112 homologs were found in PanDaTox collection
for query gene Tbd_0493 on replicon NC_007404
Organism: Thiobacillus denitrificans ATCC 25259



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007404  Tbd_0493  multisubunit Na+/H+ antiporter, subunit F  100 
 
 
89 aa  172  1.9999999999999998e-42  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_0059  putative monovalent cation/H+ antiporter subunit F  68.54 
 
 
89 aa  120  8e-27  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_0578  putative monovalent cation/H+ antiporter subunit F  65.17 
 
 
89 aa  119  9.999999999999999e-27  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.00573992  decreased coverage  0.00947424 
 
 
-
 
NC_013173  Dbac_2488  multiple resistance and pH regulation protein F  68.54 
 
 
89 aa  117  3.9999999999999996e-26  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_3814  putative monovalent cation/H+ antiporter subunit F  59.55 
 
 
89 aa  116  9.999999999999999e-26  Colwellia psychrerythraea 34H  Bacteria  normal  0.345278  n/a   
 
 
-
 
NC_007963  Csal_0899  multiple resistance and pH regulation protein F  62.92 
 
 
89 aa  109  1.0000000000000001e-23  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.857013  n/a   
 
 
-
 
NC_008709  Ping_1354  monovalent cation/proton antiporter, pH regulation subunit F  58.43 
 
 
89 aa  109  1.0000000000000001e-23  Psychromonas ingrahamii 37  Bacteria  normal  0.258998  normal 
 
 
-
 
NC_008740  Maqu_2853  multiple resistance and pH regulation protein F  59.55 
 
 
89 aa  105  1e-22  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3986  putative monovalent cation/H+ antiporter subunit F  57.3 
 
 
89 aa  101  4e-21  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A1682  putative monovalent cation/H+ antiporter subunit F  58.43 
 
 
90 aa  100  7e-21  Ralstonia eutropha JMP134  Bacteria  normal  0.145705  n/a   
 
 
-
 
NC_012560  Avin_19570  sodium hydrogen antiporter subunitF, ShaF  57.3 
 
 
89 aa  96.3  1e-19  Azotobacter vinelandii DJ  Bacteria  normal  0.256992  n/a   
 
 
-
 
NC_007802  Jann_3719  multiple resistance and pH regulation protein F  55.06 
 
 
89 aa  94.7  3e-19  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009956  Dshi_3809  multiple resistance and pH regulation protein F  62.16 
 
 
89 aa  95.1  3e-19  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.332403 
 
 
-
 
NC_011004  Rpal_3132  putative monovalent cation/H+ antiporter subunit F  61.76 
 
 
93 aa  94.4  4e-19  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_1126  multiple resistance and pH regulation protein F  56.18 
 
 
102 aa  94.4  4e-19  Halothiobacillus neapolitanus c2  Bacteria  hitchhiker  0.00913548  n/a   
 
 
-
 
NC_009636  Smed_2810  putative monovalent cation/H+ antiporter subunit F  50 
 
 
93 aa  94  6e-19  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.482202 
 
 
-
 
NC_009439  Pmen_1445  multiple resistance and pH regulation protein F  52.81 
 
 
89 aa  93.6  7e-19  Pseudomonas mendocina ymp  Bacteria  normal  0.0244113  normal 
 
 
-
 
NC_007778  RPB_0152  putative monovalent cation/H+ antiporter subunit F  52.81 
 
 
89 aa  93.6  8e-19  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_2658  putative monovalent cation/H+ antiporter subunit F  52.81 
 
 
92 aa  92.8  1e-18  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_1006  putative monovalent cation/H+ antiporter subunit F  52.81 
 
 
92 aa  92.8  1e-18  Nitrobacter hamburgensis X14  Bacteria  normal  0.762364  n/a   
 
 
-
 
NC_009656  PSPA7_4320  putative monovalent cation/H+ antiporter subunit F  59.55 
 
 
89 aa  90.5  7e-18  Pseudomonas aeruginosa PA7  Bacteria  normal  0.409592  n/a   
 
 
-
 
NC_008686  Pden_0701  multiple resistance and pH regulation protein F  49.44 
 
 
89 aa  89.7  1e-17  Paracoccus denitrificans PD1222  Bacteria  normal  0.390785  normal 
 
 
-
 
NC_011662  Tmz1t_2441  multiple resistance and pH regulation protein F  48.31 
 
 
94 aa  89.4  1e-17  Thauera sp. MZ1T  Bacteria  normal  0.770309  n/a   
 
 
-
 
NC_007614  Nmul_A1587  putative monovalent cation/H+ antiporter subunit F  48.91 
 
 
93 aa  89  2e-17  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_1520  multiple resistance and pH regulation protein F  48.86 
 
 
92 aa  88.2  3e-17  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0106021  normal 
 
 
-
 
NC_008044  TM1040_1542  putative monovalent cation/H+ antiporter subunit F  48.15 
 
 
89 aa  87.8  4e-17  Ruegeria sp. TM1040  Bacteria  normal  normal  0.0184419 
 
 
-
 
NC_011988  Avi_5264  PH Adaption potassium efflux system  58.21 
 
 
93 aa  87.8  4e-17  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_04213  putative monovalent cation/H+ antiporter subunit F  52.27 
 
 
94 aa  87.4  5e-17  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_5152  multiple resistance and pH regulation protein F  45.45 
 
 
94 aa  87.4  6e-17  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_2478  multiple resistance and pH regulation protein F  48.86 
 
 
93 aa  86.7  1e-16  Acidovorax sp. JS42  Bacteria  normal  0.648417  normal  0.0636047 
 
 
-
 
NC_011992  Dtpsy_1382  multiple resistance and pH regulation protein F  48.86 
 
 
93 aa  86.7  1e-16  Acidovorax ebreus TPSY  Bacteria  normal  0.393681  n/a   
 
 
-
 
NC_008463  PA14_50690  putative monovalent cation/H+ antiporter subunit F  69.23 
 
 
85 aa  85.9  2e-16  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.00854292 
 
 
-
 
NC_010172  Mext_4612  multiple resistance and pH regulation protein F  44.32 
 
 
94 aa  85.9  2e-16  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0110721 
 
 
-
 
NC_011757  Mchl_5077  multiple resistance and pH regulation protein F  44.32 
 
 
94 aa  85.9  2e-16  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.734498  normal 
 
 
-
 
NC_011071  Smal_3733  putative monovalent cation/H+ antiporter subunit F  49.44 
 
 
94 aa  84.7  3e-16  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_3293  multiple resistance and pH regulation protein F  44.32 
 
 
96 aa  84.3  5e-16  Acidovorax citrulli AAC00-1  Bacteria  normal  0.3108  normal 
 
 
-
 
NC_004578  PSPTO_3475  potassium efflux system protein PhaF  47.19 
 
 
92 aa  82.8  0.000000000000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3256  putative monovalent cation/H+ antiporter subunit F  46.07 
 
 
92 aa  82  0.000000000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.111199  normal 
 
 
-
 
NC_007493  RSP_0996  pH adaption potassium efflux system, PhaF subunit  51.69 
 
 
89 aa  82  0.000000000000002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.0786377  n/a   
 
 
-
 
NC_007925  RPC_3853  putative monovalent cation/H+ antiporter subunit F  47.19 
 
 
89 aa  82.8  0.000000000000002  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_2656  multiple resistance and pH regulation protein F  51.69 
 
 
89 aa  82  0.000000000000002  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009050  Rsph17029_3445  putative monovalent cation/H+ antiporter subunit F  44.94 
 
 
93 aa  81.3  0.000000000000005  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.735692  normal  0.139812 
 
 
-
 
NC_009429  Rsph17025_3621  putative monovalent cation/H+ antiporter subunit F  42.7 
 
 
93 aa  80.5  0.000000000000006  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0308607  normal 
 
 
-
 
NC_012791  Vapar_1601  multiple resistance and pH regulation protein F  52.24 
 
 
92 aa  80.5  0.000000000000008  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0228  multiple resistance and pH regulation protein F  50.56 
 
 
89 aa  80.1  0.000000000000009  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0106096  normal 
 
 
-
 
NC_007492  Pfl01_3314  putative monovalent cation/H+ antiporter subunit F  46.07 
 
 
92 aa  79.7  0.00000000000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007494  RSP_3711  putative monovalent cation/H+ antiporter subunit F  44.94 
 
 
93 aa  79.7  0.00000000000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.546429  n/a   
 
 
-
 
NC_008686  Pden_1285  putative monovalent cation/H+ antiporter subunit F  50 
 
 
93 aa  79  0.00000000000002  Paracoccus denitrificans PD1222  Bacteria  normal  0.399019  normal 
 
 
-
 
NC_010501  PputW619_3447  putative monovalent cation/H+ antiporter subunit F  50 
 
 
92 aa  77.4  0.00000000000005  Pseudomonas putida W619  Bacteria  normal  0.810959  normal  0.413085 
 
 
-
 
NC_008783  BARBAKC583_0034  putative monovalent cation/H+ antiporter subunit F  48.05 
 
 
93 aa  77.4  0.00000000000007  Bartonella bacilliformis KC583  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_4733  multiple resistance and pH regulation protein F  43.68 
 
 
92 aa  77  0.00000000000008  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.74985 
 
 
-
 
NC_002947  PP_2226  putative monovalent cation/H+ antiporter subunit F  50 
 
 
92 aa  77  0.00000000000009  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_3514  putative monovalent cation/H+ antiporter subunit F  50 
 
 
92 aa  76.3  0.0000000000001  Pseudomonas putida F1  Bacteria  normal  hitchhiker  0.00558279 
 
 
-
 
NC_010322  PputGB1_1849  putative monovalent cation/H+ antiporter subunit F  50 
 
 
92 aa  76.3  0.0000000000001  Pseudomonas putida GB-1  Bacteria  normal  0.689524  normal  0.0371902 
 
 
-
 
NC_008786  Veis_3905  multiple resistance and pH regulation protein F  43.18 
 
 
92 aa  75.1  0.0000000000003  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.0617372 
 
 
-
 
NC_011662  Tmz1t_1104  multiple resistance and pH regulation protein F  55.56 
 
 
89 aa  75.5  0.0000000000003  Thauera sp. MZ1T  Bacteria  normal  0.0102977  n/a   
 
 
-
 
NC_007958  RPD_0672  putative monovalent cation/H+ antiporter subunit F  47.19 
 
 
89 aa  73.6  0.0000000000009  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA0504  putative monovalent cation/H+ antiporter subunit F  55.41 
 
 
93 aa  72  0.000000000002  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0439  putative monovalent cation/H+ antiporter subunit F  55.41 
 
 
93 aa  72  0.000000000002  Brucella ovis ATCC 25840  Bacteria  normal  0.324734  n/a   
 
 
-
 
NC_009668  Oant_3535  putative monovalent cation/H+ antiporter subunit F  56.76 
 
 
93 aa  69.7  0.00000000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.480103  n/a   
 
 
-
 
NC_013926  Aboo_0665  multiple resistance and pH regulation protein F  42.42 
 
 
85 aa  58.5  0.00000003  Aciduliprofundum boonei T469  Archaea  normal  n/a   
 
 
-
 
NC_013158  Huta_0565  multiple resistance and pH regulation protein F  33.82 
 
 
96 aa  57.8  0.00000005  Halorhabdus utahensis DSM 12940  Archaea  normal  0.4041  n/a   
 
 
-
 
NC_012029  Hlac_0488  multiple resistance and pH regulation protein F  36.9 
 
 
97 aa  57.4  0.00000006  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  normal  0.675094 
 
 
-
 
NC_013743  Htur_2714  multiple resistance and pH regulation protein F  32.58 
 
 
99 aa  57  0.00000007  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_009952  Dshi_0733  multiple resistance and pH regulation protein F  37.18 
 
 
118 aa  57  0.00000008  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.130974  normal 
 
 
-
 
NC_011830  Dhaf_1158  multiple resistance and pH regulation protein F  37.14 
 
 
98 aa  57  0.00000008  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2095  multiple resistance and pH regulation protein F  34.12 
 
 
90 aa  56.6  0.0000001  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.801708  normal  0.210838 
 
 
-
 
NC_013926  Aboo_0385  multiple resistance and pH regulation protein F  44 
 
 
88 aa  55.1  0.0000003  Aciduliprofundum boonei T469  Archaea  normal  0.0828098  n/a   
 
 
-
 
NC_008740  Maqu_2860  multiple resistance and pH regulation protein F  31.03 
 
 
90 aa  53.9  0.0000007  Marinobacter aquaeolei VT8  Bacteria  normal  0.139125  n/a   
 
 
-
 
NC_002939  GSU2339  putative monovalent cation/H+ antiporter subunit F  40.3 
 
 
91 aa  53.5  0.0000009  Geobacter sulfurreducens PCA  Bacteria  normal  0.962701  n/a   
 
 
-
 
NC_008609  Ppro_3223  putative monovalent cation/H+ antiporter subunit F  35.82 
 
 
91 aa  53.1  0.000001  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2097  multiple resistance and pH regulation protein F  34.12 
 
 
87 aa  53.1  0.000001  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2927  multiple resistance and pH regulation protein F  36.47 
 
 
87 aa  52  0.000003  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00000965772  normal  0.611551 
 
 
-
 
NC_007796  Mhun_2580  putative monovalent cation/H+ antiporter subunit F  34.92 
 
 
85 aa  51.2  0.000005  Methanospirillum hungatei JF-1  Archaea  normal  normal 
 
 
-
 
NC_010003  Pmob_0896  multiple resistance and pH regulation protein F  39.34 
 
 
65 aa  50.8  0.000006  Petrotoga mobilis SJ95  Bacteria  normal  0.297824  n/a   
 
 
-
 
NC_010803  Clim_0982  multiple resistance and pH regulation protein F  35.38 
 
 
90 aa  50.8  0.000006  Chlorobium limicola DSM 245  Bacteria  normal  0.739743  n/a   
 
 
-
 
NC_010831  Cphamn1_0079  multiple resistance and pH regulation protein F  37.5 
 
 
91 aa  50.8  0.000006  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_013922  Nmag_3452  multiple resistance and pH regulation protein F  34.78 
 
 
93 aa  50.4  0.000007  Natrialba magadii ATCC 43099  Archaea  normal  0.167745  n/a   
 
 
-
 
NC_007802  Jann_3690  multiple resistance and pH regulation protein F  32.94 
 
 
107 aa  50.1  0.000009  Jannaschia sp. CCS1  Bacteria  normal  normal  0.973299 
 
 
-
 
NC_011059  Paes_0099  multiple resistance and pH regulation protein F  37.5 
 
 
90 aa  50.1  0.00001  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_0879  putative monovalent cation/H+ antiporter subunit F  36.23 
 
 
116 aa  49.7  0.00001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  hitchhiker  0.00982664  normal 
 
 
-
 
NC_012793  GWCH70_2869  multiple resistance and pH regulation protein F  33.82 
 
 
93 aa  50.1  0.00001  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_0869  putative monovalent cation/H+ antiporter subunit F  33.82 
 
 
111 aa  49.3  0.00002  Chelativorans sp. BNC1  Bacteria  normal  0.0662572  n/a   
 
 
-
 
NC_013457  VEA_000414  Na(+) H(+) antiporter subunit F  28.92 
 
 
92 aa  49.3  0.00002  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_1747  multiple resistance and pH regulation protein F  32 
 
 
95 aa  48.9  0.00002  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_1612  putative monovalent cation/H+ antiporter subunit F  38.1 
 
 
82 aa  48.9  0.00002  Thermotoga sp. RQ2  Bacteria  decreased coverage  0.000561435  n/a   
 
 
-
 
NC_013521  Sked_26970  multisubunit Na+/H+ antiporter, MnhF subunit  30.12 
 
 
85 aa  48.5  0.00003  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.44503 
 
 
-
 
NC_009767  Rcas_1773  multiple resistance and pH regulation protein F  34.25 
 
 
87 aa  48.9  0.00003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_1005  putative monovalent cation/H+ antiporter subunit F  33.78 
 
 
117 aa  48.5  0.00003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  hitchhiker  0.00000446715  normal 
 
 
-
 
NC_009456  VC0395_1125  putative monovalent cation/H+ antiporter subunit F  30.38 
 
 
103 aa  48.1  0.00004  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000095206  n/a   
 
 
-
 
NC_013946  Mrub_0865  multiple resistance and pH regulation protein F  32.81 
 
 
88 aa  47.8  0.00005  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.717084 
 
 
-
 
NC_013747  Htur_5158  multiple resistance and pH regulation protein F  33.33 
 
 
93 aa  47  0.00008  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.716079  n/a   
 
 
-
 
NC_007955  Mbur_0137  putative monovalent cation/H+ antiporter subunit F  37.31 
 
 
88 aa  46.6  0.0001  Methanococcoides burtonii DSM 6242  Archaea  normal  0.911502  n/a   
 
 
-
 
NC_008576  Mmc1_2215  multiple resistance and pH regulation protein F  32.79 
 
 
86 aa  46.6  0.0001  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.0688335 
 
 
-
 
NC_009616  Tmel_1211  putative monovalent cation/H+ antiporter subunit F  33.33 
 
 
85 aa  46.2  0.0001  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_0612  putative monovalent cation/H+ antiporter subunit F  33.85 
 
 
128 aa  46.2  0.0001  Sinorhizobium medicae WSM419  Bacteria  normal  0.716984  normal 
 
 
-
 
NC_011662  Tmz1t_1108  multiple resistance and pH regulation protein F  37.74 
 
 
139 aa  46.2  0.0002  Thauera sp. MZ1T  Bacteria  normal  0.269645  n/a   
 
 
-
 
NC_012803  Mlut_11090  multisubunit Na+/H+ antiporter, MnhF subunit  32.5 
 
 
94 aa  45.4  0.0002  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0753  multiple resistance and pH regulation protein F  28.24 
 
 
91 aa  45.4  0.0003  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0206212  normal 
 
 
-
 
NC_012029  Hlac_0839  putative monovalent cation/H+ antiporter subunit F  30.43 
 
 
101 aa  45.1  0.0003  Halorubrum lacusprofundi ATCC 49239  Archaea  normal  normal 
 
 
-
 
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