More than 300 homologs were found in PanDaTox collection
for query gene Gobs_3933 on replicon NC_013757
Organism: Geodermatophilus obscurus DSM 43160



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013757  Gobs_3933  binding-protein-dependent transport systems inner membrane component  100 
 
 
320 aa  633  1e-180  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.292649  n/a   
 
 
-
 
NC_009664  Krad_1114  binding-protein-dependent transport systems inner membrane component  71.14 
 
 
319 aa  421  1e-117  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.32149  normal  0.356013 
 
 
-
 
NC_012669  Bcav_1096  binding-protein-dependent transport systems inner membrane component  68.04 
 
 
315 aa  402  1e-111  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.175054  normal 
 
 
-
 
NC_014151  Cfla_0961  binding-protein-dependent transport systems inner membrane component  69.21 
 
 
320 aa  386  1e-106  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.158412  hitchhiker  0.000108715 
 
 
-
 
NC_012803  Mlut_04590  permease component of ABC-type sugar transporter  62.42 
 
 
323 aa  376  1e-103  Micrococcus luteus NCTC 2665  Bacteria  normal  0.359187  n/a   
 
 
-
 
NC_008726  Mvan_2543  binding-protein-dependent transport systems inner membrane component  60.19 
 
 
310 aa  365  1e-100  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.944367  normal 
 
 
-
 
NC_009338  Mflv_3852  binding-protein-dependent transport systems inner membrane component  60.51 
 
 
310 aa  367  1e-100  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0634568 
 
 
-
 
NC_013169  Ksed_20480  carbohydrate ABC transporter membrane protein  57.51 
 
 
318 aa  362  4e-99  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.0521728  normal  0.389193 
 
 
-
 
NC_007484  Noc_0281  ABC transporter, inner membrane subunit  55.7 
 
 
292 aa  298  6e-80  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_4645  binding-protein-dependent transport systems inner membrane component  48.47 
 
 
299 aa  263  3e-69  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  hitchhiker  0.00190071 
 
 
-
 
NC_009921  Franean1_4616  binding-protein-dependent transport systems inner membrane component  49.68 
 
 
331 aa  258  1e-67  Frankia sp. EAN1pec  Bacteria  normal  0.338244  normal 
 
 
-
 
NC_013159  Svir_06500  carbohydrate ABC transporter membrane protein  46.86 
 
 
321 aa  253  2.0000000000000002e-66  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_1200  binding-protein-dependent transport systems inner membrane component  47.19 
 
 
310 aa  253  3e-66  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_3982  binding-protein-dependent transport systems inner membrane component  50 
 
 
308 aa  250  2e-65  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4056  binding-protein-dependent transport systems inner membrane component  50 
 
 
308 aa  250  2e-65  Mycobacterium sp. KMS  Bacteria  normal  0.853442  normal  0.685254 
 
 
-
 
NC_009077  Mjls_3996  binding-protein-dependent transport systems inner membrane component  50 
 
 
308 aa  250  3e-65  Mycobacterium sp. JLS  Bacteria  normal  0.172958  normal  0.378531 
 
 
-
 
NC_013441  Gbro_1867  binding-protein-dependent transport systems inner membrane component  46.96 
 
 
388 aa  249  6e-65  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_11261  sugar-transport integral membrane protein ABC transporter sugA  48.94 
 
 
307 aa  238  6.999999999999999e-62  Mycobacterium tuberculosis F11  Bacteria  normal  hitchhiker  0.00812399 
 
 
-
 
NC_013093  Amir_0808  binding-protein-dependent transport systems inner membrane component  45.6 
 
 
318 aa  237  2e-61  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_1042  binding-protein-dependent transport systems inner membrane component  46.71 
 
 
292 aa  223  4.9999999999999996e-57  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0233696  normal  0.724909 
 
 
-
 
NC_008541  Arth_3686  binding-protein-dependent transport systems inner membrane component  40.69 
 
 
310 aa  219  3.9999999999999997e-56  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2958  binding-protein-dependent transport systems inner membrane component  44.67 
 
 
435 aa  208  8e-53  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010320  Teth514_0396  binding-protein-dependent transport systems inner membrane component  41.44 
 
 
307 aa  207  2e-52  Thermoanaerobacter sp. X514  Bacteria  normal  0.701562  n/a   
 
 
-
 
NC_012034  Athe_2309  binding-protein-dependent transport systems inner membrane component  43.2 
 
 
427 aa  197  2.0000000000000003e-49  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.00000129291  n/a   
 
 
-
 
NC_009832  Spro_2525  binding-protein-dependent transport systems inner membrane component  36.92 
 
 
330 aa  192  6e-48  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009718  Fnod_0449  binding-protein-dependent transport systems inner membrane component  35.17 
 
 
295 aa  187  2e-46  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  0.982578  n/a   
 
 
-
 
NC_014210  Ndas_3354  binding-protein-dependent transport systems inner membrane component  36.75 
 
 
299 aa  187  3e-46  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009616  Tmel_1819  binding-protein-dependent transport systems inner membrane component  34.75 
 
 
293 aa  182  5.0000000000000004e-45  Thermosipho melanesiensis BI429  Bacteria  normal  0.215175  n/a   
 
 
-
 
NC_008687  Pden_4441  binding-protein-dependent transport systems inner membrane component  35.71 
 
 
320 aa  181  1e-44  Paracoccus denitrificans PD1222  Bacteria  normal  0.0272526  normal 
 
 
-
 
NC_009620  Smed_3811  binding-protein-dependent transport systems inner membrane component  34.38 
 
 
328 aa  177  2e-43  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0398  binding-protein-dependent transport systems inner membrane component  32.14 
 
 
312 aa  176  3e-43  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009486  Tpet_0955  binding-protein-dependent transport systems inner membrane component  35.15 
 
 
293 aa  177  3e-43  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0971  binding-protein-dependent transport systems inner membrane component  35.15 
 
 
293 aa  177  3e-43  Thermotoga sp. RQ2  Bacteria  normal  0.0994152  n/a   
 
 
-
 
NC_008148  Rxyl_1990  binding-protein-dependent transport systems inner membrane component  36.16 
 
 
306 aa  175  7e-43  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.306567  n/a   
 
 
-
 
NC_013205  Aaci_2236  binding-protein-dependent transport systems inner membrane component  34.84 
 
 
315 aa  174  1.9999999999999998e-42  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_0624  binding-protein-dependent transport systems inner membrane component  38.07 
 
 
345 aa  173  3.9999999999999995e-42  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.65014 
 
 
-
 
NC_009654  Mmwyl1_0024  binding-protein-dependent transport systems inner membrane component  33.55 
 
 
320 aa  173  3.9999999999999995e-42  Marinomonas sp. MWYL1  Bacteria  normal  0.227719  normal  0.433481 
 
 
-
 
NC_009668  Oant_2941  binding-protein-dependent transport systems inner membrane component  33.86 
 
 
320 aa  172  5e-42  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.974377  n/a   
 
 
-
 
NC_013440  Hoch_3145  binding-protein-dependent transport systems inner membrane component  35.96 
 
 
303 aa  173  5e-42  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.236219 
 
 
-
 
NC_010003  Pmob_0028  binding-protein-dependent transport systems inner membrane component  34.29 
 
 
300 aa  171  2e-41  Petrotoga mobilis SJ95  Bacteria  unclonable  0.0000000378352  n/a   
 
 
-
 
NC_007963  Csal_0259  binding-protein-dependent transport systems inner membrane component  33.87 
 
 
324 aa  171  2e-41  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_5492  binding-protein-dependent transport systems inner membrane component  34.17 
 
 
328 aa  170  2e-41  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.511246  normal  0.17987 
 
 
-
 
NC_011729  PCC7424_1896  binding-protein-dependent transport systems inner membrane component  35.74 
 
 
296 aa  170  3e-41  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  1.0543799999999999e-20 
 
 
-
 
NC_011899  Hore_19880  binding-protein-dependent transport systems inner membrane component  32.9 
 
 
323 aa  169  6e-41  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0305  sugar ABC transporter, permease protein  34.07 
 
 
325 aa  169  8e-41  Brucella suis 1330  Bacteria  normal  0.0474821  n/a   
 
 
-
 
NC_009504  BOV_A0280  sugar ABC transporter, permease protein  34.07 
 
 
325 aa  168  1e-40  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_2623  binding-protein-dependent transport systems inner membrane component  31.39 
 
 
330 aa  165  8e-40  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0584633  normal 
 
 
-
 
NC_008025  Dgeo_0590  binding-protein-dependent transport systems inner membrane component  35.84 
 
 
315 aa  163  3e-39  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.273483  normal 
 
 
-
 
NC_013530  Xcel_2796  binding-protein-dependent transport systems inner membrane component  38.51 
 
 
355 aa  164  3e-39  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_1016  binding-protein-dependent transport systems inner membrane component  38.58 
 
 
301 aa  163  4.0000000000000004e-39  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_0949  permease protein of sugar ABC transporter  34.04 
 
 
292 aa  157  2e-37  Synechococcus elongatus PCC 7942  Bacteria  normal  0.688345  normal 
 
 
-
 
NC_009664  Krad_4016  binding-protein-dependent transport systems inner membrane component  35.31 
 
 
338 aa  157  2e-37  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0789775 
 
 
-
 
NC_007005  Psyr_0761  binding-protein dependent transport system inner membrane protein  35.99 
 
 
320 aa  156  5.0000000000000005e-37  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0629996  normal  0.824676 
 
 
-
 
NC_009832  Spro_2296  binding-protein-dependent transport systems inner membrane component  35.31 
 
 
304 aa  156  6e-37  Serratia proteamaculans 568  Bacteria  normal  0.44429  normal 
 
 
-
 
NC_008699  Noca_0870  binding-protein-dependent transport systems inner membrane component  31.32 
 
 
309 aa  154  2e-36  Nocardioides sp. JS614  Bacteria  normal  0.800905  n/a   
 
 
-
 
NC_008541  Arth_0414  binding-protein-dependent transport systems inner membrane component  39.22 
 
 
345 aa  152  5e-36  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0306  binding-protein-dependent transport systems inner membrane component  33.86 
 
 
294 aa  150  2e-35  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_1752  binding-protein-dependent transport systems inner membrane component  30.37 
 
 
314 aa  150  3e-35  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000089983 
 
 
-
 
NC_009620  Smed_4397  binding-protein-dependent transport systems inner membrane component  34.98 
 
 
297 aa  150  4e-35  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.439093 
 
 
-
 
NC_009675  Anae109_1696  binding-protein-dependent transport systems inner membrane component  35.74 
 
 
291 aa  149  9e-35  Anaeromyxobacter sp. Fw109-5  Bacteria  hitchhiker  0.00180742  normal 
 
 
-
 
NC_009486  Tpet_0645  binding-protein-dependent transport systems inner membrane component  33.65 
 
 
309 aa  147  3e-34  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000282921  n/a   
 
 
-
 
NC_010003  Pmob_0073  binding-protein-dependent transport systems inner membrane component  30.28 
 
 
294 aa  146  5e-34  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_3328  binding-protein-dependent transport systems inner membrane component  31.48 
 
 
304 aa  145  8.000000000000001e-34  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_004578  PSPTO_0888  sugar ABC transporter, permease protein  35.99 
 
 
320 aa  144  2e-33  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.392731  n/a   
 
 
-
 
NC_008146  Mmcs_2419  binding-protein-dependent transport systems inner membrane component  35.66 
 
 
286 aa  144  2e-33  Mycobacterium sp. MCS  Bacteria  normal  0.235933  n/a   
 
 
-
 
NC_008705  Mkms_2464  binding-protein-dependent transport systems inner membrane component  35.66 
 
 
286 aa  144  2e-33  Mycobacterium sp. KMS  Bacteria  normal  0.80505  normal 
 
 
-
 
NC_009077  Mjls_2458  binding-protein-dependent transport systems inner membrane component  35.66 
 
 
286 aa  144  2e-33  Mycobacterium sp. JLS  Bacteria  normal  0.524108  normal 
 
 
-
 
NC_009636  Smed_2455  binding-protein-dependent transport systems inner membrane component  30.32 
 
 
313 aa  144  2e-33  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013124  Afer_1330  binding-protein-dependent transport systems inner membrane component  35 
 
 
316 aa  144  2e-33  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_2458  binding-protein-dependent transport systems inner membrane component  36.94 
 
 
299 aa  143  3e-33  Meiothermus ruber DSM 1279  Bacteria  normal  0.610005  normal  0.71076 
 
 
-
 
NC_013739  Cwoe_3982  binding-protein-dependent transport systems inner membrane component  32.06 
 
 
316 aa  144  3e-33  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_0548  ABC-type sugar / sn-glycerol-3-phosphate transport system permease protein ugpA  31.84 
 
 
288 aa  141  9.999999999999999e-33  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_010483  TRQ2_0670  binding-protein-dependent transport systems inner membrane component  34.06 
 
 
294 aa  142  9.999999999999999e-33  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_2171  carbohydrate ABC transporter permease  34.51 
 
 
280 aa  141  9.999999999999999e-33  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.0580768  n/a   
 
 
-
 
NC_010465  YPK_2279  binding-protein-dependent transport systems inner membrane component  34.52 
 
 
286 aa  140  1.9999999999999998e-32  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_013744  Htur_4398  binding-protein-dependent transport systems inner membrane component  30.14 
 
 
314 aa  141  1.9999999999999998e-32  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.0144983  n/a   
 
 
-
 
NC_007643  Rru_A1261  binding-protein dependent transport system inner membrane protein  32.97 
 
 
298 aa  140  3e-32  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.196832  n/a   
 
 
-
 
NC_010159  YpAngola_A2083  carbohydrate ABC transporter permease  34.52 
 
 
286 aa  139  3.9999999999999997e-32  Yersinia pestis Angola  Bacteria  normal  normal  0.0183943 
 
 
-
 
NC_012848  Rleg_5199  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
312 aa  139  7.999999999999999e-32  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0867066 
 
 
-
 
NC_009664  Krad_4401  binding-protein-dependent transport systems inner membrane component  34.16 
 
 
316 aa  139  8.999999999999999e-32  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1501  binding-protein-dependent transport systems inner membrane component  30.65 
 
 
304 aa  139  8.999999999999999e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.707606 
 
 
-
 
NC_012850  Rleg_2427  binding-protein-dependent transport systems inner membrane component  31.03 
 
 
322 aa  139  8.999999999999999e-32  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.535373  normal  0.626108 
 
 
-
 
NC_009664  Krad_2091  binding-protein-dependent transport systems inner membrane component  29.59 
 
 
292 aa  139  8.999999999999999e-32  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_1389  binding-protein-dependent transport systems inner membrane component  31.25 
 
 
300 aa  137  2e-31  Jannaschia sp. CCS1  Bacteria  normal  0.0114019  normal  0.0892858 
 
 
-
 
NC_007947  Mfla_2349  binding-protein-dependent transport systems inner membrane component  35.05 
 
 
307 aa  137  2e-31  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.552621 
 
 
-
 
NC_013946  Mrub_2089  binding-protein-dependent transport systems inner membrane component  36.77 
 
 
293 aa  137  2e-31  Meiothermus ruber DSM 1279  Bacteria  decreased coverage  0.000000240561  normal  0.90976 
 
 
-
 
NC_009338  Mflv_3776  binding-protein-dependent transport systems inner membrane component  32.35 
 
 
286 aa  137  3.0000000000000003e-31  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.771132  normal  0.363599 
 
 
-
 
NC_013093  Amir_1844  binding-protein-dependent transport systems inner membrane component  31.16 
 
 
291 aa  136  5e-31  Actinosynnema mirum DSM 43827  Bacteria  normal  0.476032  n/a   
 
 
-
 
NC_008686  Pden_1048  binding-protein-dependent transport systems inner membrane component  32.6 
 
 
308 aa  136  6.0000000000000005e-31  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6370  binding-protein-dependent transport systems inner membrane component  28.34 
 
 
318 aa  136  6.0000000000000005e-31  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1681  binding-protein-dependent transport systems inner membrane component  32.34 
 
 
316 aa  136  6.0000000000000005e-31  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.130846  normal 
 
 
-
 
NC_009636  Smed_0187  binding-protein-dependent transport systems inner membrane component  32.45 
 
 
307 aa  135  8e-31  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_7824  putative ABC transporter permease protein  30.96 
 
 
295 aa  135  9e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5469  binding-protein-dependent transport systems inner membrane component  32.62 
 
 
313 aa  135  9.999999999999999e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.394829 
 
 
-
 
NC_010320  Teth514_2196  binding-protein-dependent transport systems inner membrane component  29.75 
 
 
285 aa  135  9.999999999999999e-31  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.00879782  n/a   
 
 
-
 
NC_012850  Rleg_2284  binding-protein-dependent transport systems inner membrane component  30.07 
 
 
291 aa  134  1.9999999999999998e-30  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.257134 
 
 
-
 
NC_009667  Oant_0362  binding-protein-dependent transport systems inner membrane component  30.03 
 
 
312 aa  134  1.9999999999999998e-30  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.541424  n/a   
 
 
-
 
NC_010552  BamMC406_4681  binding-protein-dependent transport systems inner membrane component  33.94 
 
 
289 aa  132  5e-30  Burkholderia ambifaria MC40-6  Bacteria  normal  0.205446  normal 
 
 
-
 
NC_007494  RSP_3673  ABC sugar transporter, inner membrane subunit  30.65 
 
 
308 aa  132  6e-30  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.246744  n/a   
 
 
-
 
NC_008726  Mvan_2623  binding-protein-dependent transport systems inner membrane component  31.47 
 
 
287 aa  132  6e-30  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
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