Gene Rfer_3346 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_3346 
Symbol 
ID3963045 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand+ 
Start bp3714777 
End bp3715388 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content58% 
IMG OID637918166 
ProductN-acetyl-anhydromuranmyl-L-alanine amidase 
Protein accessionYP_524586 
Protein GI89902115 
COG category[V] Defense mechanisms 
COG ID[COG3023] Negative regulator of beta-lactamase expression 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTCCCT TTAAGGCACA GGACGATTCG CCGCTTTGGC GCGAGGGTTG GTACCAATTT 
GCGGGTCGAC TGACCTCACC CAATTACGGC CCCCGGCCGA GTCAGGCCGA GATTGACCTG 
ATCGTGCTGC ATTGCATCAG TCTGCCCCCT GGCCAGTATG GCGGTGACGA GGTACAGCGC 
CTGTTTACCA ACCAGCTGGA CTGGAACGCA CATCCCTACT TCAAACGGAT CGAGGGCATG 
CAGGTGTCGT CCCACTTTTA CATCCGTCGC CAGGGTGAAC TGCAGCAGTT TGTCAGTTGC 
GACCAGCGCG CCTGGCATGC GGGCGTGTCG AGTTACCGGG GACGCAGCGA TTGCAATAAC 
AACGCCATTG GCATCGAGCT GGAGGGGGTT GACGACGCCC CCTTCGATGA ACGTCAATAC 
GAAACACTGG TGAGCCTGTG CGCGGCCATT CTCCAACGCT ACCCCATCAC ACAGGTTGCC 
GGACACGAAC ATATCGCACC AGGACGGAAA ACCGACCCGG GAAGTGGCTT CGACTGGGCC 
CTGCTGCAGC AGGCGTTGGG CTTGTCCTCC AAATTTTTCC CAGCCAGTGT TTTACTGAAA 
AGTCTTTGCT GA
 
Protein sequence
MSPFKAQDDS PLWREGWYQF AGRLTSPNYG PRPSQAEIDL IVLHCISLPP GQYGGDEVQR 
LFTNQLDWNA HPYFKRIEGM QVSSHFYIRR QGELQQFVSC DQRAWHAGVS SYRGRSDCNN 
NAIGIELEGV DDAPFDERQY ETLVSLCAAI LQRYPITQVA GHEHIAPGRK TDPGSGFDWA 
LLQQALGLSS KFFPASVLLK SLC