013131  Caci_5525  acyl-CoA dehydrogenase domain protein  31.78 
 
 
397 aa  145  1e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_2471  butyryl-CoA dehydrogenase  29.36 
 
 
597 aa  145  1e-33  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B5487  acyl-CoA dehydrogenase  30.71 
 
 
381 aa  145  1e-33  Bacillus cereus G9842  Bacteria  normal  0.0302943  hitchhiker  1.44799e-22 
 
 
-
 
NC_011830  Dhaf_2695  acyl-CoA dehydrogenase domain protein  29.8 
 
 
382 aa  145  1e-33  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_1570  acyl-CoA dehydrogenase domain protein  31.75 
 
 
383 aa  145  1e-33  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_3889  acyl-CoA dehydrogenase domain-containing protein  28.54 
 
 
395 aa  144  2e-33  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0927975  normal  0.409924 
 
 
-
 
NC_010681  Bphyt_0459  acyl-CoA dehydrogenase domain protein  33.33 
 
 
376 aa  144  2e-33  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.672922 
 
 
-
 
NC_007643  Rru_A1835  butyryl-CoA dehydrogenase  32.39 
 
 
379 aa  144  2e-33  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.571593  n/a   
 
 
-
 
NC_011725  BCB4264_A5465  acyl-CoA dehydrogenase  30.43 
 
 
381 aa  144  2e-33  Bacillus cereus B4264  Bacteria  hitchhiker  0.000680329  n/a   
 
 
-
 
NC_009512  Pput_2279  acyl-CoA dehydrogenase domain-containing protein  30.56 
 
 
383 aa  144  2e-33  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_0428  acyl-CoA dehydrogenase-like protein  29.51 
 
 
380 aa  145  2e-33  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.871589  normal  0.2576 
 
 
-
 
NC_008048  Sala_3010  acyl-CoA dehydrogenase-like protein  33.16 
 
 
387 aa  145  2e-33  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.157219 
 
 
-
 
NC_011658  BCAH187_A5520  acyl-CoA dehydrogenase  30.43 
 
 
381 aa  144  3e-33  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_3365  acyl-CoA dehydrogenase domain protein  31.03 
 
 
381 aa  144  3e-33  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.122497 
 
 
-
 
NC_005945  BAS5191  acyl-CoA dehydrogenase  30.7 
 
 
376 aa  144  3e-33  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_5026  short-chain acyl-CoA dehydrogenase; butyryl-CoA dehydrogenase  30.43 
 
 
376 aa  144  3e-33  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_2684  putative acyl-CoA dehydrogenase  32.37 
 
 
375 aa  144  3e-33  Pseudomonas aeruginosa PA7  Bacteria  normal  0.126402  n/a   
 
 
-
 
NC_007530  GBAA_5587  acyl-CoA dehydrogenase  30.7 
 
 
376 aa  144  3e-33  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_1707  butyryl-CoA dehydrogenase  30.59 
 
 
388 aa  144  3e-33  Rubrobacter xylanophilus DSM 9941  Bacteria  decreased coverage  0.00000836039  n/a   
 
 
-
 
NC_011773  BCAH820_5435  acyl-CoA dehydrogenase  30.43 
 
 
376 aa  144  3e-33  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000000000529924 
 
 
-
 
NC_003909  BCE_5473  acyl-CoA dehydrogenase  30.43 
 
 
376 aa  144  4e-33  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_2548  acyl-CoA dehydrogenase domain protein  32.27 
 
 
375 aa  144  4e-33  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.314153  n/a   
 
 
-
 
NC_008554  Sfum_3931  acyl-CoA dehydrogenase domain-containing protein  30.08 
 
 
400 aa  144  4e-33  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.543045 
 
 
-
 
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