More than 300 homologs were found in PanDaTox collection
for query gene Nham_0160 on replicon NC_007964
Organism: Nitrobacter hamburgensis X14



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007964  Nham_0160  AraC family transcriptional regulator  100 
 
 
314 aa  638    Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_0203  methylated-DNA-(protein)-cysteine S-methyltransferase  83.12 
 
 
314 aa  518  1e-146  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.661415  normal  0.947991 
 
 
-
 
NC_007925  RPC_0337  AraC family transcriptional regulator  78.34 
 
 
310 aa  501  1e-141  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0199  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  77.15 
 
 
299 aa  476  1e-133  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0437  AraC family transcriptional regulator  76.53 
 
 
298 aa  468  1.0000000000000001e-131  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.988834 
 
 
-
 
NC_007958  RPD_0383  methylated-DNA--protein-cysteine methyltransferase  72.76 
 
 
310 aa  468  1.0000000000000001e-131  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0344  transcriptional regulator, AraC family  72.61 
 
 
310 aa  466  9.999999999999999e-131  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.251255  n/a   
 
 
-
 
NC_009720  Xaut_2813  methylated-DNA--protein-cysteine methyltransferase  69.93 
 
 
309 aa  379  1e-104  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.305284 
 
 
-
 
NC_009636  Smed_3373  methylated-DNA--protein-cysteine methyltransferase  62.27 
 
 
290 aa  375  1e-103  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_3569  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  63.74 
 
 
294 aa  369  1e-101  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_3845  methylated-DNA--protein- cysteinemethyltransferase  58.14 
 
 
295 aa  363  3e-99  Agrobacterium vitis S4  Bacteria  normal  0.80027  n/a   
 
 
-
 
NC_012850  Rleg_3739  methylated-DNA/protein-cysteine methyltransferase  61.25 
 
 
290 aa  360  2e-98  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3439  methylated-DNA/protein-cysteine methyltransferase  59.04 
 
 
290 aa  352  5.9999999999999994e-96  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_0721  methylated-DNA/protein-cysteine methyltransferase  45.55 
 
 
279 aa  276  4e-73  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_1575  methylated-DNA--protein-cysteine methyltransferase  42.6 
 
 
282 aa  257  2e-67  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_5050  AraC family transcriptional regulator  47.78 
 
 
293 aa  256  2e-67  Caulobacter sp. K31  Bacteria  normal  normal  0.148414 
 
 
-
 
NC_008347  Mmar10_2993  AraC family transcriptional regulator  47.1 
 
 
282 aa  257  2e-67  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2345  transcriptional regulator, AraC family  41.64 
 
 
302 aa  248  1e-64  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_2395  transcriptional regulator, AraC family  41.26 
 
 
300 aa  244  9.999999999999999e-64  Cyanothece sp. PCC 8802  Bacteria  normal  0.374624  normal 
 
 
-
 
NC_007912  Sde_3879  transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase  42.16 
 
 
293 aa  243  3e-63  Saccharophagus degradans 2-40  Bacteria  normal  0.612619  normal  0.1278 
 
 
-
 
NC_013132  Cpin_2299  transcriptional regulator, AraC family  41.07 
 
 
284 aa  241  7.999999999999999e-63  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.015219  normal 
 
 
-
 
NC_009428  Rsph17025_0196  methylated-DNA--protein-cysteine methyltransferase  47.97 
 
 
282 aa  241  1e-62  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_3024  ADA regulatory protein  49.26 
 
 
287 aa  240  2e-62  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.697686  normal  0.421668 
 
 
-
 
NC_007802  Jann_1668  transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase  44.74 
 
 
267 aa  238  1e-61  Jannaschia sp. CCS1  Bacteria  normal  0.490998  normal 
 
 
-
 
NC_013037  Dfer_0549  transcriptional regulator, AraC family  40 
 
 
289 aa  237  2e-61  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.587181 
 
 
-
 
NC_008255  CHU_3799  transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase  39.78 
 
 
282 aa  237  2e-61  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.198911 
 
 
-
 
NC_013730  Slin_0565  transcriptional regulator, AraC family  43.01 
 
 
286 aa  236  5.0000000000000005e-61  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1032  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  46.13 
 
 
282 aa  233  2.0000000000000002e-60  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.259585  n/a   
 
 
-
 
NC_009049  Rsph17029_2693  methylated-DNA--protein-cysteine methyltransferase  45.76 
 
 
282 aa  232  8.000000000000001e-60  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.116111 
 
 
-
 
NC_012912  Dd1591_0948  transcriptional regulator, AraC family  41.88 
 
 
275 aa  231  1e-59  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_0314  methylated-DNA/protein-cysteine methyltransferase  45.34 
 
 
251 aa  229  5e-59  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.135594 
 
 
-
 
NC_009052  Sbal_3470  methylated-DNA--protein-cysteine methyltransferase  40.22 
 
 
280 aa  224  1e-57  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1493  methylated-DNA--protein-cysteine methyltransferase  41.33 
 
 
276 aa  224  1e-57  Shewanella denitrificans OS217  Bacteria  decreased coverage  0.0000000302117  n/a   
 
 
-
 
NC_011663  Sbal223_0891  transcriptional regulator, AraC family  40.59 
 
 
280 aa  224  1e-57  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_3353  methylated-DNA--protein-cysteine methyltransferase  38.52 
 
 
282 aa  224  2e-57  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_0866  methylated-DNA--protein-cysteine methyltransferase  40.22 
 
 
280 aa  223  3e-57  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_2691  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  40.21 
 
 
297 aa  223  3e-57  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_2450  AraC family transcriptional regulator  44.12 
 
 
283 aa  217  2e-55  Ruegeria sp. TM1040  Bacteria  normal  0.416405  normal  0.151746 
 
 
-
 
NC_007575  Suden_1946  AraC family transcriptional regulator  34.41 
 
 
282 aa  209  6e-53  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.609227  n/a   
 
 
-
 
NC_009654  Mmwyl1_1519  methylated-DNA--protein-cysteine methyltransferase  36.9 
 
 
280 aa  205  8e-52  Marinomonas sp. MWYL1  Bacteria  normal  0.0758947  normal  0.0152511 
 
 
-
 
NC_007951  Bxe_A4482  AraC family transcriptional regulator  35.61 
 
 
401 aa  175  9.999999999999999e-43  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.00000000221745  unclonable  0.0000015212 
 
 
-
 
NC_010622  Bphy_3088  AraC family transcriptional regulator  34.67 
 
 
376 aa  172  7.999999999999999e-42  Burkholderia phymatum STM815  Bacteria  hitchhiker  0.000000118536  hitchhiker  0.0000000000000798373 
 
 
-
 
NC_010681  Bphyt_3955  transcriptional regulator, AraC family  35.25 
 
 
391 aa  171  2e-41  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.0000156521  normal  0.830157 
 
 
-
 
NC_007651  BTH_I0085  ADA regulatory protein  34.88 
 
 
364 aa  169  5e-41  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.000000000911419  n/a   
 
 
-
 
NC_009074  BURPS668_0116  regulatory protein ada (regulatory protein of adaptative response)  34.29 
 
 
364 aa  169  8e-41  Burkholderia pseudomallei 668  Bacteria  hitchhiker  0.00000000327978  n/a   
 
 
-
 
NC_007434  BURPS1710b_0322  O6-methylguanine-DNA methyltransferase  34.29 
 
 
364 aa  168  9e-41  Burkholderia pseudomallei 1710b  Bacteria  unclonable  0.00000000161378  n/a   
 
 
-
 
NC_009080  BMA10247_2300  regulatory protein ada (regulatory protein of adaptative response)  33.93 
 
 
364 aa  168  1e-40  Burkholderia mallei NCTC 10247  Bacteria  hitchhiker  0.000121844  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2836  ADA regulatory protein  33.93 
 
 
364 aa  168  1e-40  Burkholderia mallei SAVP1  Bacteria  hitchhiker  0.00000000000994394  n/a   
 
 
-
 
NC_008836  BMA10229_A2249  ADA regulatory protein  33.93 
 
 
364 aa  168  1e-40  Burkholderia mallei NCTC 10229  Bacteria  hitchhiker  0.000000255362  n/a   
 
 
-
 
NC_006348  BMA0115  ADA regulatory protein  33.93 
 
 
364 aa  168  1e-40  Burkholderia mallei ATCC 23344  Bacteria  hitchhiker  0.0000393468  n/a   
 
 
-
 
NC_009080  BMA10247_2323  ADA regulatory protein  33.93 
 
 
364 aa  168  1e-40  Burkholderia mallei NCTC 10247  Bacteria  decreased coverage  0.00000161007  n/a   
 
 
-
 
NC_009076  BURPS1106A_0132  ADA regulatory protein  33.93 
 
 
364 aa  168  1e-40  Burkholderia pseudomallei 1106a  Bacteria  normal  0.0622499  n/a   
 
 
-
 
NC_008687  Pden_4239  methylated-DNA--protein-cysteine methyltransferase  36.08 
 
 
353 aa  163  4.0000000000000004e-39  Paracoccus denitrificans PD1222  Bacteria  normal  0.577797  normal  0.120321 
 
 
-
 
NC_008390  Bamb_3205  AraC family transcriptional regulator  35.61 
 
 
380 aa  162  5.0000000000000005e-39  Burkholderia ambifaria AMMD  Bacteria  hitchhiker  0.000040374  n/a   
 
 
-
 
NC_010084  Bmul_3145  AraC family transcriptional regulator  35.64 
 
 
365 aa  162  6e-39  Burkholderia multivorans ATCC 17616  Bacteria  hitchhiker  0.0000000198948  unclonable  0.00000000000612342 
 
 
-
 
NC_014212  Mesil_0991  methylated-DNA/protein- cysteinemethyltransferase  34.77 
 
 
295 aa  162  7e-39  Meiothermus silvanus DSM 9946  Bacteria  normal  0.275505  normal  0.265908 
 
 
-
 
NC_007510  Bcep18194_A6508  bifunctional DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  34.17 
 
 
363 aa  162  8.000000000000001e-39  Burkholderia sp. 383  Bacteria  hitchhiker  0.000000013299  normal  0.0946299 
 
 
-
 
NC_010551  BamMC406_3089  AraC family transcriptional regulator  35.25 
 
 
363 aa  161  2e-38  Burkholderia ambifaria MC40-6  Bacteria  hitchhiker  0.000000381417  hitchhiker  0.0021619 
 
 
-
 
NC_011071  Smal_2772  transcriptional regulator, AraC family  33.21 
 
 
313 aa  160  3e-38  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.353019  normal 
 
 
-
 
NC_010508  Bcenmc03_3171  AraC family transcriptional regulator  33.57 
 
 
363 aa  158  1e-37  Burkholderia cenocepacia MC0-3  Bacteria  hitchhiker  0.0000000719173  decreased coverage  0.000000135353 
 
 
-
 
NC_010511  M446_1042  AraC family transcriptional regulator  34.93 
 
 
370 aa  158  1e-37  Methylobacterium sp. 4-46  Bacteria  normal  0.826547  normal 
 
 
-
 
NC_008060  Bcen_2539  AraC family transcriptional regulator  33.57 
 
 
363 aa  157  2e-37  Burkholderia cenocepacia AU 1054  Bacteria  hitchhiker  0.0000057895  n/a   
 
 
-
 
NC_008542  Bcen2424_3152  AraC family transcriptional regulator  33.57 
 
 
363 aa  157  2e-37  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.00000475647  n/a   
 
 
-
 
NC_008048  Sala_2282  AraC family transcriptional regulator  36.13 
 
 
345 aa  152  5.9999999999999996e-36  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_4835  transcriptional regulator, AraC family  34.26 
 
 
360 aa  151  1e-35  Methylobacterium populi BJ001  Bacteria  normal  0.0179003  normal  0.379038 
 
 
-
 
NC_011662  Tmz1t_0061  methylated-DNA/protein-cysteine methyltransferase  34.34 
 
 
292 aa  150  3e-35  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_1536  transcriptional regulator, AraC family  33.99 
 
 
366 aa  149  8e-35  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.26366 
 
 
-
 
NC_011894  Mnod_0501  transcriptional regulator, AraC family  32.53 
 
 
374 aa  148  1.0000000000000001e-34  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.399439  n/a   
 
 
-
 
NC_011884  Cyan7425_4855  methylated-DNA/protein-cysteine methyltransferase  39.88 
 
 
207 aa  147  2.0000000000000003e-34  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_0476  methylated-DNA--protein-cysteine methyltransferase  32.17 
 
 
361 aa  147  3e-34  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_2856  transcriptional regulator, AraC family  32.81 
 
 
361 aa  144  2e-33  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_1950  transcriptional regulator, AraC family  32.78 
 
 
338 aa  144  3e-33  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_012856  Rpic12D_2450  transcriptional regulator, AraC family  32.42 
 
 
361 aa  143  4e-33  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_3190  O6-methylguanine-DNA methyltransferase  32.95 
 
 
358 aa  143  4e-33  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc2570  bifunctional methylated-DNA--protein-cysteine methyltransferase/O-6-methylguanine-DNA transcription regulator  34.24 
 
 
360 aa  142  5e-33  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_2396  transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase  34.78 
 
 
343 aa  142  8e-33  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1027  transcriptional regulator, AraC family  32.72 
 
 
359 aa  140  1.9999999999999998e-32  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_37190  O6-methylguanine-DNA methyltransferase  32.03 
 
 
358 aa  140  1.9999999999999998e-32  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0320795  normal 
 
 
-
 
NC_004578  PSPTO_3595  Ada regulatory protein  30.47 
 
 
368 aa  139  3.9999999999999997e-32  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_0834  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  33.71 
 
 
340 aa  139  4.999999999999999e-32  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009505  BOV_0383  ada regulatory protein  30.8 
 
 
361 aa  139  4.999999999999999e-32  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0793  transcriptional regulator, AraC family  31.1 
 
 
376 aa  139  6e-32  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0138198  n/a   
 
 
-
 
NC_007005  Psyr_3365  methylated-DNA-[protein]-cysteine S-methyltransferase  29.86 
 
 
384 aa  139  7.999999999999999e-32  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR0368  ada regulatory protein  30.8 
 
 
361 aa  138  1e-31  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_0739  methylated-DNA--protein-cysteine methyltransferase  29.17 
 
 
350 aa  137  2e-31  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_1307  transcriptional regulator, AraC family  30.85 
 
 
357 aa  136  4e-31  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_009511  Swit_1127  DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada  34.39 
 
 
351 aa  136  5e-31  Sphingomonas wittichii RW1  Bacteria  normal  0.836162  normal 
 
 
-
 
NC_002947  PP_0706  adaptive response regulator protein  29.17 
 
 
350 aa  136  6.0000000000000005e-31  Pseudomonas putida KT2440  Bacteria  normal  0.998073  normal 
 
 
-
 
NC_008740  Maqu_2956  methylated-DNA--protein-cysteine methyltransferase  31.44 
 
 
303 aa  135  8e-31  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02140  fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase  31.37 
 
 
354 aa  134  9.999999999999999e-31  Escherichia coli BL21(DE3)  Bacteria  normal  0.581837  n/a   
 
 
-
 
NC_012892  B21_02099  hypothetical protein  31.37 
 
 
354 aa  134  9.999999999999999e-31  Escherichia coli BL21  Bacteria  normal  0.592554  n/a   
 
 
-
 
NC_010465  YPK_4134  AraC family transcriptional regulator  30.36 
 
 
354 aa  134  9.999999999999999e-31  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.0607807  n/a   
 
 
-
 
NC_010501  PputW619_4477  AraC family transcriptional regulator  31.07 
 
 
350 aa  134  1.9999999999999998e-30  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0740  AraC family transcriptional regulator  30.08 
 
 
350 aa  134  1.9999999999999998e-30  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_2512  regulatory protein Ada  28.85 
 
 
354 aa  134  1.9999999999999998e-30  Escherichia coli E24377A  Bacteria  normal  0.0107303  n/a   
 
 
-
 
NC_010505  Mrad2831_3551  AraC family transcriptional regulator  35.09 
 
 
369 aa  134  1.9999999999999998e-30  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0783013  normal  0.874169 
 
 
-
 
CP001637  EcDH1_1445  transcriptional regulator, AraC family  30.98 
 
 
354 aa  134  3e-30  Escherichia coli DH1  Bacteria  normal  0.29559  n/a   
 
 
-
 
NC_009800  EcHS_A2352  regulatory protein Ada  31.37 
 
 
354 aa  133  3e-30  Escherichia coli HS  Bacteria  normal  0.970088  n/a   
 
 
-
 
NC_010658  SbBS512_E0727  regulatory protein Ada  30.71 
 
 
354 aa  133  3e-30  Shigella boydii CDC 3083-94  Bacteria  normal  0.166972  n/a   
 
 
-
 
NC_010172  Mext_4318  methylated-DNA--protein-cysteine methyltransferase  34.02 
 
 
380 aa  134  3e-30  Methylobacterium extorquens PA1  Bacteria  normal  0.155933  normal 
 
 
-
 
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