| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_5024 |
|---|
| Symbol | |
|---|
| ID | 4041886 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | + |
|---|
| Start bp | 1710000 |
|---|
| End bp | 1711139 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637980445 |
|---|
| Product | putative acyl-CoA dehydrogenase |
|---|
| Protein accession | YP_587155 |
|---|
| Protein GI | 94313946 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00000851023 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.285012 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGTTC AACGTAACGT TTACCGCGAA GATCACGAGA TGTTCCGCGA AACCGCCCGC
CGCTTCCTGG AGCGCGAGTG CCTGCCCAAG CAGGGGGCAT GGGACAAGGC CGGCAAGGTG
GATCGCGAAA CCTGGCTCAA GGCCGGTCGC GAAGGTCTGC TGTGCGTGAC GCTGCCCACA
GAGTACGGTG GTGGTGGCGG TGACTTCGGC CACTCGGCCG TGTTCAACGA AGAACTGGCG
CGCGTCGGTG TCAGCGGCCT GGGCTTCGGC GTGCATTCGG ACATCATCGC CCCGTACATC
GCACGCATCG CCAACGAAGA GCAGAAGCAA CGCTGGCTGC CGAAGGTGTG TTCGGGCGAG
GCCATTCTCG CCATCGGCAT GACCGAACCG GGCACCGGCA GCGACCTGAA GGCCGTACGC
ACCACCGCCA TTCGCGACGG CGACGAGTAC GTGATCAACG GCAGCAAGAC CTTCATCTCG
AACGGCCTGA ACTGCGACCT GATCATCATG GTCTGCAAGA CCGATCCGGC GGCCGGTTCG
CGCGGTGTGA GCCTGATCAT GGTGGAAGCC GACCGAGAGG GTTTCCGCCG TGGGCGCAAG
CTGGAGAAAG TCGGCCAGCA CGCCCAGGAC ACGGCCGAGC TGTTCTTCGA CAACGTGCGG
GTGCCGGTGT CGAACCTGCT GGGAGAGGAA GGCAAGGGCT TCGCCTACCT GATGGGCGAA
CTGCCGCAGG AGCGCCTGTC GATCGCCGTC AGCGCTGCCG CCAAGCTCGA GGCGTGCCTC
GATCACACGA TCGCCTACGT GAAGGAGCGC AAGGCCTTCA ACCAGACCGT CTGGGATTTC
CAGAACACCA AGTTCAAGCT CGCAGACATC AAGGCACAGG CCGTTGCCGT GCGCGTGATG
GTGGACTACT ACCTCAGCGA ACATATCCGC CGTCGCCTCT CCCTTGAAGA AGCCGCCATC
GCGAAGCTCT ACGCCACCGA GGCGCTGGGC AAGGCGCTCG ACGAAATGGT GCAGTTGCAC
GGCGGCTACG GCTACATGCT CGAGTACCCG GTGGCGCGCG CGTTCGCCGA TTCGCGTGTC
ACCCGCATCT ACGGCGGCAC CAGCGAAGTG ATGCGCGACC TCATCTCCCG CAAGCTCTGA
|
|---|
| Protein sequence | MQVQRNVYRE DHEMFRETAR RFLERECLPK QGAWDKAGKV DRETWLKAGR EGLLCVTLPT
EYGGGGGDFG HSAVFNEELA RVGVSGLGFG VHSDIIAPYI ARIANEEQKQ RWLPKVCSGE
AILAIGMTEP GTGSDLKAVR TTAIRDGDEY VINGSKTFIS NGLNCDLIIM VCKTDPAAGS
RGVSLIMVEA DREGFRRGRK LEKVGQHAQD TAELFFDNVR VPVSNLLGEE GKGFAYLMGE
LPQERLSIAV SAAAKLEACL DHTIAYVKER KAFNQTVWDF QNTKFKLADI KAQAVAVRVM
VDYYLSEHIR RRLSLEEAAI AKLYATEALG KALDEMVQLH GGYGYMLEYP VARAFADSRV
TRIYGGTSEV MRDLISRKL
|
|---|
| |