48 homologs were found in PanDaTox collection
for query gene PP_2269 on replicon NC_002947
Organism: Pseudomonas putida KT2440



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_002947  PP_2269  N-acetylmuramoyl-L-alanine amidase, putative  100 
 
 		 149 aa  314  2e-85  Pseudomonas putida KT2440  Bacteria  normal  0.0638229  hitchhiker  0.00820304 
 
 
-
 
NC_009511  Swit_4464  N-acetylmuramoyl-L-alanine amidase  42.76 
 
 		 146 aa  105  2e-22  Sphingomonas wittichii RW1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013132  Cpin_0282  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  43.85 
 
 		 136 aa  101  4e-21  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.567186  normal  1 
 
 
-
 
NC_002950  PG2038  N-acetylmuramoyl-L-alanine amidase, putative  42.5 
 
 		 132 aa  95.9  2e-19  Porphyromonas gingivalis W83  Bacteria  n/a    unclonable  0.000000000469429 
 
 
-
 
NC_011901  Tgr7_0427  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  34.81 
 
 		 164 aa  95.1  3e-19  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.531523  n/a   
 
 
-
 
NC_007947  Mfla_2707  N-acetylmuramoyl-L-alanine amidase  33.15 
 
 		 184 aa  85.9  2e-16  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.00000658239  normal  1 
 
 
-
 
NC_010424  Daud_1669  N-acetylmuramoyl-L-alanine amidase  36.22 
 
 		 173 aa  75.1  0.0000000000003  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.761458  n/a   
 
 
-
 
NC_008261  CPF_0545  putative N-acetylmuramoyl-L-alanine amidase  34.81 
 
 		 157 aa  75.1  0.0000000000003  Clostridium perfringens ATCC 13124  Bacteria  normal  1  n/a   
 
 
-
 
NC_008262  CPR_0529  N-acetylmuramoyl-l-alanine amidase, putative  35.34 
 
 		 222 aa  74.3  0.0000000000005  Clostridium perfringens SM101  Bacteria  normal  0.549299  n/a   
 
 
-
 
NC_007948  Bpro_3775  negative regulator of AmpC, AmpD  27.6 
 
 		 203 aa  71.6  0.000000000003  Polaromonas sp. JS666  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009674  Bcer98_2303  N-acetylmuramoyl-L-alanine amidase  31.47 
 
 		 157 aa  69.7  0.00000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  1  n/a   
 
 
-
 
NC_011725  BCB4264_A3745  putative N-acetylmuramoyl-L-alanine amidase  31.47 
 
 		 150 aa  67.8  0.00000000004  Bacillus cereus B4264  Bacteria  normal  1  n/a   
 
 
-
 
NC_011772  BCG9842_B1572  putative N-acetylmuramoyl-L-alanine amidase  32.17 
 
 		 150 aa  67.8  0.00000000005  Bacillus cereus G9842  Bacteria  normal  0.577314  normal  0.236623 
 
 
-
 
NC_010184  BcerKBAB4_3323  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  31.47 
 
 		 150 aa  65.5  0.0000000002  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0947828  n/a   
 
 
-
 
NC_003909  BCE_3666  N-acetylmuramoyl-L-alanine amidase, putative  30.77 
 
 		 150 aa  65.5  0.0000000002  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_011658  BCAH187_A3670  putative N-acetylmuramoyl-L-alanine amidase  32.59 
 
 		 152 aa  64.7  0.0000000004  Bacillus cereus AH187  Bacteria  normal  0.0492519  n/a   
 
 
-
 
NC_007530  GBAA_3698  N-acetylmuramoyl-L-alanine amidase  31.11 
 
 		 150 aa  63.9  0.0000000006  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.694196  n/a   
 
 
-
 
NC_005945  BAS3428  N-acetylmuramoyl-L-alanine amidase  31.11 
 
 		 150 aa  63.9  0.0000000006  Bacillus anthracis str. Sterne  Bacteria  normal  1  n/a   
 
 
-
 
NC_006274  BCZK3340  N-acetylmuramoyl-L-alanine amidase  31.85 
 
 		 152 aa  63.5  0.000000001  Bacillus cereus E33L  Bacteria  normal  1  n/a   
 
 
-
 
NC_011773  BCAH820_3648  putative N-acetylmuramoyl-L-alanine amidase  31.11 
 
 		 150 aa  62.4  0.000000002  Bacillus cereus AH820  Bacteria  n/a    normal  1 
 
 
-
 
NC_005957  BT9727_3389  N-acetylmuramoyl-L-alanine amidase  31.11 
 
 		 152 aa  62.4  0.000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0561834  n/a   
 
 
-
 
NC_013502  Rmar_2816  N-acetylmuramoyl-L-alanine amidase family 2  33.33 
 
 		 542 aa  60.5  0.000000008  Rhodothermus marinus DSM 4252  Bacteria  normal  1  n/a   
 
 
-
 
NC_008554  Sfum_3764  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  33.11 
 
 		 288 aa  59.7  0.00000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.0204504  normal  1 
 
 
-
 
NC_007575  Suden_1789  negative regulator of AmpC, AmpD  34.34 
 
 		 219 aa  54.3  0.0000005  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  1  n/a   
 
 
-
 
NC_014165  Tbis_1925  N-acetylmuramyl-L-alanine amidase  34.03 
 
 		 289 aa  53.5  0.000001  Thermobispora bispora DSM 43833  Bacteria  normal  0.0536095  normal  0.343359 
 
 
-
 
NC_007492  Pfl01_3188  animal peptidoglycan recognition protein PGRP  29.84 
 
 		 240 aa  51.6  0.000004  Pseudomonas fluorescens Pf0-1  Bacteria  hitchhiker  0.0000281584  normal  0.0104893 
 
 
-
 
NC_014211  Ndas_5184  N-acetylmuramoyl-L-alanine amidase family 2  35 
 
 		 279 aa  50.8  0.000006  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009973  Haur_5193  N-acetylmuramoyl-L-alanine amidase  32.37 
 
 		 356 aa  49.7  0.00001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.00000362844  n/a   
 
 
-
 
NC_014210  Ndas_2393  N-acetylmuramoyl-L-alanine amidase family 2  32.86 
 
 		 268 aa  49.7  0.00001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.594471  normal  1 
 
 
-
 
NC_010718  Nther_1862  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  37.93 
 
 		 219 aa  48.1  0.00004  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.774092  normal  0.108984 
 
 
-
 
NC_004578  PSPTO_4634  N-acetylmuramoyl-L-alanine amidase, putative  30.65 
 
 		 237 aa  47.4  0.00007  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.673523  n/a   
 
 
-
 
NC_014210  Ndas_2719  N-acetylmuramoyl-L-alanine amidase family 2  32.86 
 
 		 274 aa  46.6  0.0001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  0.670474 
 
 
-
 
NC_014210  Ndas_4840  N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD  30 
 
 		 277 aa  46.2  0.0002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013510  Tcur_3174  N-acetylmuramoyl-L-alanine amidase family 2  32.11 
 
 		 694 aa  45.8  0.0002  Thermomonospora curvata DSM 43183  Bacteria  normal  0.15405  n/a   
 
 
-
 
NC_007908  Rfer_3346  N-acetyl-anhydromuranmyl-L-alanine amidase  26.21 
 
 		 203 aa  44.7  0.0005  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_013510  Tcur_4945  N-acetylmuramoyl-L-alanine amidase family 2  29.79 
 
 		 273 aa  43.9  0.0007  Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
-
 
NC_013739  Cwoe_0099  N-acetylmuramoyl-L-alanine amidase family 2  38.27 
 
 		 552 aa  43.9  0.0007  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013947  Snas_1930  N-acetylmuramoyl-L-alanine amidase family 2  33.33 
 
 		 223 aa  43.1  0.001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008578  Acel_0417  N-acetylmuramoyl-L-alanine amidase  39.29 
 
 		 905 aa  43.1  0.001  Acidothermus cellulolyticus 11B  Bacteria  normal  0.46141  normal  1 
 
 
-
 
NC_014158  Tpau_0270  N-acetylmuramoyl-L-alanine amidase family 2  27.01 
 
 		 364 aa  42.7  0.002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.185404  n/a   
 
 
-
 
NC_013159  Svir_35340  negative regulator of beta-lactamase expression  29.86 
 
 		 311 aa  42.4  0.002  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007298  Daro_0663  N-acetyl-anhydromuranmyl-L-alanine amidase  34.83 
 
 		 188 aa  42  0.003  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009997  Sbal195_4057  N-acetyl-anhydromuranmyl-L-alanine amidase  32.74 
 
 		 187 aa  41.2  0.005  Shewanella baltica OS195  Bacteria  hitchhiker  0.00018717  normal  0.269643 
 
 
-
 
NC_009972  Haur_2152  N-acetylmuramoyl-L-alanine amidase  30.25 
 
 		 356 aa  40.8  0.006  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.0000936807  n/a   
 
 
-
 
NC_013947  Snas_1928  N-acetylmuramyl-L-alanine amidase negative regulator of AmpC, AmpD  28.87 
 
 		 391 aa  40.8  0.007  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013510  Tcur_3907  N-acetylmuramoyl-L-alanine amidase family 2  30.77 
 
 		 648 aa  40.4  0.008  Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
-
 
NC_009664  Krad_3877  LGFP repeat protein  37.7 
 
 		 654 aa  40.4  0.008  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.200487  normal  0.0193324 
 
 
-
 
NC_014158  Tpau_0455  N-acetylmuramoyl-L-alanine amidase family 2  27.01 
 
 		 357 aa  40.4  0.009  Tsukamurella paurometabola DSM 20162  Bacteria  normal  1  n/a   
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>