More than 300 homologs were found in PanDaTox collection
for query gene RPB_1688 on replicon NC_007778
Organism: Rhodopseudomonas palustris HaA2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_7116  putative acyl-CoA dehydrogenase  79.04 
 
 
415 aa  694    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1688  Acyl-CoA dehydrogenase-like  100 
 
 
415 aa  852    Rhodopseudomonas palustris HaA2  Bacteria  normal  0.78575  normal  0.535517 
 
 
-
 
NC_007778  RPB_1689  Acyl-CoA dehydrogenase-like  81.64 
 
 
415 aa  713    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.777163 
 
 
-
 
NC_007925  RPC_2198  acyl-CoA dehydrogenase-like  85.51 
 
 
413 aa  741    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.659729  normal 
 
 
-
 
NC_011004  Rpal_1909  acyl-CoA dehydrogenase domain protein  92.53 
 
 
415 aa  806    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.337795  n/a   
 
 
-
 
NC_007958  RPD_3604  acyl-CoA dehydrogenase-like  79.95 
 
 
414 aa  699    Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0502899  normal 
 
 
-
 
NC_007958  RPD_3605  acyl-CoA dehydrogenase-like  93.73 
 
 
415 aa  812    Rhodopseudomonas palustris BisB5  Bacteria  normal  0.75816  normal 
 
 
-
 
NC_009485  BBta_7117  putative acyl-CoA dehydrogenase  85.3 
 
 
414 aa  736    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.691802 
 
 
-
 
NC_011004  Rpal_1910  acyl-CoA dehydrogenase domain protein  80.92 
 
 
414 aa  708    Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_1604  acyl-CoA dehydrogenase domain-containing protein  61.69 
 
 
432 aa  553  1e-156  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_3426  acyl-CoA dehydrogenase domain-containing protein  54.5 
 
 
407 aa  459  9.999999999999999e-129  Caulobacter sp. K31  Bacteria  normal  0.751929  normal  0.216447 
 
 
-
 
NC_009719  Plav_0965  acyl-CoA dehydrogenase domain-containing protein  54.01 
 
 
409 aa  449  1e-125  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_1032  acyl-CoA dehydrogenase domain-containing protein  50.36 
 
 
411 aa  409  1e-113  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.605452  normal 
 
 
-
 
NC_009511  Swit_3397  acyl-CoA dehydrogenase domain-containing protein  48.18 
 
 
403 aa  374  1e-102  Sphingomonas wittichii RW1  Bacteria  hitchhiker  0.00717177  decreased coverage  0.00584794 
 
 
-
 
NC_008048  Sala_1636  acyl-CoA dehydrogenase-like protein  45.43 
 
 
401 aa  325  1e-87  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.552524 
 
 
-
 
NC_008048  Sala_1632  acyl-CoA dehydrogenase-like protein  44.69 
 
 
407 aa  323  4e-87  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.0101171  normal 
 
 
-
 
NC_013739  Cwoe_0736  acyl-CoA dehydrogenase domain protein  41.45 
 
 
403 aa  321  1.9999999999999998e-86  Conexibacter woesei DSM 14684  Bacteria  normal  0.453117  normal 
 
 
-
 
NC_008048  Sala_1246  acyl-CoA dehydrogenase-like protein  46.11 
 
 
384 aa  315  7e-85  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.235066  normal 
 
 
-
 
NC_009077  Mjls_5569  acyl-CoA dehydrogenase domain-containing protein  44.78 
 
 
396 aa  294  2e-78  Mycobacterium sp. JLS  Bacteria  normal  0.313382  normal 
 
 
-
 
NC_009338  Mflv_0344  acyl-CoA dehydrogenase domain-containing protein  44.63 
 
 
394 aa  294  2e-78  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_5188  acyl-CoA dehydrogenase-like protein  44.51 
 
 
396 aa  292  6e-78  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_5277  acyl-CoA dehydrogenase domain-containing protein  44.51 
 
 
396 aa  292  6e-78  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_2813  acyl-CoA dehydrogenase domain-containing protein  40.35 
 
 
380 aa  291  1e-77  Salinispora tropica CNB-440  Bacteria  normal  0.249465  normal 
 
 
-
 
NC_008726  Mvan_0394  acyl-CoA dehydrogenase domain-containing protein  44.81 
 
 
398 aa  291  1e-77  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.254856  normal  0.326104 
 
 
-
 
NC_013595  Sros_6825  dehydrogenase family protein  39.51 
 
 
393 aa  289  7e-77  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.178037 
 
 
-
 
NC_013595  Sros_7781  acyl-CoA dehydrogenase domain-containing protein  43.68 
 
 
395 aa  283  3.0000000000000004e-75  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_2698  acyl-CoA dehydrogenase domain-containing protein  43.75 
 
 
390 aa  283  6.000000000000001e-75  Thermobispora bispora DSM 43833  Bacteria  normal  0.96365  normal  0.79248 
 
 
-
 
NC_013131  Caci_1155  acyl-CoA dehydrogenase domain protein  47 
 
 
396 aa  282  9e-75  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_1475  acyl-CoA dehydrogenase domain protein  41.84 
 
 
397 aa  278  1e-73  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0513972  n/a   
 
 
-
 
NC_013739  Cwoe_0960  acyl-CoA dehydrogenase domain protein  38.23 
 
 
378 aa  278  1e-73  Conexibacter woesei DSM 14684  Bacteria  normal  0.489478  normal 
 
 
-
 
NC_007333  Tfu_2309  putative acyl-CoA dehydrogenase  42.78 
 
 
411 aa  274  2.0000000000000002e-72  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_3342  acyl-CoA dehydrogenase domain protein  39.23 
 
 
393 aa  274  3e-72  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_5572  acyl-CoA dehydrogenase domain-containing protein  44.11 
 
 
398 aa  274  3e-72  Frankia sp. EAN1pec  Bacteria  normal  0.98735  normal 
 
 
-
 
NC_008699  Noca_0803  acyl-CoA dehydrogenase domain-containing protein  38.29 
 
 
378 aa  266  5e-70  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_16750  acyl-CoA dehydrogenase  43.09 
 
 
403 aa  265  8.999999999999999e-70  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.73205  normal 
 
 
-
 
NC_009077  Mjls_2574  acyl-CoA dehydrogenase domain-containing protein  38.9 
 
 
385 aa  263  3e-69  Mycobacterium sp. JLS  Bacteria  normal  0.762648  normal 
 
 
-
 
NC_013947  Snas_2909  acyl-CoA dehydrogenase domain-containing protein  43.21 
 
 
396 aa  259  6e-68  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.25619  normal  0.0238889 
 
 
-
 
NC_009077  Mjls_4064  acyl-CoA dehydrogenase domain-containing protein  37.62 
 
 
390 aa  256  4e-67  Mycobacterium sp. JLS  Bacteria  normal  normal  0.725849 
 
 
-
 
NC_008048  Sala_0875  acyl-CoA dehydrogenase-like protein  36.41 
 
 
383 aa  256  6e-67  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_1861  acyl-CoA dehydrogenase domain protein  40.76 
 
 
395 aa  255  1.0000000000000001e-66  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_1367  acyl-CoA dehydrogenase domain protein  36.27 
 
 
400 aa  254  2.0000000000000002e-66  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_2706  acyl-CoA dehydrogenase domain protein  37.09 
 
 
383 aa  254  2.0000000000000002e-66  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0953492  n/a   
 
 
-
 
NC_008726  Mvan_0403  acyl-CoA dehydrogenase domain-containing protein  38.04 
 
 
737 aa  252  9.000000000000001e-66  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
CP001800  Ssol_0320  acyl-CoA dehydrogenase domain protein  36.76 
 
 
370 aa  248  1e-64  Sulfolobus solfataricus 98/2  Archaea  normal  0.25734  n/a   
 
 
-
 
CP001800  Ssol_2123  acyl-CoA dehydrogenase domain protein  38.27 
 
 
363 aa  248  1e-64  Sulfolobus solfataricus 98/2  Archaea  unclonable  0.000012052  n/a   
 
 
-
 
NC_007777  Francci3_0939  acyl-CoA dehydrogenase-like  35.59 
 
 
392 aa  248  2e-64  Frankia sp. CcI3  Bacteria  normal  0.0130462  normal  0.579337 
 
 
-
 
NC_009077  Mjls_4096  acyl-CoA dehydrogenase domain-containing protein  33.91 
 
 
396 aa  248  2e-64  Mycobacterium sp. JLS  Bacteria  normal  0.0624184  normal 
 
 
-
 
NC_008699  Noca_4134  acyl-CoA dehydrogenase domain-containing protein  36.93 
 
 
413 aa  247  2e-64  Nocardioides sp. JS614  Bacteria  normal  0.355452  n/a   
 
 
-
 
NC_009921  Franean1_5603  acyl-CoA dehydrogenase domain-containing protein  34.84 
 
 
462 aa  248  2e-64  Frankia sp. EAN1pec  Bacteria  normal  0.447806  hitchhiker  0.00691492 
 
 
-
 
NC_009338  Mflv_0335  acyl-CoA dehydrogenase domain-containing protein  37.28 
 
 
728 aa  244  1.9999999999999999e-63  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_0355  acyl-CoA dehydrogenase domain-containing protein  41.89 
 
 
730 aa  244  3e-63  Mycobacterium sp. JLS  Bacteria  normal  0.353074  normal 
 
 
-
 
NC_008146  Mmcs_0366  acyl-CoA dehydrogenase-like protein  41.89 
 
 
730 aa  244  3e-63  Mycobacterium sp. MCS  Bacteria  normal  0.235849  n/a   
 
 
-
 
NC_008705  Mkms_0376  acyl-CoA dehydrogenase domain-containing protein  41.89 
 
 
730 aa  244  3e-63  Mycobacterium sp. KMS  Bacteria  normal  0.262889  normal 
 
 
-
 
NC_013510  Tcur_4613  acyl-CoA dehydrogenase domain protein  35.8 
 
 
394 aa  243  7e-63  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_2091  acyl-CoA dehydrogenase domain-containing protein  35.94 
 
 
381 aa  241  2e-62  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_1060  acyl-CoA dehydrogenase domain-containing protein  33 
 
 
397 aa  239  5e-62  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.596056  normal 
 
 
-
 
NC_009719  Plav_1805  acyl-CoA dehydrogenase domain-containing protein  37.33 
 
 
397 aa  239  5e-62  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.337752  normal 
 
 
-
 
NC_009565  TBFG_10275  acyl-CoA dehydrogenase fadE6  40.12 
 
 
731 aa  239  5.999999999999999e-62  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0482205 
 
 
-
 
NC_008726  Mvan_4006  acyl-CoA dehydrogenase domain-containing protein  34.43 
 
 
419 aa  238  1e-61  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_0496  acyl-CoA dehydrogenase domain-containing protein  35.12 
 
 
400 aa  237  2e-61  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.954912  normal 
 
 
-
 
NC_007651  BTH_I1078  acyl-CoA dehydrogenase domain-containing protein  34.31 
 
 
398 aa  236  5.0000000000000005e-61  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_2177  acyl-CoA dehydrogenase domain protein  38.51 
 
 
732 aa  236  6e-61  Thermomonospora curvata DSM 43183  Bacteria  decreased coverage  0.00000163847  n/a   
 
 
-
 
NC_013510  Tcur_3998  acyl-CoA dehydrogenase domain protein  37.4 
 
 
734 aa  235  9e-61  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0183743  n/a   
 
 
-
 
NC_011894  Mnod_5441  pimeloyl-CoA dehydrogenase, large subunit  34.47 
 
 
402 aa  234  2.0000000000000002e-60  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.504048  n/a   
 
 
-
 
NC_010338  Caul_1447  acyl-CoA dehydrogenase domain-containing protein  37.15 
 
 
401 aa  234  2.0000000000000002e-60  Caulobacter sp. K31  Bacteria  normal  normal  0.0993289 
 
 
-
 
NC_014158  Tpau_3797  acyl-CoA dehydrogenase domain protein  39.3 
 
 
694 aa  233  4.0000000000000004e-60  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3589  acyl-CoA dehydrogenase domain-containing protein  34.99 
 
 
404 aa  233  5e-60  Frankia sp. EAN1pec  Bacteria  normal  normal  0.646816 
 
 
-
 
NC_009921  Franean1_4581  acyl-CoA dehydrogenase domain-containing protein  36.21 
 
 
394 aa  233  5e-60  Frankia sp. EAN1pec  Bacteria  normal  normal  0.676846 
 
 
-
 
NC_009074  BURPS668_1307  acyl-CoA dehydrogenase  33.49 
 
 
398 aa  233  5e-60  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_2719  acyl-CoA dehydrogenase domain-containing protein  32.54 
 
 
429 aa  233  6e-60  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0801  acyl-CoA dehydrogenase domain-containing protein  37.78 
 
 
736 aa  233  7.000000000000001e-60  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_3633  acyl-CoA dehydrogenase domain-containing protein  35.47 
 
 
393 aa  233  7.000000000000001e-60  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.752817 
 
 
-
 
NC_007434  BURPS1710b_1453  putative acyl-CoA dehydrogenase family protein  33.49 
 
 
398 aa  232  8.000000000000001e-60  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_1316  acyl-CoA dehydrogenase  33.49 
 
 
398 aa  232  8.000000000000001e-60  Burkholderia pseudomallei 1106a  Bacteria  normal  0.23333  n/a   
 
 
-
 
NC_009080  BMA10247_0430  acyl-CoA dehydrogenase  33.49 
 
 
398 aa  232  8.000000000000001e-60  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1147  acyl-CoA dehydrogenase  33.49 
 
 
398 aa  232  8.000000000000001e-60  Burkholderia mallei SAVP1  Bacteria  normal  0.383138  n/a   
 
 
-
 
NC_008836  BMA10229_A0720  acyl-CoA dehydrogenase domain-containing protein  33.49 
 
 
398 aa  232  8.000000000000001e-60  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_1807  acyl-CoA dehydrogenase domain-containing protein  34.46 
 
 
399 aa  232  9e-60  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.167167  normal 
 
 
-
 
NC_009338  Mflv_2334  acyl-CoA dehydrogenase domain-containing protein  39.67 
 
 
400 aa  232  1e-59  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.615469 
 
 
-
 
NC_007510  Bcep18194_A5560  Acyl-CoA dehydrogenase  33.17 
 
 
398 aa  231  1e-59  Burkholderia sp. 383  Bacteria  normal  normal  0.198235 
 
 
-
 
NC_013159  Svir_17890  acyl-CoA dehydrogenase  38.35 
 
 
402 aa  231  1e-59  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0953451  normal  0.548212 
 
 
-
 
NC_009485  BBta_0702  putative acyl-CoA dehydrogenase  35.82 
 
 
394 aa  231  1e-59  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_2814  acyl-CoA dehydrogenase domain-containing protein  36.43 
 
 
386 aa  231  2e-59  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00382252 
 
 
-
 
NC_010508  Bcenmc03_2256  acyl-CoA dehydrogenase domain-containing protein  33.66 
 
 
398 aa  231  2e-59  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A3192  putative pimeloyl-CoA dehydrogenase (large subunit), PimC-like  34.14 
 
 
398 aa  231  2e-59  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_2149  acyl-CoA dehydrogenase domain-containing protein  33.66 
 
 
398 aa  230  3e-59  Burkholderia ambifaria MC40-6  Bacteria  normal  0.324611  normal  0.360268 
 
 
-
 
NC_009719  Plav_1872  acyl-CoA dehydrogenase domain-containing protein  35.02 
 
 
397 aa  230  4e-59  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.364161 
 
 
-
 
NC_008699  Noca_2767  acyl-CoA dehydrogenase domain-containing protein  35.71 
 
 
378 aa  230  4e-59  Nocardioides sp. JS614  Bacteria  normal  0.259881  n/a   
 
 
-
 
NC_009921  Franean1_2922  acyl-CoA dehydrogenase domain-containing protein  33.74 
 
 
416 aa  230  4e-59  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_1620  acyl-CoA dehydrogenase-like  33.41 
 
 
398 aa  229  5e-59  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_2232  acyl-CoA dehydrogenase domain-containing protein  33.41 
 
 
398 aa  229  5e-59  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_2270  acyl-CoA dehydrogenase domain-containing protein  33.41 
 
 
398 aa  229  8e-59  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_2603  acyl-CoA dehydrogenase domain protein  38.27 
 
 
719 aa  229  9e-59  Thermomonospora curvata DSM 43183  Bacteria  normal  0.035645  n/a   
 
 
-
 
NC_009565  TBFG_11963  acyl-CoA dehydrogenase fadE17  34.62 
 
 
409 aa  228  1e-58  Mycobacterium tuberculosis F11  Bacteria  normal  0.0444584  normal  0.860383 
 
 
-
 
NC_012856  Rpic12D_1874  acyl-CoA dehydrogenase domain protein  31.54 
 
 
398 aa  227  2e-58  Ralstonia pickettii 12D  Bacteria  normal  normal  0.400233 
 
 
-
 
NC_008048  Sala_1104  acyl-CoA dehydrogenase-like protein  32.51 
 
 
397 aa  228  2e-58  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.289526  normal 
 
 
-
 
NC_010511  M446_0233  pimeloyl-CoA dehydrogenase, large subunit  33.9 
 
 
400 aa  228  2e-58  Methylobacterium sp. 4-46  Bacteria  normal  0.172287  normal  0.0105147 
 
 
-
 
NC_010681  Bphyt_1362  acyl-CoA dehydrogenase domain protein  33.57 
 
 
398 aa  227  3e-58  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0703001  decreased coverage  0.000728046 
 
 
-
 
NC_014158  Tpau_3835  acyl-CoA dehydrogenase domain protein  33.5 
 
 
382 aa  227  3e-58  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_2197  acyl-CoA dehydrogenase domain protein  31.07 
 
 
398 aa  227  3e-58  Ralstonia pickettii 12J  Bacteria  normal  normal  0.34264 
 
 
-
 
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