85 homologs were found in PanDaTox collection
for query gene Slin_3259 on replicon NC_013730
Organism: Spirosoma linguale DSM 74



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013730  Slin_3259  putative transcriptional regulator, Crp/Fnr family  100 
 
 
194 aa  404  1.0000000000000001e-112  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.948479 
 
 
-
 
NC_008255  CHU_2259  cyclic nucleotide binding regulatory protein  60.1 
 
 
208 aa  263  1e-69  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_1022  putative transcriptional regulator, Crp/Fnr family  56.99 
 
 
194 aa  251  7e-66  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0347581  normal  0.646556 
 
 
-
 
NC_014230  CA2559_10168  hypothetical protein  26.37 
 
 
189 aa  78.2  0.00000000000007  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.578038  n/a   
 
 
-
 
NC_013132  Cpin_2485  putative transcriptional regulator, Crp/Fnr family  26.06 
 
 
189 aa  73.6  0.000000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.497978 
 
 
-
 
NC_013132  Cpin_0260  putative transcriptional regulator, Crp/Fnr family  28.28 
 
 
216 aa  66.2  0.0000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2316  putative transcriptional regulator, Crp/Fnr family  22.95 
 
 
191 aa  65.5  0.0000000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.144016  normal 
 
 
-
 
NC_009441  Fjoh_3217  cyclic nucleotide-binding protein  22.16 
 
 
189 aa  65.1  0.0000000005  Flavobacterium johnsoniae UW101  Bacteria  normal  0.336611  n/a   
 
 
-
 
NC_013037  Dfer_0358  putative transcriptional regulator, Crp/Fnr family  26.9 
 
 
192 aa  64.7  0.0000000008  Dyadobacter fermentans DSM 18053  Bacteria  decreased coverage  0.00654303  normal  0.458224 
 
 
-
 
NC_009441  Fjoh_3107  cyclic nucleotide-binding protein  22.63 
 
 
208 aa  63.5  0.000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_1544  putative transcriptional regulator, Crp/Fnr family  27.57 
 
 
194 aa  63.2  0.000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3955  cyclic nucleotide-binding protein  22.16 
 
 
200 aa  63.2  0.000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_5018  putative transcriptional regulator, Crp/Fnr family  23.33 
 
 
194 aa  63.5  0.000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.213439  normal  0.0399909 
 
 
-
 
NC_009441  Fjoh_4533  cyclic nucleotide-binding protein  22.78 
 
 
186 aa  61.6  0.000000007  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_0851  putative transcriptional regulator, Crp/Fnr family  24.87 
 
 
199 aa  60.5  0.00000001  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_2540  cyclic nucleotide binding regulatory protein  19.67 
 
 
211 aa  61.2  0.00000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.90473  normal 
 
 
-
 
NC_013132  Cpin_6003  putative transcriptional regulator, Crp/Fnr family  26.37 
 
 
196 aa  59.3  0.00000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_10488  hypothetical protein  21.55 
 
 
194 aa  58.9  0.00000005  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.497163  n/a   
 
 
-
 
NC_013132  Cpin_4002  putative transcriptional regulator, Crp/Fnr family  19.67 
 
 
187 aa  58.5  0.00000006  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.000843344  normal  0.0193683 
 
 
-
 
NC_013132  Cpin_2178  putative transcriptional regulator, Crp/Fnr family  24.71 
 
 
189 aa  58.5  0.00000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_1392  cyclic nucleotide-binding protein  21.81 
 
 
193 aa  57.8  0.0000001  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0639788  n/a   
 
 
-
 
NC_009441  Fjoh_2842  cyclic nucleotide-binding protein  20.11 
 
 
191 aa  56.6  0.0000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.814111  n/a   
 
 
-
 
NC_013037  Dfer_0777  putative transcriptional regulator, Crp/Fnr family  24.42 
 
 
198 aa  56.6  0.0000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.438607  normal  0.285853 
 
 
-
 
NC_009972  Haur_2655  cyclic nucleotide-binding protein  19.89 
 
 
196 aa  56.6  0.0000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.964381  n/a   
 
 
-
 
NC_013730  Slin_3830  putative transcriptional regulator, Crp/Fnr family  21.11 
 
 
201 aa  57  0.0000002  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.695222 
 
 
-
 
NC_008255  CHU_1942  cyclic nucleotide binding regulatory protein  21.39 
 
 
191 aa  56.2  0.0000003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0673232  normal  0.0303448 
 
 
-
 
NC_008255  CHU_0397  cyclic nucleotide binding regulatory protein  17.68 
 
 
185 aa  55.8  0.0000004  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.081454  normal  0.179633 
 
 
-
 
NC_013037  Dfer_0431  putative transcriptional regulator, Crp/Fnr family  22.75 
 
 
198 aa  55.8  0.0000004  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.7621  normal 
 
 
-
 
NC_013132  Cpin_7034  putative transcriptional regulator, Crp/Fnr family  23.08 
 
 
195 aa  54.7  0.0000008  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.000265791  normal 
 
 
-
 
NC_013132  Cpin_5649  putative transcriptional regulator, Crp/Fnr family  22.99 
 
 
204 aa  54.7  0.0000009  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.455016 
 
 
-
 
NC_013730  Slin_2093  putative transcriptional regulator, Crp/Fnr family  25.4 
 
 
198 aa  53.9  0.000001  Spirosoma linguale DSM 74  Bacteria  normal  0.177732  normal  0.144661 
 
 
-
 
NC_012791  Vapar_3628  putative transcriptional regulator, Crp/Fnr family  23.4 
 
 
203 aa  54.3  0.000001  Variovorax paradoxus S110  Bacteria  normal  0.531626  n/a   
 
 
-
 
NC_009441  Fjoh_3131  cyclic nucleotide-binding protein  22.22 
 
 
168 aa  53.1  0.000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.905779  n/a   
 
 
-
 
NC_009441  Fjoh_0475  cyclic nucleotide-binding protein  24.11 
 
 
189 aa  52.8  0.000003  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_3466  putative transcriptional regulator, Crp/Fnr family  22.09 
 
 
196 aa  52.4  0.000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.118195 
 
 
-
 
NC_013132  Cpin_1390  putative transcriptional regulator, Crp/Fnr family  20.32 
 
 
208 aa  52.4  0.000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_0889  putative transcriptional regulator, Crp/Fnr family  22.29 
 
 
217 aa  52  0.000005  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.00205469  normal  0.913069 
 
 
-
 
NC_009441  Fjoh_4303  cyclic nucleotide-binding protein  21.58 
 
 
201 aa  52  0.000006  Flavobacterium johnsoniae UW101  Bacteria  normal  0.814789  n/a   
 
 
-
 
NC_013730  Slin_3834  putative transcriptional regulator, Crp/Fnr family  22.86 
 
 
191 aa  52  0.000006  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_3085  cyclic nucleotide-binding protein  20.43 
 
 
190 aa  52  0.000006  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_5568  putative transcriptional regulator, Crp/Fnr family  21.28 
 
 
189 aa  50.4  0.00001  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.549141 
 
 
-
 
NC_008255  CHU_1116  cyclic nucleotide binding regulatory protein  22.1 
 
 
196 aa  50.8  0.00001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.221174  normal 
 
 
-
 
NC_009441  Fjoh_4064  cyclic nucleotide-binding protein  16.37 
 
 
189 aa  50.8  0.00001  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_1740  cyclic nucleotide-binding protein  22.94 
 
 
191 aa  49.7  0.00002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_0226  cyclic nucleotide binding regulatory protein  24.05 
 
 
187 aa  50.1  0.00002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.0203534 
 
 
-
 
NC_013730  Slin_0259  putative transcriptional regulator, Crp/Fnr family  20 
 
 
179 aa  50.1  0.00002  Spirosoma linguale DSM 74  Bacteria  normal  0.0493403  normal  0.0138145 
 
 
-
 
NC_013162  Coch_0933  cyclic nucleotide-binding protein  22.37 
 
 
175 aa  50.1  0.00002  Capnocytophaga ochracea DSM 7271  Bacteria  normal  0.0517277  n/a   
 
 
-
 
NC_013162  Coch_0582  cyclic nucleotide-binding protein  22.52 
 
 
194 aa  49.7  0.00002  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_2568  putative transcriptional regulator, Crp/Fnr family  24.46 
 
 
227 aa  49.3  0.00003  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.560798  normal 
 
 
-
 
NC_013132  Cpin_2676  putative transcriptional regulator, Crp/Fnr family  21.64 
 
 
192 aa  49.3  0.00003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.320981  normal 
 
 
-
 
NC_008255  CHU_1452  cyclic nucleotide binding regulatory protein  22.09 
 
 
192 aa  48.9  0.00005  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.177546  normal  0.82146 
 
 
-
 
NC_008255  CHU_2876  cyclic nucleotide binding regulatory protein  19.89 
 
 
202 aa  48.9  0.00005  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.132112  decreased coverage  0.0000795763 
 
 
-
 
NC_009441  Fjoh_2567  cyclic nucleotide-binding protein  19.44 
 
 
189 aa  48.5  0.00006  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_3997  cyclic nucleotide-binding protein  19.02 
 
 
216 aa  48.5  0.00006  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_5631  putative transcriptional regulator, Crp/Fnr family  21.57 
 
 
197 aa  48.5  0.00007  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.344618  normal  0.805191 
 
 
-
 
NC_008255  CHU_2485  cyclic nucleotide binding regulatory protein  18.78 
 
 
188 aa  48.1  0.00008  Cytophaga hutchinsonii ATCC 33406  Bacteria  hitchhiker  0.00499605  decreased coverage  0.00906372 
 
 
-
 
NC_007413  Ava_1692  cyclic nucleotide-binding protein  19.78 
 
 
196 aa  47.8  0.00009  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_3995  cyclic nucleotide-binding protein  19.15 
 
 
205 aa  47.4  0.0001  Saccharophagus degradans 2-40  Bacteria  normal  0.0432337  normal 
 
 
-
 
NC_013132  Cpin_4453  putative transcriptional regulator, Crp/Fnr family  21.64 
 
 
195 aa  47.4  0.0001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0381566  normal  0.0628964 
 
 
-
 
NC_013730  Slin_5714  putative transcriptional regulator, Crp/Fnr family  22.51 
 
 
194 aa  47  0.0002  Spirosoma linguale DSM 74  Bacteria  normal  hitchhiker  0.00341706 
 
 
-
 
NC_013132  Cpin_4565  putative transcriptional regulator, Crp/Fnr family  23.12 
 
 
197 aa  46.2  0.0003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.289048  normal  0.35844 
 
 
-
 
NC_013132  Cpin_4194  putative transcriptional regulator, Crp/Fnr family  21.59 
 
 
194 aa  45.8  0.0004  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.153014  normal  0.0498746 
 
 
-
 
NC_013037  Dfer_2871  putative transcriptional regulator, Crp/Fnr family  22.47 
 
 
193 aa  45.8  0.0004  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.00453056  normal  0.032413 
 
 
-
 
NC_008228  Patl_2773  cyclic nucleotide-binding protein  18.97 
 
 
198 aa  45.4  0.0005  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.724509  n/a   
 
 
-
 
NC_013132  Cpin_4252  putative transcriptional regulator, Crp/Fnr family  19.54 
 
 
189 aa  45.4  0.0005  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2727  putative transcriptional regulator, Crp/Fnr family  20.99 
 
 
197 aa  45.4  0.0005  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.0503116 
 
 
-
 
NC_013037  Dfer_1763  putative transcriptional regulator, Crp/Fnr family  21.55 
 
 
194 aa  45.4  0.0005  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.000000036343  normal  0.326349 
 
 
-
 
NC_008255  CHU_1090  cyclic nucleotide binding regulatory protein  25.74 
 
 
191 aa  45.1  0.0007  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.171648 
 
 
-
 
NC_013132  Cpin_5404  putative transcriptional regulator, Crp/Fnr family  20.42 
 
 
184 aa  45.1  0.0007  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.243298  normal  0.0626579 
 
 
-
 
NC_009441  Fjoh_4424  cyclic nucleotide-binding protein  19.35 
 
 
190 aa  45.1  0.0007  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1138  cyclic nucleotide-binding protein  24.14 
 
 
191 aa  44.7  0.0008  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0914153  n/a   
 
 
-
 
NC_013132  Cpin_4799  putative transcriptional regulator, Crp/Fnr family  20.39 
 
 
193 aa  43.9  0.001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0776586  hitchhiker  0.00198512 
 
 
-
 
NC_013132  Cpin_3646  putative transcriptional regulator, Crp/Fnr family  23.57 
 
 
200 aa  43.9  0.002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0908146  normal  0.454676 
 
 
-
 
NC_009441  Fjoh_0028  cyclic nucleotide-binding protein  23.53 
 
 
190 aa  43.5  0.002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_3733  cyclic nucleotide-binding protein  22.44 
 
 
213 aa  43.5  0.002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.263018  n/a   
 
 
-
 
NC_013132  Cpin_5637  putative transcriptional regulator, Crp/Fnr family  23.08 
 
 
189 aa  43.1  0.002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236441  normal  0.598189 
 
 
-
 
NC_013132  Cpin_4629  putative transcriptional regulator, Crp/Fnr family  22.03 
 
 
194 aa  43.1  0.002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.483165  normal  0.202471 
 
 
-
 
NC_013132  Cpin_4579  putative transcriptional regulator, Crp/Fnr family  21.17 
 
 
195 aa  43.9  0.002  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.249739  normal 
 
 
-
 
NC_013061  Phep_3758  cyclic nucleotide-binding  24.18 
 
 
199 aa  43.1  0.003  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_1351  cyclic nucleotide-binding  19.23 
 
 
188 aa  43.1  0.003  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_2833  transcriptional regulator, Crp/Fnr family  25.64 
 
 
213 aa  42.7  0.003  Meiothermus silvanus DSM 9946  Bacteria  normal  0.0320601  normal  0.661336 
 
 
-
 
NC_013132  Cpin_2686  putative transcriptional regulator, Crp/Fnr family  24.04 
 
 
195 aa  42  0.005  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4692  putative transcriptional regulator, Crp/Fnr family  24.83 
 
 
199 aa  42  0.006  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.177922  hitchhiker  0.00287495 
 
 
-
 
NC_013132  Cpin_6650  putative transcriptional regulator, Crp/Fnr family  19.23 
 
 
196 aa  41.6  0.007  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_3750  putative transcriptional regulator, Crp/Fnr family  19.07 
 
 
201 aa  41.2  0.01  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.44373  normal 
 
 
-
 
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