More than 300 homologs were found in PanDaTox collection
for query gene Dshi_3024 on replicon NC_009952
Organism: Dinoroseobacter shibae DFL 12



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009952  Dshi_3024  ADA regulatory protein  100 
 
 
287 aa  575  1.0000000000000001e-163  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.697686  normal  0.421668 
 
 
-
 
NC_007802  Jann_1668  transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase  75.93 
 
 
267 aa  399  9.999999999999999e-111  Jannaschia sp. CCS1  Bacteria  normal  0.490998  normal 
 
 
-
 
NC_009428  Rsph17025_0196  methylated-DNA--protein-cysteine methyltransferase  74.91 
 
 
282 aa  386  1e-106  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1032  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  73.06 
 
 
282 aa  379  1e-104  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.259585  n/a   
 
 
-
 
NC_008044  TM1040_2450  AraC family transcriptional regulator  72.26 
 
 
283 aa  378  1e-104  Ruegeria sp. TM1040  Bacteria  normal  0.416405  normal  0.151746 
 
 
-
 
NC_009049  Rsph17029_2693  methylated-DNA--protein-cysteine methyltransferase  72.69 
 
 
282 aa  377  1e-103  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.116111 
 
 
-
 
NC_011989  Avi_3845  methylated-DNA--protein- cysteinemethyltransferase  53.21 
 
 
295 aa  271  1e-71  Agrobacterium vitis S4  Bacteria  normal  0.80027  n/a   
 
 
-
 
NC_008254  Meso_3569  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  52.35 
 
 
294 aa  268  7e-71  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_3739  methylated-DNA/protein-cysteine methyltransferase  51.84 
 
 
290 aa  264  1e-69  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3439  methylated-DNA/protein-cysteine methyltransferase  51.1 
 
 
290 aa  263  3e-69  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_3373  methylated-DNA--protein-cysteine methyltransferase  51.79 
 
 
290 aa  263  3e-69  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0437  AraC family transcriptional regulator  47.99 
 
 
298 aa  244  9.999999999999999e-64  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.988834 
 
 
-
 
NC_011004  Rpal_0344  transcriptional regulator, AraC family  47.62 
 
 
310 aa  242  5e-63  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.251255  n/a   
 
 
-
 
NC_013061  Phep_0721  methylated-DNA/protein-cysteine methyltransferase  46.67 
 
 
279 aa  242  5e-63  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_0337  AraC family transcriptional regulator  50 
 
 
310 aa  242  6e-63  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_0203  methylated-DNA-(protein)-cysteine S-methyltransferase  50.74 
 
 
314 aa  241  1e-62  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.661415  normal  0.947991 
 
 
-
 
NC_007958  RPD_0383  methylated-DNA--protein-cysteine methyltransferase  47.62 
 
 
310 aa  241  1e-62  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2299  transcriptional regulator, AraC family  42.96 
 
 
284 aa  239  2.9999999999999997e-62  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.015219  normal 
 
 
-
 
NC_009720  Xaut_2813  methylated-DNA--protein-cysteine methyltransferase  50.9 
 
 
309 aa  237  1e-61  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.305284 
 
 
-
 
NC_009485  BBta_0199  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  48.53 
 
 
299 aa  237  2e-61  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_0565  transcriptional regulator, AraC family  43.55 
 
 
286 aa  236  4e-61  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0160  AraC family transcriptional regulator  49.26 
 
 
314 aa  234  1.0000000000000001e-60  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3879  transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase  43.26 
 
 
293 aa  232  6e-60  Saccharophagus degradans 2-40  Bacteria  normal  0.612619  normal  0.1278 
 
 
-
 
NC_009441  Fjoh_1575  methylated-DNA--protein-cysteine methyltransferase  43.11 
 
 
282 aa  231  1e-59  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_3799  transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase  42.09 
 
 
282 aa  231  1e-59  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.198911 
 
 
-
 
NC_013061  Phep_0314  methylated-DNA/protein-cysteine methyltransferase  45.97 
 
 
251 aa  229  4e-59  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.135594 
 
 
-
 
NC_008347  Mmar10_2993  AraC family transcriptional regulator  49.8 
 
 
282 aa  227  1e-58  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_0549  transcriptional regulator, AraC family  41.7 
 
 
289 aa  226  4e-58  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.587181 
 
 
-
 
NC_012912  Dd1591_0948  transcriptional regulator, AraC family  42.28 
 
 
275 aa  221  9.999999999999999e-57  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_1519  methylated-DNA--protein-cysteine methyltransferase  42.58 
 
 
280 aa  217  2e-55  Marinomonas sp. MWYL1  Bacteria  normal  0.0758947  normal  0.0152511 
 
 
-
 
NC_003910  CPS_3353  methylated-DNA--protein-cysteine methyltransferase  39.08 
 
 
282 aa  216  2.9999999999999998e-55  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1493  methylated-DNA--protein-cysteine methyltransferase  42.22 
 
 
276 aa  216  4e-55  Shewanella denitrificans OS217  Bacteria  decreased coverage  0.0000000302117  n/a   
 
 
-
 
NC_009052  Sbal_3470  methylated-DNA--protein-cysteine methyltransferase  42.58 
 
 
280 aa  216  5e-55  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_0866  methylated-DNA--protein-cysteine methyltransferase  42.97 
 
 
280 aa  215  5.9999999999999996e-55  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0891  transcriptional regulator, AraC family  43.5 
 
 
280 aa  214  9e-55  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_2691  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  41.64 
 
 
297 aa  214  9e-55  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_5050  AraC family transcriptional regulator  46.77 
 
 
293 aa  214  9.999999999999999e-55  Caulobacter sp. K31  Bacteria  normal  normal  0.148414 
 
 
-
 
NC_013161  Cyan8802_2395  transcriptional regulator, AraC family  41.43 
 
 
300 aa  213  1.9999999999999998e-54  Cyanothece sp. PCC 8802  Bacteria  normal  0.374624  normal 
 
 
-
 
NC_011726  PCC8801_2345  transcriptional regulator, AraC family  41.07 
 
 
302 aa  210  3e-53  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007575  Suden_1946  AraC family transcriptional regulator  35.77 
 
 
282 aa  200  1.9999999999999998e-50  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.609227  n/a   
 
 
-
 
NC_007951  Bxe_A4482  AraC family transcriptional regulator  39.55 
 
 
401 aa  181  1e-44  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.00000000221745  unclonable  0.0000015212 
 
 
-
 
NC_010622  Bphy_3088  AraC family transcriptional regulator  40 
 
 
376 aa  180  2e-44  Burkholderia phymatum STM815  Bacteria  hitchhiker  0.000000118536  hitchhiker  0.0000000000000798373 
 
 
-
 
NC_007651  BTH_I0085  ADA regulatory protein  40.22 
 
 
364 aa  179  4.999999999999999e-44  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.000000000911419  n/a   
 
 
-
 
NC_007434  BURPS1710b_0322  O6-methylguanine-DNA methyltransferase  40.22 
 
 
364 aa  178  1e-43  Burkholderia pseudomallei 1710b  Bacteria  unclonable  0.00000000161378  n/a   
 
 
-
 
NC_009074  BURPS668_0116  regulatory protein ada (regulatory protein of adaptative response)  40.22 
 
 
364 aa  178  1e-43  Burkholderia pseudomallei 668  Bacteria  hitchhiker  0.00000000327978  n/a   
 
 
-
 
NC_006348  BMA0115  ADA regulatory protein  39.85 
 
 
364 aa  177  2e-43  Burkholderia mallei ATCC 23344  Bacteria  hitchhiker  0.0000393468  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2836  ADA regulatory protein  39.85 
 
 
364 aa  177  2e-43  Burkholderia mallei SAVP1  Bacteria  hitchhiker  0.00000000000994394  n/a   
 
 
-
 
NC_009080  BMA10247_2300  regulatory protein ada (regulatory protein of adaptative response)  39.85 
 
 
364 aa  177  2e-43  Burkholderia mallei NCTC 10247  Bacteria  hitchhiker  0.000121844  n/a   
 
 
-
 
NC_009076  BURPS1106A_0132  ADA regulatory protein  39.85 
 
 
364 aa  177  2e-43  Burkholderia pseudomallei 1106a  Bacteria  normal  0.0622499  n/a   
 
 
-
 
NC_009080  BMA10247_2323  ADA regulatory protein  39.85 
 
 
364 aa  177  2e-43  Burkholderia mallei NCTC 10247  Bacteria  decreased coverage  0.00000161007  n/a   
 
 
-
 
NC_008836  BMA10229_A2249  ADA regulatory protein  39.85 
 
 
364 aa  177  2e-43  Burkholderia mallei NCTC 10229  Bacteria  hitchhiker  0.000000255362  n/a   
 
 
-
 
NC_010681  Bphyt_3955  transcriptional regulator, AraC family  38.52 
 
 
391 aa  175  7e-43  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.0000156521  normal  0.830157 
 
 
-
 
NC_010551  BamMC406_3089  AraC family transcriptional regulator  39.55 
 
 
363 aa  174  1.9999999999999998e-42  Burkholderia ambifaria MC40-6  Bacteria  hitchhiker  0.000000381417  hitchhiker  0.0021619 
 
 
-
 
NC_008390  Bamb_3205  AraC family transcriptional regulator  39.55 
 
 
380 aa  173  2.9999999999999996e-42  Burkholderia ambifaria AMMD  Bacteria  hitchhiker  0.000040374  n/a   
 
 
-
 
NC_007510  Bcep18194_A6508  bifunctional DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  39.18 
 
 
363 aa  171  2e-41  Burkholderia sp. 383  Bacteria  hitchhiker  0.000000013299  normal  0.0946299 
 
 
-
 
NC_007794  Saro_2396  transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase  40.91 
 
 
343 aa  169  4e-41  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_3145  AraC family transcriptional regulator  39.55 
 
 
365 aa  169  4e-41  Burkholderia multivorans ATCC 17616  Bacteria  hitchhiker  0.0000000198948  unclonable  0.00000000000612342 
 
 
-
 
NC_010508  Bcenmc03_3171  AraC family transcriptional regulator  39.26 
 
 
363 aa  168  9e-41  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.0000000719173  decreased coverage  0.000000135353 
 
 
-
 
NC_008048  Sala_2282  AraC family transcriptional regulator  39.53 
 
 
345 aa  168  1e-40  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2539  AraC family transcriptional regulator  38.89 
 
 
363 aa  168  1e-40  Burkholderia cenocepacia AU 1054  Bacteria  hitchhiker  0.0000057895  n/a   
 
 
-
 
NC_008542  Bcen2424_3152  AraC family transcriptional regulator  38.89 
 
 
363 aa  168  1e-40  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.00000475647  n/a   
 
 
-
 
NC_014212  Mesil_0991  methylated-DNA/protein- cysteinemethyltransferase  37.83 
 
 
295 aa  166  2.9999999999999998e-40  Meiothermus silvanus DSM 9946  Bacteria  normal  0.275505  normal  0.265908 
 
 
-
 
NC_010511  M446_1042  AraC family transcriptional regulator  38.46 
 
 
370 aa  154  2e-36  Methylobacterium sp. 4-46  Bacteria  normal  0.826547  normal 
 
 
-
 
NC_011894  Mnod_0501  transcriptional regulator, AraC family  37.78 
 
 
374 aa  152  5e-36  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.399439  n/a   
 
 
-
 
NC_008740  Maqu_2956  methylated-DNA--protein-cysteine methyltransferase  36.3 
 
 
303 aa  152  7e-36  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A4931  AraC family transcriptional regulator  35.06 
 
 
354 aa  150  3e-35  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_3595  Ada regulatory protein  33.94 
 
 
368 aa  149  6e-35  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_0740  AraC family transcriptional regulator  33.45 
 
 
350 aa  146  4.0000000000000006e-34  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0739  methylated-DNA--protein-cysteine methyltransferase  32.12 
 
 
350 aa  144  1e-33  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_2874  methylated-DNA--protein-cysteine methyltransferase  48.43 
 
 
198 aa  145  1e-33  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.396011 
 
 
-
 
NC_007005  Psyr_3365  methylated-DNA-[protein]-cysteine S-methyltransferase  34.13 
 
 
384 aa  144  2e-33  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_2856  transcriptional regulator, AraC family  33.82 
 
 
361 aa  144  2e-33  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_4835  transcriptional regulator, AraC family  38.52 
 
 
360 aa  142  5e-33  Methylobacterium populi BJ001  Bacteria  normal  0.0179003  normal  0.379038 
 
 
-
 
NC_008463  PA14_37190  O6-methylguanine-DNA methyltransferase  34.12 
 
 
358 aa  141  9.999999999999999e-33  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0320795  normal 
 
 
-
 
NC_008687  Pden_4239  methylated-DNA--protein-cysteine methyltransferase  34.59 
 
 
353 aa  141  9.999999999999999e-33  Paracoccus denitrificans PD1222  Bacteria  normal  0.577797  normal  0.120321 
 
 
-
 
NC_002947  PP_0706  adaptive response regulator protein  32.12 
 
 
350 aa  140  1.9999999999999998e-32  Pseudomonas putida KT2440  Bacteria  normal  0.998073  normal 
 
 
-
 
NC_009505  BOV_0383  ada regulatory protein  31.77 
 
 
361 aa  140  1.9999999999999998e-32  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A2608  regulatory protein ada  34.88 
 
 
352 aa  140  3e-32  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.669578 
 
 
-
 
NC_012856  Rpic12D_2450  transcriptional regulator, AraC family  33.85 
 
 
361 aa  139  3.9999999999999997e-32  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_3765  bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase  34.23 
 
 
354 aa  140  3.9999999999999997e-32  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0476  methylated-DNA--protein-cysteine methyltransferase  31.89 
 
 
361 aa  139  3.9999999999999997e-32  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR0368  ada regulatory protein  31.77 
 
 
361 aa  139  4.999999999999999e-32  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_0834  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  34.77 
 
 
340 aa  139  4.999999999999999e-32  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A2491  regulatory protein ada  34.77 
 
 
353 aa  139  6e-32  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc2570  bifunctional methylated-DNA--protein-cysteine methyltransferase/O-6-methylguanine-DNA transcription regulator  34.62 
 
 
360 aa  139  7.999999999999999e-32  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_2938  AraC family transcriptional regulator  33.58 
 
 
357 aa  139  7.999999999999999e-32  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A2449  regulatory protein ada  34.88 
 
 
352 aa  138  1e-31  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.0458356 
 
 
-
 
NC_011149  SeAg_B2401  regulatory protein ada  34.88 
 
 
352 aa  138  1e-31  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.00982046  n/a   
 
 
-
 
NC_011083  SeHA_C2505  regulatory protein ada  34.88 
 
 
352 aa  138  1e-31  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.899315  hitchhiker  0.000630655 
 
 
-
 
NC_009656  PSPA7_3190  O6-methylguanine-DNA methyltransferase  34.72 
 
 
358 aa  137  2e-31  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_4687  transcriptional regulator, AraC family  38.72 
 
 
361 aa  137  2e-31  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_02140  fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase  31.1 
 
 
354 aa  136  3.0000000000000003e-31  Escherichia coli BL21(DE3)  Bacteria  normal  0.581837  n/a   
 
 
-
 
NC_012892  B21_02099  hypothetical protein  31.1 
 
 
354 aa  136  3.0000000000000003e-31  Escherichia coli BL21  Bacteria  normal  0.592554  n/a   
 
 
-
 
CP001637  EcDH1_1445  transcriptional regulator, AraC family  31.1 
 
 
354 aa  136  4e-31  Escherichia coli DH1  Bacteria  normal  0.29559  n/a   
 
 
-
 
NC_010468  EcolC_1437  AraC family transcriptional regulator  31.1 
 
 
354 aa  136  4e-31  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.195699 
 
 
-
 
NC_010172  Mext_4318  methylated-DNA--protein-cysteine methyltransferase  38.72 
 
 
380 aa  136  4e-31  Methylobacterium extorquens PA1  Bacteria  normal  0.155933  normal 
 
 
-
 
NC_011353  ECH74115_3351  regulatory protein Ada  32.16 
 
 
354 aa  136  5e-31  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.212963  normal 
 
 
-
 
NC_010658  SbBS512_E0727  regulatory protein Ada  32.16 
 
 
354 aa  135  7.000000000000001e-31  Shigella boydii CDC 3083-94  Bacteria  normal  0.166972  n/a   
 
 
-
 
NC_013421  Pecwa_1027  transcriptional regulator, AraC family  34.05 
 
 
359 aa  135  7.000000000000001e-31  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_2512  regulatory protein Ada  32.16 
 
 
354 aa  135  7.000000000000001e-31  Escherichia coli E24377A  Bacteria  normal  0.0107303  n/a   
 
 
-
 
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