| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2037 |
|---|
| Symbol | |
|---|
| ID | 5109771 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 2251264 |
|---|
| End bp | 2252391 |
|---|
| Gene Length | 1128 bp |
|---|
| Protein Length | 375 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640503278 |
|---|
| Product | acyl-CoA dehydrogenase domain-containing protein |
|---|
| Protein accession | YP_001187530 |
|---|
| Protein GI | 146307065 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 0.666233 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCCCA ACGAAGAACA ACTACTGATC CGCGACATGG CCCGCCAGTT CGCCCAGGAA
CGGCTCAAGC CCTTCGCCGC CGACTGGGAC CGCGAGCATC GCTTCCCAGC CGAGGCCATT
GCCGAGATGG GCCAGCTGGG CTTTATGGGC ATGCTGGTGC CGCAGCAATG GGGCGGCGCC
GAGACCGGCC ACCTGGCCTA CGCCATGGCC CTGGAAGAGG TGGCGGCGGG TGATGGTGCC
TGCTCCACCA TCATGAGCGT GCACAACTCG GTGGGCTGCA TGCCGATCCT GAAATACGGC
AGCGAGGCGC AGAAACAGCG CTTTCTCCGC CCGCTGGCCG AAGGCAGCAT GCTCGGCGCC
TTCGCCCTGA CCGAACCGCA GGCCGGCTCC GATGCCAGCG ACCTGCGCAC CCGCGCGCGG
CGCGACGGCG GGCACTACGT GCTGAGCGGC GCCAAGCAGT TCATCACCTC CGGCAGCCAC
GCCGGCATGG TCATCGTCTT CGCCGTCACC GACCCAGGGG CCGGCAAGAA GGGCATCAGC
GCCTTTATCG TACCCACCGA CACGCCGGGG TTCTCGGTGG TGCGGGTGGA GGACAAGCTC
GGCCAGCATG CCTCGGACAC CTGCCAGATC CAGCTCGACG AGGTGCGCAT CCCGGCCGAG
CTGCGTCTGG GCGAGGAGGG CGAGGGTTAC CGCATCGCCC TGGCCAACCT GGAAGGCGGG
CGCATCGGCA TCGCCGCGCA ATCGGTAGGT ATGGCCCGCG CCGCGTTCGA GGCGGCGCGC
GACTACGCCC ACGAGCGGGT CACCTTCGGC AAGCCGATCA TCGAGCACCA GGCGGTGGCC
TTCCGCCTGG CCGACATGGC CACCCAGATC GCCGTGGCGC GGCAGATGGT GCACCACGCC
GCCAGCCTGC GCGAAGCCGG CCTGCCATGC CTGAGCGAGG CCTCGATGGC CAAGCTGTTC
GCCTCGGAGA TGGCCGAGCG GGTGTGCTCC GCGGCGATCC AGACCCTGGG TGGTTACGGC
TACCTCAAGG ACTTCCCGGT CGAGCGCATC TACCGCGACG TGCGTGTGTG CCAGATCTAC
GAAGGCACCA GCGACGTGCA GCGGATGGTC ATCGCGCGCG GTTTGTAG
|
|---|
| Protein sequence | MLPNEEQLLI RDMARQFAQE RLKPFAADWD REHRFPAEAI AEMGQLGFMG MLVPQQWGGA
ETGHLAYAMA LEEVAAGDGA CSTIMSVHNS VGCMPILKYG SEAQKQRFLR PLAEGSMLGA
FALTEPQAGS DASDLRTRAR RDGGHYVLSG AKQFITSGSH AGMVIVFAVT DPGAGKKGIS
AFIVPTDTPG FSVVRVEDKL GQHASDTCQI QLDEVRIPAE LRLGEEGEGY RIALANLEGG
RIGIAAQSVG MARAAFEAAR DYAHERVTFG KPIIEHQAVA FRLADMATQI AVARQMVHHA
ASLREAGLPC LSEASMAKLF ASEMAERVCS AAIQTLGGYG YLKDFPVERI YRDVRVCQIY
EGTSDVQRMV IARGL
|
|---|
| |