More than 300 homologs were found in PanDaTox collection
for query gene RPD_2198 on replicon NC_007958
Organism: Rhodopseudomonas palustris BisB5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_0668  putative acyl-CoA dehydrogenase  81.27 
 
 
379 aa  646    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.11454 
 
 
-
 
NC_007778  RPB_3267  Acyl-CoA dehydrogenase-like  95.51 
 
 
379 aa  754    Rhodopseudomonas palustris HaA2  Bacteria  normal  0.691288  normal  0.607013 
 
 
-
 
NC_011004  Rpal_2429  acyl-CoA dehydrogenase domain protein  92.61 
 
 
382 aa  729    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.62219  n/a   
 
 
-
 
NC_007958  RPD_2198  acyl-CoA dehydrogenase-like  100 
 
 
379 aa  781    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.583783 
 
 
-
 
NC_009075  BURPS668_A2926  acyl-CoA dehydrogenase  64.4 
 
 
390 aa  501  1e-141  Burkholderia pseudomallei 668  Bacteria  normal  0.532316  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2771  acyl-CoA dehydrogenase  64.4 
 
 
390 aa  501  1e-141  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1147  acyl-CoA dehydrogenase  64.4 
 
 
390 aa  501  1e-141  Burkholderia pseudomallei 1710b  Bacteria  normal  0.799274  n/a   
 
 
-
 
NC_012856  Rpic12D_0111  acyl-CoA dehydrogenase domain protein  65.05 
 
 
384 aa  502  1e-141  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_0104  acyl-CoA dehydrogenase domain protein  64.78 
 
 
384 aa  499  1e-140  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B5206  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal  63.93 
 
 
387 aa  491  9.999999999999999e-139  Ralstonia eutropha JMP134  Bacteria  normal  0.652072  n/a   
 
 
-
 
NC_007650  BTH_II0292  acyl-CoA dehydrogenase  63.61 
 
 
390 aa  489  1e-137  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_2210  acyl-CoA dehydrogenase domain-containing protein  60.74 
 
 
382 aa  471  1e-132  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.766307 
 
 
-
 
NC_007908  Rfer_3506  acyl-CoA dehydrogenase-like  57.87 
 
 
388 aa  432  1e-120  Rhodoferax ferrireducens T118  Bacteria  normal  0.906324  n/a   
 
 
-
 
NC_008048  Sala_2313  acyl-CoA dehydrogenase-like protein  57.98 
 
 
391 aa  410  1e-113  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2640  acyl-CoA dehydrogenase domain-containing protein  52.93 
 
 
382 aa  398  9.999999999999999e-111  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_3798  putative acyl-CoA dehydrogenase  52.13 
 
 
382 aa  391  1e-108  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_44590  putative acyl-CoA dehydrogenase  51.6 
 
 
382 aa  387  1e-106  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.115887 
 
 
-
 
NC_009943  Dole_0626  acyl-CoA dehydrogenase domain-containing protein  51.36 
 
 
386 aa  382  1e-105  Desulfococcus oleovorans Hxd3  Bacteria  decreased coverage  0.000000265202  n/a   
 
 
-
 
NC_007492  Pfl01_1809  Acyl-CoA dehydrogenase-like  52.66 
 
 
382 aa  383  1e-105  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_3438  acyl-CoA dehydrogenase domain-containing protein  49.21 
 
 
379 aa  379  1e-104  Marinobacter aquaeolei VT8  Bacteria  normal  0.0342749  n/a   
 
 
-
 
NC_009338  Mflv_4612  acyl-CoA dehydrogenase domain-containing protein  46.81 
 
 
392 aa  345  8e-94  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3193  acyl-CoA dehydrogenase domain-containing protein  47.21 
 
 
399 aa  337  2.9999999999999997e-91  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_3243  acyl-CoA dehydrogenase domain-containing protein  47.21 
 
 
399 aa  336  5e-91  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_3181  acyl-CoA dehydrogenase-like protein  47.21 
 
 
399 aa  336  5e-91  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_16500  acyl-CoA dehydrogenase  46.7 
 
 
384 aa  326  5e-88  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_3830  acyl-CoA dehydrogenase domain protein  45.67 
 
 
386 aa  324  1e-87  Gordonia bronchialis DSM 43247  Bacteria  normal  0.494815  n/a   
 
 
-
 
NC_013131  Caci_4432  acyl-CoA dehydrogenase domain protein  44.5 
 
 
387 aa  321  9.999999999999999e-87  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0429863 
 
 
-
 
NC_008699  Noca_4554  acyl-CoA dehydrogenase domain-containing protein  46.32 
 
 
386 aa  318  7e-86  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_4326  acyl-CoA dehydrogenase domain-containing protein  44.79 
 
 
388 aa  318  1e-85  Salinispora tropica CNB-440  Bacteria  normal  normal  0.0122368 
 
 
-
 
NC_009953  Sare_4766  acyl-CoA dehydrogenase domain-containing protein  44.13 
 
 
394 aa  318  1e-85  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.0000278675 
 
 
-
 
NC_008726  Mvan_4847  acyl-CoA dehydrogenase domain-containing protein  46.86 
 
 
386 aa  317  2e-85  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.258708 
 
 
-
 
BN001307  ANIA_01699  acyl-CoA dehydrogenase, putative (AFU_orthologue; AFUA_4G08490)  43.54 
 
 
564 aa  315  9.999999999999999e-85  Aspergillus nidulans FGSC A4  Eukaryota  normal  normal  0.0281763 
 
 
-
 
NC_013739  Cwoe_1590  acyl-CoA dehydrogenase domain protein  41.73 
 
 
396 aa  312  5.999999999999999e-84  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.663907 
 
 
-
 
NC_014158  Tpau_2827  acyl-CoA dehydrogenase domain protein  43.44 
 
 
391 aa  311  1e-83  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.226434  n/a   
 
 
-
 
NC_009675  Anae109_1179  acyl-CoA dehydrogenase domain-containing protein  43.2 
 
 
381 aa  302  5.000000000000001e-81  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.532385 
 
 
-
 
NC_009367  OSTLU_41633  predicted protein  44.05 
 
 
429 aa  302  7.000000000000001e-81  Ostreococcus lucimarinus CCE9901  Eukaryota  normal  normal  0.0953919 
 
 
-
 
NC_009375  OSTLU_36653  predicted protein  44.05 
 
 
429 aa  302  7.000000000000001e-81  Ostreococcus lucimarinus CCE9901  Eukaryota  normal  0.022493  hitchhiker  0.00305491 
 
 
-
 
NC_009565  TBFG_10993  acyl-CoA dehydrogenase fadE13  45.5 
 
 
382 aa  300  2e-80  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.0000447194  normal  0.375388 
 
 
-
 
NC_011145  AnaeK_1192  acyl-CoA dehydrogenase domain protein  41.87 
 
 
385 aa  296  6e-79  Anaeromyxobacter sp. K  Bacteria  normal  0.0644386  n/a   
 
 
-
 
NC_011891  A2cp1_1261  acyl-CoA dehydrogenase domain protein  41.87 
 
 
385 aa  295  6e-79  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.403217  n/a   
 
 
-
 
NC_007760  Adeh_1132  Acyl-CoA dehydrogenase, type 1  41.6 
 
 
385 aa  295  1e-78  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4391  acyl-CoA dehydrogenase domain-containing protein  44.97 
 
 
382 aa  294  2e-78  Mycobacterium sp. KMS  Bacteria  normal  0.224235  normal 
 
 
-
 
NC_008146  Mmcs_4305  acyl-CoA dehydrogenase-like protein  44.97 
 
 
382 aa  294  2e-78  Mycobacterium sp. MCS  Bacteria  normal  0.355626  n/a   
 
 
-
 
NC_009077  Mjls_4685  acyl-CoA dehydrogenase domain-containing protein  44.97 
 
 
382 aa  293  3e-78  Mycobacterium sp. JLS  Bacteria  normal  normal  0.561933 
 
 
-
 
NC_007951  Bxe_A2768  putative acyl-CoA dehydrogenase, long- chain specific  36.77 
 
 
391 aa  277  2e-73  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.466839 
 
 
-
 
NC_009338  Mflv_1884  acyl-CoA dehydrogenase domain-containing protein  43.12 
 
 
382 aa  276  3e-73  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0914316 
 
 
-
 
NC_007950  Bpro_5265  acyl-CoA dehydrogenase-like  37.01 
 
 
381 aa  275  1.0000000000000001e-72  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
BN001305  ANIA_05270  acyl-CoA dehydrogenase (AFU_orthologue; AFUA_2G16630)  39.65 
 
 
425 aa  273  5.000000000000001e-72  Aspergillus nidulans FGSC A4  Eukaryota  normal  0.85359  normal 
 
 
-
 
NC_014230  CA2559_00085  probable acyl-CoA dehydrogenase  36.27 
 
 
386 aa  272  5.000000000000001e-72  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1226  acyl-CoA dehydrogenase domain protein  38.77 
 
 
381 aa  270  2e-71  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_4286  acyl-CoA dehydrogenase domain-containing protein  40.69 
 
 
379 aa  268  2e-70  Frankia sp. EAN1pec  Bacteria  normal  normal  0.330894 
 
 
-
 
NC_009972  Haur_4761  acyl-CoA dehydrogenase domain-containing protein  38.06 
 
 
386 aa  266  5e-70  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2106  acyl-CoA dehydrogenase domain protein  38.77 
 
 
381 aa  266  5e-70  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013510  Tcur_1158  acyl-CoA dehydrogenase domain protein  38.3 
 
 
380 aa  266  5e-70  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2439  acyl-CoA dehydrogenase domain protein  38.5 
 
 
380 aa  265  1e-69  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007492  Pfl01_3948  Acyl-CoA dehydrogenase-like  37.99 
 
 
385 aa  263  4e-69  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.54725  normal 
 
 
-
 
NC_009656  PSPA7_2684  putative acyl-CoA dehydrogenase  38.81 
 
 
375 aa  263  4.999999999999999e-69  Pseudomonas aeruginosa PA7  Bacteria  normal  0.126402  n/a   
 
 
-
 
NC_009338  Mflv_2118  acyl-CoA dehydrogenase domain-containing protein  38.56 
 
 
380 aa  263  4.999999999999999e-69  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.438957 
 
 
-
 
NC_009338  Mflv_4558  acyl-CoA dehydrogenase domain-containing protein  37.57 
 
 
393 aa  262  6e-69  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0623628 
 
 
-
 
NC_008463  PA14_31540  putative acyl-CoA dehydrogenase  38.81 
 
 
375 aa  261  1e-68  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.430124  hitchhiker  0.000095284 
 
 
-
 
NC_014210  Ndas_4164  acyl-CoA dehydrogenase domain protein  38.2 
 
 
380 aa  260  3e-68  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5007  acyl-CoA dehydrogenase  37.2 
 
 
378 aa  259  4e-68  Pseudomonas aeruginosa PA7  Bacteria  normal  0.284133  n/a   
 
 
-
 
NC_010501  PputW619_3455  acyl-CoA dehydrogenase domain-containing protein  38.03 
 
 
375 aa  259  5.0000000000000005e-68  Pseudomonas putida W619  Bacteria  normal  normal  0.129524 
 
 
-
 
NC_007908  Rfer_2817  acyl-CoA dehydrogenase-like  38.52 
 
 
383 aa  259  5.0000000000000005e-68  Rhodoferax ferrireducens T118  Bacteria  normal  0.0246434  n/a   
 
 
-
 
NC_012793  GWCH70_1843  acyl-CoA dehydrogenase domain protein  38.24 
 
 
380 aa  259  5.0000000000000005e-68  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_0898  acyl-CoA dehydrogenase domain-containing protein  37.99 
 
 
379 aa  258  9e-68  Pseudomonas mendocina ymp  Bacteria  normal  0.592416  normal 
 
 
-
 
NC_013757  Gobs_3923  acyl-CoA dehydrogenase domain protein  37.83 
 
 
381 aa  258  1e-67  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_4587  acyl-CoA dehydrogenase domain-containing protein  38.3 
 
 
380 aa  258  1e-67  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B4166  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal  40.37 
 
 
379 aa  257  2e-67  Ralstonia eutropha JMP134  Bacteria  normal  0.503131  n/a   
 
 
-
 
NC_007492  Pfl01_4696  Acyl-CoA dehydrogenase-like  38.26 
 
 
378 aa  257  2e-67  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0700778  normal  0.0611001 
 
 
-
 
NC_009439  Pmen_2037  acyl-CoA dehydrogenase domain-containing protein  37.67 
 
 
375 aa  256  3e-67  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.666233 
 
 
-
 
NC_013743  Htur_2576  acyl-CoA dehydrogenase domain protein  38.24 
 
 
378 aa  256  4e-67  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_007794  Saro_0858  butyryl-CoA dehydrogenase  37.47 
 
 
380 aa  256  4e-67  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.661231  n/a   
 
 
-
 
NC_008146  Mmcs_3740  acyl-CoA dehydrogenase-like protein  37.3 
 
 
382 aa  256  4e-67  Mycobacterium sp. MCS  Bacteria  normal  0.421985  n/a   
 
 
-
 
NC_008705  Mkms_3813  acyl-CoA dehydrogenase domain-containing protein  37.3 
 
 
382 aa  256  4e-67  Mycobacterium sp. KMS  Bacteria  normal  normal  0.285243 
 
 
-
 
NC_008048  Sala_3053  Acyl-CoA dehydrogenase  36.41 
 
 
381 aa  256  5e-67  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.75901 
 
 
-
 
NC_008740  Maqu_2805  acyl-CoA dehydrogenase domain-containing protein  38.03 
 
 
386 aa  256  7e-67  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_3342  acyl-CoA dehydrogenase domain protein  38.89 
 
 
379 aa  255  7e-67  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_5024  putative acyl-CoA dehydrogenase  40.21 
 
 
379 aa  256  7e-67  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00000851023  normal  0.285012 
 
 
-
 
NC_008705  Mkms_4154  acyl-CoA dehydrogenase domain-containing protein  38.03 
 
 
380 aa  254  1.0000000000000001e-66  Mycobacterium sp. KMS  Bacteria  normal  normal  0.815208 
 
 
-
 
NC_009077  Mjls_4308  acyl-CoA dehydrogenase domain-containing protein  38.03 
 
 
380 aa  254  1.0000000000000001e-66  Mycobacterium sp. JLS  Bacteria  normal  0.828452  normal 
 
 
-
 
NC_008146  Mmcs_4078  acyl-CoA dehydrogenase-like protein  38.03 
 
 
380 aa  254  1.0000000000000001e-66  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_3937  acyl-CoA dehydrogenase domain protein  38.38 
 
 
385 aa  254  1.0000000000000001e-66  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.818683  n/a   
 
 
-
 
NC_009077  Mjls_3752  acyl-CoA dehydrogenase domain-containing protein  36.77 
 
 
382 aa  254  2.0000000000000002e-66  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_3014  acyl-CoA dehydrogenase-like  36.62 
 
 
389 aa  253  4.0000000000000004e-66  Polaromonas sp. JS666  Bacteria  normal  0.51583  normal  0.368309 
 
 
-
 
NC_007952  Bxe_B2741  putative acyl-CoA dehydrogenase  39.14 
 
 
379 aa  253  5.000000000000001e-66  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2752  acyl-CoA dehydrogenase-like  38.18 
 
 
387 aa  252  7e-66  Rhodoferax ferrireducens T118  Bacteria  normal  0.171242  n/a   
 
 
-
 
NC_007925  RPC_3093  acyl-CoA dehydrogenase-like  36.56 
 
 
382 aa  252  7e-66  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.224598 
 
 
-
 
NC_011830  Dhaf_2863  acyl-CoA dehydrogenase domain protein  38.8 
 
 
380 aa  252  9.000000000000001e-66  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_4102  acyl-CoA dehydrogenase domain-containing protein  38.86 
 
 
388 aa  252  9.000000000000001e-66  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.757866  normal  0.974192 
 
 
-
 
NC_009077  Mjls_4090  acyl-CoA dehydrogenase domain-containing protein  39.68 
 
 
380 aa  251  1e-65  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_3055  acyl-CoA dehydrogenase domain-containing protein  37.03 
 
 
379 aa  251  1e-65  Caulobacter sp. K31  Bacteria  normal  0.350853  normal 
 
 
-
 
NC_011772  BCG9842_B5488  acyl-CoA dehydrogenase  38.07 
 
 
379 aa  251  1e-65  Bacillus cereus G9842  Bacteria  normal  0.270181  hitchhiker  1.62736e-22 
 
 
-
 
NC_008228  Patl_0949  acyl-CoA dehydrogenase-like  36.83 
 
 
385 aa  251  1e-65  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.0416018  n/a   
 
 
-
 
NC_011725  BCB4264_A5464  acyl-CoA dehydrogenase  38.07 
 
 
379 aa  251  2e-65  Bacillus cereus B4264  Bacteria  unclonable  0.0000608426  n/a   
 
 
-
 
NC_009656  PSPA7_2265  putative acyl-CoA dehydrogenase  36.41 
 
 
386 aa  251  2e-65  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_3613  acyl-CoA dehydrogenase domain-containing protein  38.34 
 
 
382 aa  251  2e-65  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_3862  acyl-CoA dehydrogenase domain-containing protein  38.87 
 
 
379 aa  251  2e-65  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2692  acyl-CoA dehydrogenase domain-containing protein  36.94 
 
 
386 aa  251  2e-65  Pseudomonas mendocina ymp  Bacteria  normal  0.0824192  normal  0.331355 
 
 
-
 
NC_008048  Sala_3159  acyl-CoA dehydrogenase-like protein  39.2 
 
 
384 aa  251  2e-65  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
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