More than 300 homologs were found in PanDaTox collection
for query gene Dshi_1004 on replicon NC_009952
Organism: Dinoroseobacter shibae DFL 12



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009952  Dshi_1004  acyl-CoA dehydrogenase domain protein  100 
 
 
405 aa  825    Dinoroseobacter shibae DFL 12  Bacteria  normal  0.211368  normal 
 
 
-
 
NC_011894  Mnod_4672  acyl-CoA dehydrogenase domain protein  75.81 
 
 
409 aa  615  1e-175  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_4773  acyl-CoA dehydrogenase domain-containing protein  75.25 
 
 
401 aa  602  1.0000000000000001e-171  Methylobacterium sp. 4-46  Bacteria  normal  0.999666  normal  0.360352 
 
 
-
 
NC_010505  Mrad2831_4450  acyl-CoA dehydrogenase domain-containing protein  74.19 
 
 
401 aa  597  1e-169  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_0183  acyl-CoA dehydrogenase domain-containing protein  69.4 
 
 
404 aa  557  1e-157  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.292913 
 
 
-
 
NC_008463  PA14_35970  Acyl-CoA dehydrogenase  44.87 
 
 
390 aa  318  9e-86  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0367152  hitchhiker  0.0000000000000220506 
 
 
-
 
NC_002947  PP_2793  acyl-CoA dehydrogenase family protein  44.62 
 
 
390 aa  315  6e-85  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_2503  acyl-CoA dehydrogenase domain-containing protein  45.08 
 
 
396 aa  314  1.9999999999999998e-84  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0689406  normal 
 
 
-
 
NC_013440  Hoch_1654  acyl-CoA dehydrogenase domain protein  42.68 
 
 
392 aa  304  2.0000000000000002e-81  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_1814  acyl-CoA dehydrogenase-like protein  43.01 
 
 
391 aa  301  2e-80  Cupriavidus metallidurans CH34  Bacteria  normal  0.0270367  normal  0.034848 
 
 
-
 
NC_011992  Dtpsy_0224  acyl-CoA dehydrogenase domain protein  43.04 
 
 
396 aa  300  3e-80  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_0230  acyl-CoA dehydrogenase domain-containing protein  43.04 
 
 
399 aa  299  5e-80  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_0013  acyl-CoA dehydrogenase domain-containing protein  41.79 
 
 
415 aa  295  1e-78  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_4519  acyl-CoA dehydrogenase domain protein  42.64 
 
 
403 aa  285  8e-76  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_012792  Vapar_6219  acyl-CoA dehydrogenase domain protein  43.34 
 
 
387 aa  281  1e-74  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_1921  acyl-CoA dehydrogenase domain-containing protein  39.05 
 
 
400 aa  278  9e-74  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_1560  acyl-CoA dehydrogenase domain-containing protein  38.64 
 
 
405 aa  278  1e-73  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_0834  acyl-CoA dehydrogenase domain protein  43.49 
 
 
401 aa  273  3e-72  Conexibacter woesei DSM 14684  Bacteria  normal  0.850289  normal  0.956057 
 
 
-
 
NC_012029  Hlac_0221  acyl-CoA dehydrogenase domain protein  41.55 
 
 
406 aa  272  6e-72  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  0.338225  normal  0.0253718 
 
 
-
 
NC_014212  Mesil_2292  Butyryl-CoA dehydrogenase  41.93 
 
 
398 aa  271  2e-71  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_2090  acyl-CoA dehydrogenase domain protein  39.44 
 
 
407 aa  266  5.999999999999999e-70  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0739056  n/a   
 
 
-
 
NC_007492  Pfl01_3651  Acyl-CoA dehydrogenase-like  38.83 
 
 
409 aa  263  3e-69  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.0710553 
 
 
-
 
NC_013743  Htur_2346  acyl-CoA dehydrogenase domain protein  36.36 
 
 
416 aa  263  4.999999999999999e-69  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_009512  Pput_3258  acyl-CoA dehydrogenase domain-containing protein  38.32 
 
 
409 aa  262  6e-69  Pseudomonas putida F1  Bacteria  normal  normal  0.384897 
 
 
-
 
NC_004578  PSPTO_2745  acyl-CoA dehydrogenase family protein  38.83 
 
 
409 aa  262  8e-69  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_2113  acyl-CoA dehydrogenase domain-containing protein  39.8 
 
 
426 aa  261  1e-68  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_1096  acyl-CoA dehydrogenase domain-containing protein  41.27 
 
 
397 aa  261  1e-68  Meiothermus ruber DSM 1279  Bacteria  normal  0.7199  normal  0.106826 
 
 
-
 
NC_009921  Franean1_1886  acyl-CoA dehydrogenase domain-containing protein  39.84 
 
 
398 aa  261  1e-68  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2437  acyl-CoA dehydrogenase domain-containing protein  38.07 
 
 
414 aa  261  2e-68  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2860  acyl-CoA dehydrogenase domain-containing protein  39.55 
 
 
432 aa  261  2e-68  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_2082  acyl-CoA dehydrogenase domain-containing protein  37.82 
 
 
409 aa  260  3e-68  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_2686  putative acyl-CoA dehydrogenase  38.32 
 
 
409 aa  260  4e-68  Pseudomonas aeruginosa PA7  Bacteria  normal  0.136892  n/a   
 
 
-
 
NC_007005  Psyr_2474  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  38.07 
 
 
409 aa  260  4e-68  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.159264  normal  0.108403 
 
 
-
 
NC_009921  Franean1_3591  acyl-CoA dehydrogenase domain-containing protein  39.43 
 
 
409 aa  260  4e-68  Frankia sp. EAN1pec  Bacteria  normal  normal  0.969674 
 
 
-
 
NC_014165  Tbis_2518  acyl-CoA dehydrogenase domain-containing protein  37.82 
 
 
426 aa  259  6e-68  Thermobispora bispora DSM 43833  Bacteria  normal  0.0714534  normal 
 
 
-
 
NC_008463  PA14_31580  putative acyl-CoA dehydrogenase  38.07 
 
 
409 aa  259  6e-68  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.00724554 
 
 
-
 
NC_013510  Tcur_4020  acyl-CoA dehydrogenase domain protein  39.03 
 
 
402 aa  258  2e-67  Thermomonospora curvata DSM 43183  Bacteria  decreased coverage  0.00340941  n/a   
 
 
-
 
NC_007333  Tfu_2485  acyl-CoA dehydrogenase  38.29 
 
 
398 aa  256  4e-67  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01061  putative acyl-CoA dehydrogenase  37.41 
 
 
411 aa  256  4e-67  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_1479  acyl-CoA dehydrogenase domain-containing protein  39.84 
 
 
387 aa  256  5e-67  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_2207  acyl-CoA dehydrogenase domain protein  39.43 
 
 
397 aa  256  6e-67  Rhodothermus marinus DSM 4252  Bacteria  normal  0.420228  n/a   
 
 
-
 
NC_008148  Rxyl_2418  acyl-CoA dehydrogenase-like protein  36.54 
 
 
412 aa  256  6e-67  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.185617  n/a   
 
 
-
 
NC_013743  Htur_0944  acyl-CoA dehydrogenase domain protein  37.53 
 
 
430 aa  255  9e-67  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_007348  Reut_B4628  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  40.75 
 
 
397 aa  254  1.0000000000000001e-66  Ralstonia eutropha JMP134  Bacteria  normal  0.383414  n/a   
 
 
-
 
NC_009439  Pmen_2439  acyl-CoA dehydrogenase domain-containing protein  38.07 
 
 
409 aa  255  1.0000000000000001e-66  Pseudomonas mendocina ymp  Bacteria  normal  0.987595  normal 
 
 
-
 
NC_012791  Vapar_2628  acyl-CoA dehydrogenase domain protein  37.62 
 
 
423 aa  254  2.0000000000000002e-66  Variovorax paradoxus S110  Bacteria  normal  0.122301  n/a   
 
 
-
 
NC_007908  Rfer_3689  acyl-CoA dehydrogenase-like  36.57 
 
 
424 aa  254  3e-66  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013922  Nmag_3408  acyl-CoA dehydrogenase domain protein  36.32 
 
 
416 aa  254  3e-66  Natrialba magadii ATCC 43099  Archaea  normal  0.256536  n/a   
 
 
-
 
NC_007974  Rmet_4613  acyl-CoA dehydrogenase-like protein  40.75 
 
 
397 aa  253  4.0000000000000004e-66  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_0158  acyl-CoA dehydrogenase domain protein  36.48 
 
 
405 aa  253  4.0000000000000004e-66  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  hitchhiker  0.00409231  n/a   
 
 
-
 
NC_007925  RPC_4699  acyl-CoA dehydrogenase-like  38.24 
 
 
422 aa  253  5.000000000000001e-66  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1435  acyl-CoA dehydrogenase family protein  38.35 
 
 
400 aa  253  6e-66  Streptosporangium roseum DSM 43021  Bacteria  decreased coverage  0.00297714  normal  0.111309 
 
 
-
 
NC_013739  Cwoe_4008  acyl-CoA dehydrogenase domain protein  38.01 
 
 
402 aa  252  9.000000000000001e-66  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_3063  acyl-CoA dehydrogenase domain-containing protein  36.8 
 
 
409 aa  252  9.000000000000001e-66  Pseudomonas putida W619  Bacteria  normal  0.0887975  normal 
 
 
-
 
NC_010515  Bcenmc03_4335  acyl-CoA dehydrogenase domain-containing protein  37.66 
 
 
414 aa  251  1e-65  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0735838  normal  0.987341 
 
 
-
 
NC_007651  BTH_I1083  acyl-CoA dehydrogenase domain-containing protein  38.86 
 
 
408 aa  250  2e-65  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_1690  acyl-CoA dehydrogenase domain protein  37.15 
 
 
428 aa  250  3e-65  Gordonia bronchialis DSM 43247  Bacteria  normal  0.505537  n/a   
 
 
-
 
NC_008752  Aave_3077  acyl-CoA dehydrogenase domain-containing protein  36.63 
 
 
424 aa  250  4e-65  Acidovorax citrulli AAC00-1  Bacteria  normal  0.765136  normal  0.228122 
 
 
-
 
NC_008061  Bcen_5016  acyl-CoA dehydrogenase-like  37.66 
 
 
414 aa  250  4e-65  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.605306  n/a   
 
 
-
 
NC_008543  Bcen2424_5844  acyl-CoA dehydrogenase domain-containing protein  37.66 
 
 
414 aa  250  4e-65  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0983385  normal 
 
 
-
 
NC_008228  Patl_1812  acyl-CoA dehydrogenase-like  37.44 
 
 
408 aa  249  5e-65  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_4077  acyl-CoA dehydrogenase domain-containing protein  37.16 
 
 
420 aa  249  6e-65  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_3221  acyl-CoA dehydrogenase domain-containing protein  37.91 
 
 
414 aa  249  7e-65  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_3285  acyl-CoA dehydrogenase domain-containing protein  37.38 
 
 
424 aa  249  7e-65  Delftia acidovorans SPH-1  Bacteria  normal  0.64464  normal  0.6296 
 
 
-
 
NC_008740  Maqu_2205  acyl-CoA dehydrogenase domain-containing protein  38.04 
 
 
403 aa  249  8e-65  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007336  Reut_C6366  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  38.95 
 
 
398 aa  249  8e-65  Ralstonia eutropha JMP134  Bacteria  normal  0.390023  n/a   
 
 
-
 
NC_008345  Sfri_2069  acyl-CoA dehydrogenase domain-containing protein  36.67 
 
 
403 aa  249  9e-65  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_1151  acyl-CoA dehydrogenase domain protein  38.69 
 
 
402 aa  248  1e-64  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.73028  normal 
 
 
-
 
NC_009075  BURPS668_A2654  acyl-CoA dehydrogenase domain-containing protein  41.4 
 
 
410 aa  248  1e-64  Burkholderia pseudomallei 668  Bacteria  normal  0.798102  n/a   
 
 
-
 
NC_008835  BMA10229_1622  acyl-CoA dehydrogenase domain-containing protein  41.4 
 
 
410 aa  248  1e-64  Burkholderia mallei NCTC 10229  Bacteria  normal  0.778123  n/a   
 
 
-
 
NC_006349  BMAA0242  acyl-CoA dehydrogenase domain-containing protein  41.4 
 
 
410 aa  248  1e-64  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1425  acyl-CoA dehydrogenase domain-containing protein  41.4 
 
 
410 aa  248  1e-64  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5288  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  38.95 
 
 
398 aa  248  1e-64  Ralstonia eutropha JMP134  Bacteria  normal  0.334035  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0947  acyl-CoA dehydrogenase domain-containing protein  41.4 
 
 
410 aa  248  1e-64  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2516  acyl-CoA dehydrogenase domain-containing protein  41.4 
 
 
410 aa  248  1e-64  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0278  acyl-CoA dehydrogenase domain-containing protein  41.4 
 
 
410 aa  248  1e-64  Burkholderia mallei NCTC 10247  Bacteria  normal  0.880803  n/a   
 
 
-
 
NC_008391  Bamb_5081  acyl-CoA dehydrogenase domain-containing protein  37.66 
 
 
414 aa  248  2e-64  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II0520  acyl-CoA dehydrogenase domain-containing protein  40.89 
 
 
410 aa  247  3e-64  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_1945  acyl-CoA dehydrogenase domain protein  36.39 
 
 
424 aa  246  4e-64  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_0767  acyl-CoA dehydrogenase-like  38.13 
 
 
421 aa  246  4e-64  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B3035  Acyl-CoA dehydrogenase  37.41 
 
 
414 aa  246  6e-64  Burkholderia sp. 383  Bacteria  normal  0.0562026  normal  0.845573 
 
 
-
 
NC_013730  Slin_1392  acyl-CoA dehydrogenase domain protein  38.18 
 
 
424 aa  246  6.999999999999999e-64  Spirosoma linguale DSM 74  Bacteria  normal  0.671392  normal  0.19275 
 
 
-
 
NC_008782  Ajs_1777  acyl-CoA dehydrogenase domain-containing protein  36.39 
 
 
424 aa  245  8e-64  Acidovorax sp. JS42  Bacteria  normal  0.314845  normal 
 
 
-
 
NC_008726  Mvan_0116  acyl-CoA dehydrogenase domain-containing protein  37.44 
 
 
447 aa  245  9e-64  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_0734  acyl-CoA dehydrogenase domain-containing protein  36.93 
 
 
418 aa  245  9.999999999999999e-64  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.998726  normal 
 
 
-
 
NC_014165  Tbis_2866  acyl-CoA dehydrogenase domain-containing protein  37.89 
 
 
401 aa  245  9.999999999999999e-64  Thermobispora bispora DSM 43833  Bacteria  normal  0.511671  normal 
 
 
-
 
NC_009074  BURPS668_1313  acyl-CoA dehydrogenase domain-containing protein  37.91 
 
 
408 aa  244  1.9999999999999999e-63  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_1459  acyl-CoA dehydrogenase domain-containing protein  37.91 
 
 
408 aa  244  1.9999999999999999e-63  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_1322  acyl-CoA dehydrogenase domain-containing protein  37.91 
 
 
408 aa  244  1.9999999999999999e-63  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_4575  acyl-CoA dehydrogenase domain protein  37.06 
 
 
407 aa  244  1.9999999999999999e-63  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.879339 
 
 
-
 
NC_009953  Sare_1511  acyl-CoA dehydrogenase domain-containing protein  39.04 
 
 
403 aa  244  1.9999999999999999e-63  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.000569336 
 
 
-
 
NC_008786  Veis_4306  acyl-CoA dehydrogenase domain-containing protein  36.88 
 
 
424 aa  243  3e-63  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.530471  normal 
 
 
-
 
NC_007908  Rfer_1019  acyl-CoA dehydrogenase-like  35.61 
 
 
417 aa  243  3.9999999999999997e-63  Rhodoferax ferrireducens T118  Bacteria  normal  0.530508  n/a   
 
 
-
 
NC_009080  BMA10247_0436  acyl-CoA dehydrogenase domain-containing protein  37.66 
 
 
408 aa  243  5e-63  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA1806  acyl-CoA dehydrogenase domain-containing protein  37.66 
 
 
408 aa  243  5e-63  Burkholderia mallei ATCC 23344  Bacteria  normal  0.0379201  n/a   
 
 
-
 
NC_008836  BMA10229_A0715  acyl-CoA dehydrogenase domain-containing protein  37.66 
 
 
408 aa  243  5e-63  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_3461  acyl-CoA dehydrogenase domain protein  38.13 
 
 
402 aa  243  5e-63  Actinosynnema mirum DSM 43827  Bacteria  normal  0.274426  n/a   
 
 
-
 
NC_010623  Bphy_5044  acyl-CoA dehydrogenase domain-containing protein  36.48 
 
 
416 aa  243  5e-63  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008785  BMASAVP1_A1153  acyl-CoA dehydrogenase domain-containing protein  37.66 
 
 
408 aa  243  5e-63  Burkholderia mallei SAVP1  Bacteria  normal  0.0557082  n/a   
 
 
-
 
NC_012793  GWCH70_0925  acyl-CoA dehydrogenase domain protein  36.57 
 
 
401 aa  242  7e-63  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
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