276 homologs were found in PanDaTox collection
for query gene Lcho_2290 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010524  Lcho_2290  histone family protein nucleoid-structuring protein H-NS  100 
 
 
112 aa  226  6e-59  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008825  Mpe_A1370  nucleoid protein H-NS  57.39 
 
 
115 aa  125  3e-28  Methylibium petroleiphilum PM1  Bacteria  normal  0.620152  normal 
 
 
-
 
NC_010622  Bphy_0116  histone family protein nucleoid-structuring protein H-NS  44.25 
 
 
100 aa  85.9  2e-16  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_1136  histone family protein nucleoid-structuring protein H-NS  41.38 
 
 
104 aa  84.7  4e-16  Thauera sp. MZ1T  Bacteria  hitchhiker  0.00265311  n/a   
 
 
-
 
NC_008390  Bamb_0195  histone family protein nucleoid-structuring protein H-NS  44.92 
 
 
97 aa  84  7e-16  Burkholderia ambifaria AMMD  Bacteria  normal  0.750004  n/a   
 
 
-
 
NC_010551  BamMC406_0209  histone family protein nucleoid-structuring protein H-NS  44.92 
 
 
97 aa  84  7e-16  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.726678 
 
 
-
 
NC_008542  Bcen2424_0281  histone family protein nucleoid-structuring protein H-NS  44.07 
 
 
97 aa  82  2e-15  Burkholderia cenocepacia HI2424  Bacteria  normal  0.166699  n/a   
 
 
-
 
NC_008060  Bcen_2825  histone-like nucleoid-structuring protein H-NS  44.07 
 
 
97 aa  82  2e-15  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_0263  histone family protein nucleoid-structuring protein H-NS  44.07 
 
 
97 aa  82  2e-15  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.820493 
 
 
-
 
NC_007510  Bcep18194_A3384  histone-like nucleoid-structuring protein H-NS  43.22 
 
 
97 aa  80.9  5e-15  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_0190  histone family protein nucleoid-structuring protein H-NS  43.22 
 
 
97 aa  80.5  7e-15  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.317548  hitchhiker  1.90695e-08 
 
 
-
 
NC_012791  Vapar_1795  histone family protein nucleoid-structuring protein H-NS  41.88 
 
 
114 aa  79  2e-14  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1636  H-NS histone family protein  43.75 
 
 
97 aa  78.2  4e-14  Burkholderia mallei NCTC 10229  Bacteria  normal  0.741416  n/a   
 
 
-
 
NC_009080  BMA10247_2965  H-NS histone family protein  43.75 
 
 
97 aa  78.2  4e-14  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I3155  H-NS histone family protein  43.75 
 
 
97 aa  78.2  4e-14  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3404  H-NS histone family protein  43.75 
 
 
97 aa  78.2  4e-14  Burkholderia mallei SAVP1  Bacteria  normal  0.237819  n/a   
 
 
-
 
NC_009076  BURPS1106A_3909  H-NS histone family protein  43.75 
 
 
97 aa  78.2  4e-14  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3827  H-NS histone family protein  43.75 
 
 
97 aa  78.2  4e-14  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2905  H-NS histone family protein  43.75 
 
 
97 aa  78.2  4e-14  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0048  H-NS histone family protein  43.75 
 
 
125 aa  77.8  4e-14  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007336  Reut_C6005  histone-like nucleoid-structuring protein H-NS  42.57 
 
 
103 aa  76.6  1e-13  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_2158  histone family protein nucleoid-structuring protein H-NS  41.24 
 
 
96 aa  76.3  2e-13  Delftia acidovorans SPH-1  Bacteria  normal  0.232102  normal  0.811955 
 
 
-
 
NC_003296  RS02604  putative HNS-like transcription regulator protein  38.94 
 
 
102 aa  75.9  2e-13  Ralstonia solanacearum GMI1000  Bacteria  hitchhiker  0.00414449  normal  0.0842767 
 
 
-
 
NC_012857  Rpic12D_4348  histone family protein nucleoid-structuring protein H-NS  40.35 
 
 
102 aa  75.1  3e-13  Ralstonia pickettii 12D  Bacteria  normal  normal  0.513312 
 
 
-
 
NC_010678  Rpic_4238  histone family protein nucleoid-structuring protein H-NS  40.35 
 
 
102 aa  75.1  3e-13  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_3677  histone-like nucleoid-structuring protein H-NS  41.88 
 
 
102 aa  74.7  4e-13  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.166379 
 
 
-
 
NC_011992  Dtpsy_1065  histone family protein nucleoid-structuring protein H-NS  40.21 
 
 
98 aa  73.6  8e-13  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_1144  histone family protein nucleoid-structuring protein H-NS  40.21 
 
 
98 aa  73.6  8e-13  Acidovorax sp. JS42  Bacteria  normal  0.439674  normal  0.582774 
 
 
-
 
NC_007348  Reut_B5596  nucleoid protein H-NS  40.87 
 
 
102 aa  72.8  1e-12  Ralstonia eutropha JMP134  Bacteria  normal  0.16143  n/a   
 
 
-
 
NC_007951  Bxe_A0112  HNS-like transcriptional regulator  39.45 
 
 
100 aa  72.8  2e-12  Burkholderia xenovorans LB400  Bacteria  decreased coverage  9.94611e-15  normal 
 
 
-
 
NC_007951  Bxe_A4321  putative HNS-like transcriptional regulator  44.9 
 
 
100 aa  72.4  2e-12  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_3822  histone family protein nucleoid-structuring protein H-NS  38.53 
 
 
100 aa  72.4  2e-12  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.000137841  normal 
 
 
-
 
NC_010002  Daci_3476  histone family protein nucleoid-structuring protein H-NS  44.71 
 
 
97 aa  71.6  3e-12  Delftia acidovorans SPH-1  Bacteria  normal  0.634664  normal 
 
 
-
 
NC_010681  Bphyt_0398  histone family protein nucleoid-structuring protein H-NS  43.88 
 
 
100 aa  71.6  4e-12  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_3934  histone family protein nucleoid-structuring protein H-NS  42.71 
 
 
91 aa  70.9  6e-12  Delftia acidovorans SPH-1  Bacteria  normal  0.222409  normal  0.184824 
 
 
-
 
NC_010678  Rpic_4798  histone family protein nucleoid-structuring protein H-NS  43.3 
 
 
96 aa  70.1  9e-12  Ralstonia pickettii 12J  Bacteria  normal  0.272454  normal  0.166506 
 
 
-
 
NC_012857  Rpic12D_3721  histone family protein nucleoid-structuring protein H-NS  43.3 
 
 
96 aa  70.1  9e-12  Ralstonia pickettii 12D  Bacteria  decreased coverage  0.00112888  normal  0.513312 
 
 
-
 
NC_007974  Rmet_4935  putative H-NS histon-like DNA-binding protein  35.96 
 
 
104 aa  70.1  9e-12  Cupriavidus metallidurans CH34  Bacteria  normal  0.529231  normal  0.833407 
 
 
-
 
NC_008781  Pnap_3493  histone family protein nucleoid-structuring protein H-NS  36.61 
 
 
113 aa  69.7  1e-11  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.572012  normal  0.600215 
 
 
-
 
NC_003296  RS00711  putative HNS-like transcription regulator protein  43.3 
 
 
96 aa  69.7  1e-11  Ralstonia solanacearum GMI1000  Bacteria  hitchhiker  1.72984e-05  normal 
 
 
-
 
NC_011662  Tmz1t_2060  histone family protein nucleoid-structuring protein H-NS  37.5 
 
 
91 aa  68.9  2e-11  Thauera sp. MZ1T  Bacteria  normal  0.0796579  n/a   
 
 
-
 
NC_012855  Rpic12D_4934  histone family protein nucleoid-structuring protein H-NS  40.18 
 
 
103 aa  68.9  2e-11  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_5562  histone-like nucleoid-structuring protein H-NS  42.42 
 
 
104 aa  68.9  2e-11  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_1150  histone family protein nucleoid-structuring protein H-NS  36.94 
 
 
99 aa  68.6  3e-11  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_0838  histone family protein nucleoid-structuring protein H-NS  40.21 
 
 
94 aa  68.6  3e-11  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_008759  Pnap_4886  histone family protein nucleoid-structuring protein H-NS  37.39 
 
 
114 aa  68.6  3e-11  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.602991  normal 
 
 
-
 
NC_007348  Reut_B4990  histone-like nucleoid-structuring protein H-NS  35.65 
 
 
104 aa  68.6  3e-11  Ralstonia eutropha JMP134  Bacteria  normal  0.0212879  n/a   
 
 
-
 
NC_010623  Bphy_4285  histone family protein nucleoid-structuring protein H-NS  42.11 
 
 
97 aa  65.9  2e-10  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010557  BamMC406_5922  histone family protein nucleoid-structuring protein H-NS  37.11 
 
 
102 aa  65.9  2e-10  Burkholderia ambifaria MC40-6  Bacteria  normal  0.997127  normal  0.678214 
 
 
-
 
NC_010087  Bmul_5767  histone family protein nucleoid-structuring protein H-NS  43.4 
 
 
99 aa  65.1  3e-10  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009074  BURPS668_3862  H-NS histone family protein  33.03 
 
 
98 aa  65.1  3e-10  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1677  H-NS histone family protein  33.03 
 
 
98 aa  65.1  3e-10  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3442  H-NS histone family protein  33.03 
 
 
98 aa  65.1  3e-10  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_3109  H-NS histone family protein  33.03 
 
 
98 aa  65.1  3e-10  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0084  H-NS histone family protein  33.03 
 
 
98 aa  65.1  3e-10  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2867  H-NS histone family protein  33.03 
 
 
98 aa  65.1  3e-10  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3943  H-NS histone family protein  33.03 
 
 
98 aa  65.1  3e-10  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RS02004  putative HNS-like transcription regulator protein  37.11 
 
 
95 aa  64.7  4e-10  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0969964  normal 
 
 
-
 
NC_008392  Bamb_6191  histone family protein nucleoid-structuring protein H-NS  37.37 
 
 
102 aa  64.3  6e-10  Burkholderia ambifaria AMMD  Bacteria  normal  0.299615  normal 
 
 
-
 
NC_008758  Pnap_4578  histone family protein nucleoid-structuring protein H-NS  39.09 
 
 
121 aa  63.9  7e-10  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007509  Bcep18194_C7383  histone-like nucleoid-structuring protein H-NS  37.11 
 
 
102 aa  63.9  7e-10  Burkholderia sp. 383  Bacteria  normal  normal  0.907507 
 
 
-
 
NC_010622  Bphy_2981  histone family protein nucleoid-structuring protein H-NS  38.32 
 
 
100 aa  63.9  8e-10  Burkholderia phymatum STM815  Bacteria  normal  0.207499  decreased coverage  4.17224e-08 
 
 
-
 
NC_010553  BamMC406_6777  histone family protein nucleoid-structuring protein H-NS  41.41 
 
 
99 aa  63.9  8e-10  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_1968  histone family protein nucleoid-structuring protein H-NS  37.36 
 
 
93 aa  63.2  1e-09  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_012849  Rpic12D_5155  histone family protein nucleoid-structuring protein H-NS  37.27 
 
 
97 aa  63.2  1e-09  Ralstonia pickettii 12D  Bacteria  normal  0.336859  normal  0.425922 
 
 
-
 
NC_007509  Bcep18194_C6596  histone-like nucleoid-structuring protein H-NS  39.62 
 
 
96 aa  63.5  1e-09  Burkholderia sp. 383  Bacteria  normal  0.540075  normal 
 
 
-
 
NC_008757  Pnap_4220  histone family protein nucleoid-structuring protein H-NS  32.17 
 
 
135 aa  62.4  2e-09  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_5214  histone family protein nucleoid-structuring protein H-NS  38.78 
 
 
100 aa  62.8  2e-09  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.319749 
 
 
-
 
NC_010515  Bcenmc03_5060  histone family protein nucleoid-structuring protein H-NS  38.78 
 
 
100 aa  62.8  2e-09  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_3154  histone-like nucleoid-structuring protein H-NS  38.78 
 
 
100 aa  62.8  2e-09  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6934  histone family protein nucleoid-structuring protein H-NS  38.39 
 
 
96 aa  61.6  3e-09  Burkholderia phytofirmans PsJN  Bacteria  normal  0.909068  normal 
 
 
-
 
NC_010679  Bphyt_7403  histone family protein nucleoid-structuring protein H-NS  38.95 
 
 
96 aa  62  3e-09  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B2975  putative H-NS-like transcription regulator  38.6 
 
 
96 aa  61.6  3e-09  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_1598  nucleoid protein H-NS  39.8 
 
 
117 aa  61.6  4e-09  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_0175  histone family protein nucleoid-structuring protein H-NS  40 
 
 
98 aa  61.2  5e-09  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_0162  histone family protein nucleoid-structuring protein H-NS  40 
 
 
98 aa  61.2  5e-09  Burkholderia ambifaria AMMD  Bacteria  normal  0.121985  n/a   
 
 
-
 
NC_008760  Pnap_4730  histone family protein nucleoid-structuring protein H-NS  38.18 
 
 
121 aa  61.2  5e-09  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.167387  normal 
 
 
-
 
NC_008391  Bamb_3595  histone family protein nucleoid-structuring protein H-NS  35.71 
 
 
95 aa  61.2  5e-09  Burkholderia ambifaria AMMD  Bacteria  normal  0.137974  normal 
 
 
-
 
NC_010557  BamMC406_6084  histone family protein nucleoid-structuring protein H-NS  41.28 
 
 
99 aa  61.2  5e-09  Burkholderia ambifaria MC40-6  Bacteria  normal  0.78955  normal 
 
 
-
 
NC_010515  Bcenmc03_4633  histone family protein nucleoid-structuring protein H-NS  34.82 
 
 
101 aa  60.8  6e-09  Burkholderia cenocepacia MC0-3  Bacteria  unclonable  2.92632e-13  decreased coverage  2.43295e-05 
 
 
-
 
NC_010512  Bcenmc03_6525  histone family protein nucleoid-structuring protein H-NS  39.62 
 
 
99 aa  60.5  7e-09  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.381726 
 
 
-
 
NC_008544  Bcen2424_6035  histone family protein nucleoid-structuring protein H-NS  39.62 
 
 
99 aa  60.5  7e-09  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.401704 
 
 
-
 
NC_007509  Bcep18194_C7449  histone-like nucleoid-structuring protein H-NS  38.68 
 
 
99 aa  60.5  7e-09  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_4070  histone family protein nucleoid-structuring protein H-NS  35.71 
 
 
95 aa  60.5  7e-09  Burkholderia ambifaria MC40-6  Bacteria  decreased coverage  0.000676326  normal 
 
 
-
 
NC_008062  Bcen_5671  histone-like nucleoid-structuring protein H-NS  39.62 
 
 
99 aa  60.5  7e-09  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc0867  putative HNS-like transcription regulator protein  36.54 
 
 
96 aa  60.5  8e-09  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.139885 
 
 
-
 
NC_010002  Daci_1710  histone family protein nucleoid-structuring protein H-NS  37.08 
 
 
93 aa  60.5  9e-09  Delftia acidovorans SPH-1  Bacteria  normal  0.443687  normal  0.618525 
 
 
-
 
NC_010508  Bcenmc03_0231  histone family protein nucleoid-structuring protein H-NS  40 
 
 
98 aa  59.7  1e-08  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_3707  histone family protein nucleoid-structuring protein H-NS  43.81 
 
 
217 aa  59.7  1e-08  Burkholderia phytofirmans PsJN  Bacteria  normal  0.258134  hitchhiker  0.00183478 
 
 
-
 
NC_008542  Bcen2424_0249  histone family protein nucleoid-structuring protein H-NS  40 
 
 
98 aa  59.7  1e-08  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_008392  Bamb_6382  histone family protein nucleoid-structuring protein H-NS  40.37 
 
 
99 aa  60.1  1e-08  Burkholderia ambifaria AMMD  Bacteria  normal  0.193522  normal  0.0275568 
 
 
-
 
NC_007510  Bcep18194_A3351  histone-like nucleoid-structuring protein H-NS  41.05 
 
 
98 aa  59.7  1e-08  Burkholderia sp. 383  Bacteria  normal  normal  0.383074 
 
 
-
 
NC_008060  Bcen_2858  histone-like nucleoid-structuring protein H-NS  40 
 
 
98 aa  59.7  1e-08  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.259744  n/a   
 
 
-
 
NC_007948  Bpro_3984  histone-like nucleoid-structuring protein H-NS  39.09 
 
 
117 aa  59.3  2e-08  Polaromonas sp. JS666  Bacteria  normal  0.49889  normal  0.888803 
 
 
-
 
NC_007650  BTH_II1558  H-NS histone family protein  36.73 
 
 
131 aa  59.3  2e-08  Burkholderia thailandensis E264  Bacteria  normal  0.752713  n/a   
 
 
-
 
NC_007908  Rfer_3525  histone-like nucleoid-structuring protein H-NS  35.34 
 
 
123 aa  58.9  2e-08  Rhodoferax ferrireducens T118  Bacteria  normal  0.698098  n/a   
 
 
-
 
NC_010002  Daci_4071  histone family protein nucleoid-structuring protein H-NS  37.08 
 
 
95 aa  58.2  4e-08  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.0737815 
 
 
-
 
NC_007511  Bcep18194_B1833  histone-like nucleoid-structuring protein H-NS  35.29 
 
 
96 aa  58.2  4e-08  Burkholderia sp. 383  Bacteria  normal  0.648369  normal  0.932582 
 
 
-
 
NC_008835  BMA10229_2075  DNA-binding protein BprA  33.93 
 
 
100 aa  57.4  6e-08  Burkholderia mallei NCTC 10229  Bacteria  normal  0.0585602  n/a   
 
 
-
 
NC_010625  Bphy_6772  histone family protein nucleoid-structuring protein H-NS  38.71 
 
 
254 aa  57.4  6e-08  Burkholderia phymatum STM815  Bacteria  decreased coverage  1.11168e-07  normal  0.0541472 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>