More than 300 homologs were found in PanDaTox collection
for query gene TM1040_2450 on replicon NC_008044
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008044  TM1040_2450  AraC family transcriptional regulator  100 
 
 
283 aa  573  1.0000000000000001e-162  Ruegeria sp. TM1040  Bacteria  normal  0.416405  normal  0.151746 
 
 
-
 
NC_009952  Dshi_3024  ADA regulatory protein  71.48 
 
 
287 aa  388  1e-107  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.697686  normal  0.421668 
 
 
-
 
NC_007802  Jann_1668  transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase  67.42 
 
 
267 aa  367  1e-100  Jannaschia sp. CCS1  Bacteria  normal  0.490998  normal 
 
 
-
 
NC_009428  Rsph17025_0196  methylated-DNA--protein-cysteine methyltransferase  66.3 
 
 
282 aa  360  1e-98  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1032  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  65.2 
 
 
282 aa  357  9.999999999999999e-98  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.259585  n/a   
 
 
-
 
NC_009049  Rsph17029_2693  methylated-DNA--protein-cysteine methyltransferase  64.84 
 
 
282 aa  355  3.9999999999999996e-97  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.116111 
 
 
-
 
NC_011989  Avi_3845  methylated-DNA--protein- cysteinemethyltransferase  51.65 
 
 
295 aa  264  1e-69  Agrobacterium vitis S4  Bacteria  normal  0.80027  n/a   
 
 
-
 
NC_009636  Smed_3373  methylated-DNA--protein-cysteine methyltransferase  51.1 
 
 
290 aa  261  1e-68  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3739  methylated-DNA/protein-cysteine methyltransferase  50.55 
 
 
290 aa  260  2e-68  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3439  methylated-DNA/protein-cysteine methyltransferase  49.82 
 
 
290 aa  258  7e-68  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_3569  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  50.18 
 
 
294 aa  258  9e-68  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_2299  transcriptional regulator, AraC family  44.6 
 
 
284 aa  238  6.999999999999999e-62  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.015219  normal 
 
 
-
 
NC_011004  Rpal_0344  transcriptional regulator, AraC family  46.04 
 
 
310 aa  237  2e-61  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.251255  n/a   
 
 
-
 
NC_009441  Fjoh_1575  methylated-DNA--protein-cysteine methyltransferase  41.94 
 
 
282 aa  234  8e-61  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_3799  transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase  41.49 
 
 
282 aa  234  1.0000000000000001e-60  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.198911 
 
 
-
 
NC_007958  RPD_0383  methylated-DNA--protein-cysteine methyltransferase  45.32 
 
 
310 aa  234  2.0000000000000002e-60  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_0721  methylated-DNA/protein-cysteine methyltransferase  43.91 
 
 
279 aa  233  2.0000000000000002e-60  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0437  AraC family transcriptional regulator  45.32 
 
 
298 aa  233  3e-60  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.988834 
 
 
-
 
NC_007912  Sde_3879  transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase  43.21 
 
 
293 aa  229  4e-59  Saccharophagus degradans 2-40  Bacteria  normal  0.612619  normal  0.1278 
 
 
-
 
NC_013730  Slin_0565  transcriptional regulator, AraC family  43.16 
 
 
286 aa  229  5e-59  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_0549  transcriptional regulator, AraC family  40.71 
 
 
289 aa  226  4e-58  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.587181 
 
 
-
 
NC_009720  Xaut_2813  methylated-DNA--protein-cysteine methyltransferase  50.9 
 
 
309 aa  226  4e-58  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.305284 
 
 
-
 
NC_012912  Dd1591_0948  transcriptional regulator, AraC family  43.8 
 
 
275 aa  225  5.0000000000000005e-58  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_0337  AraC family transcriptional regulator  44.44 
 
 
310 aa  224  9e-58  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_008347  Mmar10_2993  AraC family transcriptional regulator  48.79 
 
 
282 aa  223  3e-57  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_0203  methylated-DNA-(protein)-cysteine S-methyltransferase  45.39 
 
 
314 aa  222  6e-57  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.661415  normal  0.947991 
 
 
-
 
NC_009485  BBta_0199  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  43.75 
 
 
299 aa  219  3e-56  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_0314  methylated-DNA/protein-cysteine methyltransferase  43.72 
 
 
251 aa  219  6e-56  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.135594 
 
 
-
 
NC_007964  Nham_0160  AraC family transcriptional regulator  44.12 
 
 
314 aa  218  1e-55  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_3353  methylated-DNA--protein-cysteine methyltransferase  38.21 
 
 
282 aa  211  7.999999999999999e-54  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_1946  AraC family transcriptional regulator  37.55 
 
 
282 aa  211  9e-54  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.609227  n/a   
 
 
-
 
NC_011663  Sbal223_0891  transcriptional regulator, AraC family  41.87 
 
 
280 aa  211  1e-53  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_5050  AraC family transcriptional regulator  46.56 
 
 
293 aa  211  1e-53  Caulobacter sp. K31  Bacteria  normal  normal  0.148414 
 
 
-
 
NC_009052  Sbal_3470  methylated-DNA--protein-cysteine methyltransferase  41.57 
 
 
280 aa  210  2e-53  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_0866  methylated-DNA--protein-cysteine methyltransferase  41.57 
 
 
280 aa  210  2e-53  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_1519  methylated-DNA--protein-cysteine methyltransferase  40.39 
 
 
280 aa  209  3e-53  Marinomonas sp. MWYL1  Bacteria  normal  0.0758947  normal  0.0152511 
 
 
-
 
NC_013161  Cyan8802_2395  transcriptional regulator, AraC family  40.23 
 
 
300 aa  209  5e-53  Cyanothece sp. PCC 8802  Bacteria  normal  0.374624  normal 
 
 
-
 
NC_008577  Shewana3_2691  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  40.27 
 
 
297 aa  208  7e-53  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_1493  methylated-DNA--protein-cysteine methyltransferase  40.37 
 
 
276 aa  207  2e-52  Shewanella denitrificans OS217  Bacteria  decreased coverage  0.0000000302117  n/a   
 
 
-
 
NC_011726  PCC8801_2345  transcriptional regulator, AraC family  41.37 
 
 
302 aa  206  3e-52  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_010551  BamMC406_3089  AraC family transcriptional regulator  37.23 
 
 
363 aa  178  1e-43  Burkholderia ambifaria MC40-6  Bacteria  hitchhiker  0.000000381417  hitchhiker  0.0021619 
 
 
-
 
NC_008390  Bamb_3205  AraC family transcriptional regulator  37.23 
 
 
380 aa  177  2e-43  Burkholderia ambifaria AMMD  Bacteria  hitchhiker  0.000040374  n/a   
 
 
-
 
NC_010084  Bmul_3145  AraC family transcriptional regulator  36.88 
 
 
365 aa  174  9.999999999999999e-43  Burkholderia multivorans ATCC 17616  Bacteria  hitchhiker  0.0000000198948  unclonable  0.00000000000612342 
 
 
-
 
NC_007510  Bcep18194_A6508  bifunctional DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  36.86 
 
 
363 aa  172  5e-42  Burkholderia sp. 383  Bacteria  hitchhiker  0.000000013299  normal  0.0946299 
 
 
-
 
NC_009074  BURPS668_0116  regulatory protein ada (regulatory protein of adaptative response)  35.56 
 
 
364 aa  169  5e-41  Burkholderia pseudomallei 668  Bacteria  hitchhiker  0.00000000327978  n/a   
 
 
-
 
NC_007434  BURPS1710b_0322  O6-methylguanine-DNA methyltransferase  35.56 
 
 
364 aa  169  5e-41  Burkholderia pseudomallei 1710b  Bacteria  unclonable  0.00000000161378  n/a   
 
 
-
 
NC_006348  BMA0115  ADA regulatory protein  35.56 
 
 
364 aa  169  6e-41  Burkholderia mallei ATCC 23344  Bacteria  hitchhiker  0.0000393468  n/a   
 
 
-
 
NC_008836  BMA10229_A2249  ADA regulatory protein  35.56 
 
 
364 aa  169  6e-41  Burkholderia mallei NCTC 10229  Bacteria  hitchhiker  0.000000255362  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2836  ADA regulatory protein  35.56 
 
 
364 aa  169  6e-41  Burkholderia mallei SAVP1  Bacteria  hitchhiker  0.00000000000994394  n/a   
 
 
-
 
NC_009076  BURPS1106A_0132  ADA regulatory protein  35.56 
 
 
364 aa  169  6e-41  Burkholderia pseudomallei 1106a  Bacteria  normal  0.0622499  n/a   
 
 
-
 
NC_009080  BMA10247_2323  ADA regulatory protein  35.56 
 
 
364 aa  169  6e-41  Burkholderia mallei NCTC 10247  Bacteria  decreased coverage  0.00000161007  n/a   
 
 
-
 
NC_009080  BMA10247_2300  regulatory protein ada (regulatory protein of adaptative response)  35.56 
 
 
364 aa  169  6e-41  Burkholderia mallei NCTC 10247  Bacteria  hitchhiker  0.000121844  n/a   
 
 
-
 
NC_007651  BTH_I0085  ADA regulatory protein  35.56 
 
 
364 aa  168  9e-41  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.000000000911419  n/a   
 
 
-
 
NC_010508  Bcenmc03_3171  AraC family transcriptional regulator  35.16 
 
 
363 aa  167  2e-40  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.0000000719173  decreased coverage  0.000000135353 
 
 
-
 
NC_007951  Bxe_A4482  AraC family transcriptional regulator  35.82 
 
 
401 aa  167  2e-40  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.00000000221745  unclonable  0.0000015212 
 
 
-
 
NC_010622  Bphy_3088  AraC family transcriptional regulator  35.16 
 
 
376 aa  166  5e-40  Burkholderia phymatum STM815  Bacteria  hitchhiker  0.000000118536  hitchhiker  0.0000000000000798373 
 
 
-
 
NC_008060  Bcen_2539  AraC family transcriptional regulator  35.16 
 
 
363 aa  166  5e-40  Burkholderia cenocepacia AU 1054  Bacteria  hitchhiker  0.0000057895  n/a   
 
 
-
 
NC_008542  Bcen2424_3152  AraC family transcriptional regulator  35.16 
 
 
363 aa  166  5e-40  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.00000475647  n/a   
 
 
-
 
NC_010681  Bphyt_3955  transcriptional regulator, AraC family  34.7 
 
 
391 aa  164  2.0000000000000002e-39  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.0000156521  normal  0.830157 
 
 
-
 
NC_008048  Sala_2282  AraC family transcriptional regulator  37.09 
 
 
345 aa  158  7e-38  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_1042  AraC family transcriptional regulator  38.99 
 
 
370 aa  155  8e-37  Methylobacterium sp. 4-46  Bacteria  normal  0.826547  normal 
 
 
-
 
NC_014212  Mesil_0991  methylated-DNA/protein- cysteinemethyltransferase  34.21 
 
 
295 aa  153  2e-36  Meiothermus silvanus DSM 9946  Bacteria  normal  0.275505  normal  0.265908 
 
 
-
 
NC_007794  Saro_2396  transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase  35.74 
 
 
343 aa  153  2.9999999999999998e-36  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0383  ada regulatory protein  34.06 
 
 
361 aa  151  1e-35  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR0368  ada regulatory protein  34.06 
 
 
361 aa  150  3e-35  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3365  methylated-DNA-[protein]-cysteine S-methyltransferase  32.85 
 
 
384 aa  150  3e-35  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_2874  methylated-DNA--protein-cysteine methyltransferase  47.27 
 
 
198 aa  150  3e-35  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.396011 
 
 
-
 
NC_007510  Bcep18194_A4931  AraC family transcriptional regulator  33.46 
 
 
354 aa  149  6e-35  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_2956  methylated-DNA--protein-cysteine methyltransferase  35.94 
 
 
303 aa  148  8e-35  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_0501  transcriptional regulator, AraC family  35.06 
 
 
374 aa  146  3e-34  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.399439  n/a   
 
 
-
 
NC_004578  PSPTO_3595  Ada regulatory protein  32.26 
 
 
368 aa  145  1e-33  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_4835  transcriptional regulator, AraC family  35.51 
 
 
360 aa  143  3e-33  Methylobacterium populi BJ001  Bacteria  normal  0.0179003  normal  0.379038 
 
 
-
 
NC_009667  Oant_0476  methylated-DNA--protein-cysteine methyltransferase  34.65 
 
 
361 aa  142  6e-33  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_0739  methylated-DNA--protein-cysteine methyltransferase  31.25 
 
 
350 aa  140  1.9999999999999998e-32  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_2118  AraC family transcriptional regulator  32.85 
 
 
366 aa  140  1.9999999999999998e-32  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.0669009  normal 
 
 
-
 
NC_008463  PA14_37190  O6-methylguanine-DNA methyltransferase  32.33 
 
 
358 aa  139  4.999999999999999e-32  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0320795  normal 
 
 
-
 
NC_003295  RSc2570  bifunctional methylated-DNA--protein-cysteine methyltransferase/O-6-methylguanine-DNA transcription regulator  34.36 
 
 
360 aa  139  6e-32  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_0793  transcriptional regulator, AraC family  32.13 
 
 
376 aa  139  7e-32  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0138198  n/a   
 
 
-
 
NC_010322  PputGB1_0740  AraC family transcriptional regulator  31.39 
 
 
350 aa  138  7.999999999999999e-32  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0706  adaptive response regulator protein  30.88 
 
 
350 aa  137  2e-31  Pseudomonas putida KT2440  Bacteria  normal  0.998073  normal 
 
 
-
 
NC_011884  Cyan7425_4855  methylated-DNA/protein-cysteine methyltransferase  40.53 
 
 
207 aa  137  2e-31  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_4239  methylated-DNA--protein-cysteine methyltransferase  32.94 
 
 
353 aa  136  4e-31  Paracoccus denitrificans PD1222  Bacteria  normal  0.577797  normal  0.120321 
 
 
-
 
NC_010682  Rpic_2856  transcriptional regulator, AraC family  31.05 
 
 
361 aa  135  8e-31  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_1027  transcriptional regulator, AraC family  31.07 
 
 
359 aa  135  8e-31  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_3190  O6-methylguanine-DNA methyltransferase  31.84 
 
 
358 aa  135  9e-31  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_46280  Methylated-DNA--(protein)-cysteine S-methyltransferase  36.8 
 
 
355 aa  134  1.9999999999999998e-30  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_2772  transcriptional regulator, AraC family  32.14 
 
 
313 aa  133  3e-30  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.353019  normal 
 
 
-
 
NC_009439  Pmen_0834  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  32.27 
 
 
340 aa  133  3e-30  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_2938  AraC family transcriptional regulator  32.05 
 
 
357 aa  132  7.999999999999999e-30  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_2450  transcriptional regulator, AraC family  32.05 
 
 
361 aa  130  2.0000000000000002e-29  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_2793  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  30.91 
 
 
354 aa  129  6e-29  Enterobacter sp. 638  Bacteria  normal  0.986339  normal 
 
 
-
 
NC_009708  YpsIP31758_0082  ada regulatory protein  31.14 
 
 
354 aa  129  6e-29  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_4687  transcriptional regulator, AraC family  34.7 
 
 
361 aa  129  7.000000000000001e-29  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_3765  bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase  30.38 
 
 
354 aa  128  8.000000000000001e-29  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_4318  methylated-DNA--protein-cysteine methyltransferase  34.7 
 
 
380 aa  128  1.0000000000000001e-28  Methylobacterium extorquens PA1  Bacteria  normal  0.155933  normal 
 
 
-
 
NC_011365  Gdia_1536  transcriptional regulator, AraC family  31.58 
 
 
366 aa  128  1.0000000000000001e-28  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.26366 
 
 
-
 
NC_007604  Synpcc7942_0149  methylated-DNA--protein-cysteine methyltransferase  41.51 
 
 
185 aa  127  2.0000000000000002e-28  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_4134  AraC family transcriptional regulator  30.51 
 
 
354 aa  126  4.0000000000000003e-28  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.0607807  n/a   
 
 
-
 
NC_011666  Msil_1307  transcriptional regulator, AraC family  30.83 
 
 
357 aa  125  7e-28  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_009727  CBUD_0849  ADA regulatory protein  33.06 
 
 
351 aa  125  7e-28  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
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