More than 300 homologs were found in PanDaTox collection
for query gene Gmet_0355 on replicon NC_007517
Organism: Geobacter metallireducens GS-15



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007517  Gmet_0355  histone-like DNA-binding protein  100 
 
 
94 aa  177  4.999999999999999e-44  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00204011  normal  0.390975 
 
 
-
 
NC_002939  GSU3132  DNA-binding protein HU  98.94 
 
 
94 aa  175  2e-43  Geobacter sulfurreducens PCA  Bacteria  normal  0.246817  n/a   
 
 
-
 
NC_009483  Gura_4407  histone family protein DNA-binding protein  88.3 
 
 
94 aa  160  8.000000000000001e-39  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000192025  n/a   
 
 
-
 
NC_007517  Gmet_1608  histone-like DNA-binding protein  90.43 
 
 
96 aa  159  1e-38  Geobacter metallireducens GS-15  Bacteria  unclonable  5.49082e-20  normal 
 
 
-
 
NC_011146  Gbem_0188  histone family protein DNA-binding protein  85.11 
 
 
94 aa  157  6e-38  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0170  histone family protein DNA-binding protein  85.11 
 
 
94 aa  157  6e-38  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000201093 
 
 
-
 
NC_007484  Noc_1772  histone-like DNA-binding protein  66.29 
 
 
90 aa  123  1e-27  Nitrosococcus oceani ATCC 19707  Bacteria  decreased coverage  0.000757515  n/a   
 
 
-
 
NC_009832  Spro_1098  histone family protein DNA-binding protein  67.42 
 
 
101 aa  120  7e-27  Serratia proteamaculans 568  Bacteria  hitchhiker  0.00970005  hitchhiker  0.00000236625 
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  62.92 
 
 
90 aa  120  9e-27  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal 
 
 
-
 
NC_009092  Shew_2505  histone family protein DNA-binding protein  64.04 
 
 
90 aa  119  9.999999999999999e-27  Shewanella loihica PV-4  Bacteria  hitchhiker  0.0000000791734  normal  0.581146 
 
 
-
 
NC_008740  Maqu_1837  histone family protein DNA-binding protein  64.04 
 
 
90 aa  119  1.9999999999999998e-26  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.00431989  n/a   
 
 
-
 
NC_009831  Ssed_1544  histone family protein DNA-binding protein  62.92 
 
 
90 aa  118  1.9999999999999998e-26  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.000000007734  hitchhiker  0.000745392 
 
 
-
 
NC_008609  Ppro_1181  histone family protein DNA-binding protein  64.13 
 
 
92 aa  117  3.9999999999999996e-26  Pelobacter propionicus DSM 2379  Bacteria  normal  0.42545  n/a   
 
 
-
 
NC_008577  Shewana3_2658  histone family protein DNA-binding protein  61.8 
 
 
90 aa  117  3.9999999999999996e-26  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000180426  normal  0.730265 
 
 
-
 
CP001509  ECD_00392  HU, DNA-binding transcriptional regulator, beta subunit  64.04 
 
 
90 aa  117  4.9999999999999996e-26  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3169  histone family protein DNA-binding protein  64.04 
 
 
90 aa  117  4.9999999999999996e-26  Escherichia coli DH1  Bacteria  hitchhiker  0.000005828  n/a   
 
 
-
 
NC_002977  MCA0532  DNA-binding protein HU-beta  66.29 
 
 
90 aa  117  4.9999999999999996e-26  Methylococcus capsulatus str. Bath  Bacteria  decreased coverage  0.00043104  n/a   
 
 
-
 
NC_009801  EcE24377A_0476  transcriptional regulator HU subunit beta  64.04 
 
 
90 aa  117  4.9999999999999996e-26  Escherichia coli E24377A  Bacteria  hitchhiker  0.000220916  n/a   
 
 
-
 
NC_011353  ECH74115_0526  transcriptional regulator HU subunit beta  64.04 
 
 
90 aa  117  4.9999999999999996e-26  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.00026983  normal  0.698185 
 
 
-
 
NC_004347  SO_1797  HU family DNA-binding protein  61.8 
 
 
90 aa  117  4.9999999999999996e-26  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011663  Sbal223_2747  histone family protein DNA-binding protein  61.8 
 
 
90 aa  117  4.9999999999999996e-26  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000000276504  normal  0.581764 
 
 
-
 
NC_010468  EcolC_3192  transcriptional regulator HU subunit beta  64.04 
 
 
90 aa  117  4.9999999999999996e-26  Escherichia coli ATCC 8739  Bacteria  normal  0.0216859  hitchhiker  0.00242013 
 
 
-
 
NC_010658  SbBS512_E0363  transcriptional regulator HU subunit beta  64.04 
 
 
90 aa  117  4.9999999999999996e-26  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.00017145  n/a   
 
 
-
 
NC_009800  EcHS_A0517  transcriptional regulator HU subunit beta  64.04 
 
 
90 aa  117  4.9999999999999996e-26  Escherichia coli HS  Bacteria  hitchhiker  0.0000000000441181  n/a   
 
 
-
 
NC_009997  Sbal195_1630  histone family protein DNA-binding protein  61.8 
 
 
90 aa  117  4.9999999999999996e-26  Shewanella baltica OS195  Bacteria  unclonable  0.0000000159632  normal 
 
 
-
 
NC_009438  Sputcn32_1493  histone family protein DNA-binding protein  61.8 
 
 
90 aa  117  4.9999999999999996e-26  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000000388309  n/a   
 
 
-
 
NC_012892  B21_00396  hypothetical protein  64.04 
 
 
90 aa  117  4.9999999999999996e-26  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_2492  histone family protein DNA-binding protein  61.8 
 
 
90 aa  117  4.9999999999999996e-26  Shewanella sp. MR-4  Bacteria  unclonable  0.000000000348442  normal  0.0842071 
 
 
-
 
NC_008322  Shewmr7_2560  histone family protein DNA-binding protein  61.8 
 
 
90 aa  117  4.9999999999999996e-26  Shewanella sp. MR-7  Bacteria  unclonable  0.000000135506  normal  0.0536414 
 
 
-
 
NC_010498  EcSMS35_0483  transcriptional regulator HU subunit beta  64.04 
 
 
90 aa  117  4.9999999999999996e-26  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.000219434  normal 
 
 
-
 
NC_009052  Sbal_1607  histone family protein DNA-binding protein  61.8 
 
 
90 aa  117  4.9999999999999996e-26  Shewanella baltica OS155  Bacteria  hitchhiker  0.0000000022491  n/a   
 
 
-
 
NC_009665  Shew185_1596  histone family protein DNA-binding protein  61.8 
 
 
90 aa  117  4.9999999999999996e-26  Shewanella baltica OS185  Bacteria  unclonable  0.00000000000169185  n/a   
 
 
-
 
NC_003909  BCE_1637  DNA-binding protein HU  62.92 
 
 
90 aa  116  9.999999999999999e-26  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.00420342  n/a   
 
 
-
 
NC_005945  BAS1420  DNA-binding protein HU  62.92 
 
 
90 aa  116  9.999999999999999e-26  Bacillus anthracis str. Sterne  Bacteria  normal  0.190218  n/a   
 
 
-
 
NC_005957  BT9727_1392  DNA-binding protein HU  62.92 
 
 
90 aa  116  9.999999999999999e-26  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.011833  n/a   
 
 
-
 
NC_006274  BCZK1392  DNA-binding protein HU  62.92 
 
 
90 aa  116  9.999999999999999e-26  Bacillus cereus E33L  Bacteria  decreased coverage  0.00000512711  n/a   
 
 
-
 
NC_011725  BCB4264_A1566  DNA-binding protein HU  62.92 
 
 
90 aa  116  9.999999999999999e-26  Bacillus cereus B4264  Bacteria  normal  0.236067  n/a   
 
 
-
 
NC_011772  BCG9842_B3779  DNA-binding protein HU  62.92 
 
 
90 aa  116  9.999999999999999e-26  Bacillus cereus G9842  Bacteria  decreased coverage  0.000354145  normal  0.961445 
 
 
-
 
NC_010184  BcerKBAB4_1434  histone family protein DNA-binding protein  62.92 
 
 
90 aa  116  9.999999999999999e-26  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.087278  n/a   
 
 
-
 
NC_007530  GBAA_1531  DNA-binding protein HU  62.92 
 
 
90 aa  116  9.999999999999999e-26  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.259543  n/a   
 
 
-
 
NC_011658  BCAH187_A1673  DNA-binding protein HU  62.92 
 
 
90 aa  116  9.999999999999999e-26  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000325838  n/a   
 
 
-
 
NC_007912  Sde_1611  nucleoid protein HU beta subunit  62.92 
 
 
90 aa  116  9.999999999999999e-26  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.000132089  normal 
 
 
-
 
NC_009674  Bcer98_1233  histone family protein DNA-binding protein  62.92 
 
 
90 aa  116  9.999999999999999e-26  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.0133564  n/a   
 
 
-
 
NC_010814  Glov_1926  histone family protein DNA-binding protein  64.13 
 
 
92 aa  115  9.999999999999999e-26  Geobacter lovleyi SZ  Bacteria  unclonable  0.0000000201993  n/a   
 
 
-
 
NC_009901  Spea_2678  histone family protein DNA-binding protein  61.8 
 
 
90 aa  115  9.999999999999999e-26  Shewanella pealeana ATCC 700345  Bacteria  unclonable  0.0000000000589622  n/a   
 
 
-
 
NC_013411  GYMC61_0465  histone family protein DNA-binding protein  61.8 
 
 
90 aa  116  9.999999999999999e-26  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011773  BCAH820_1604  DNA-binding protein HU  62.92 
 
 
90 aa  116  9.999999999999999e-26  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000159132 
 
 
-
 
NC_008345  Sfri_2593  histone family protein DNA-binding protein  61.8 
 
 
91 aa  116  9.999999999999999e-26  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.0000000173721  n/a   
 
 
-
 
NC_011205  SeD_A0493  transcriptional regulator HU subunit beta  62.92 
 
 
90 aa  115  1.9999999999999998e-25  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.107938  normal 
 
 
-
 
NC_009656  PSPA7_3493  DNA-binding protein HU  66.29 
 
 
90 aa  115  1.9999999999999998e-25  Pseudomonas aeruginosa PA7  Bacteria  normal  0.175993  n/a   
 
 
-
 
NC_011149  SeAg_B0491  transcriptional regulator HU subunit beta  62.92 
 
 
90 aa  115  1.9999999999999998e-25  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0126716  n/a   
 
 
-
 
NC_009654  Mmwyl1_1726  histone family protein DNA-binding protein  64.04 
 
 
90 aa  115  1.9999999999999998e-25  Marinomonas sp. MWYL1  Bacteria  unclonable  0.00000000326644  hitchhiker  0.00672024 
 
 
-
 
NC_011083  SeHA_C0554  transcriptional regulator HU subunit beta  62.92 
 
 
90 aa  115  1.9999999999999998e-25  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  hitchhiker  0.00736621  normal 
 
 
-
 
NC_011094  SeSA_A0510  transcriptional regulator HU subunit beta  62.92 
 
 
90 aa  115  1.9999999999999998e-25  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0507646  normal 
 
 
-
 
NC_007954  Sden_0658  histone-like DNA-binding protein  60.67 
 
 
90 aa  115  1.9999999999999998e-25  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_2492  histone-like DNA-binding protein  60.67 
 
 
90 aa  115  1.9999999999999998e-25  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00401844  n/a   
 
 
-
 
NC_011080  SNSL254_A0500  transcriptional regulator HU subunit beta  62.92 
 
 
90 aa  115  1.9999999999999998e-25  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.332585  normal  0.0268714 
 
 
-
 
NC_010506  Swoo_3110  histone family protein DNA-binding protein  61.8 
 
 
90 aa  115  1.9999999999999998e-25  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000105676  hitchhiker  0.00000299463 
 
 
-
 
NC_008463  PA14_41210  DNA-binding protein HU  66.29 
 
 
90 aa  115  1.9999999999999998e-25  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0758892  normal  0.416187 
 
 
-
 
NC_012793  GWCH70_2154  histone family protein DNA-binding protein  60.67 
 
 
90 aa  114  3.9999999999999997e-25  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000000552537  n/a   
 
 
-
 
NC_007951  Bxe_A2292  nucleoid protein Hbs  65.17 
 
 
90 aa  114  3.9999999999999997e-25  Burkholderia xenovorans LB400  Bacteria  normal  0.337722  normal  0.315371 
 
 
-
 
NC_010681  Bphyt_1909  histone family protein DNA-binding protein  66.29 
 
 
90 aa  114  3.9999999999999997e-25  Burkholderia phytofirmans PsJN  Bacteria  normal  0.715849  normal 
 
 
-
 
NC_010622  Bphy_1014  histone family protein DNA-binding protein  65.17 
 
 
90 aa  114  3.9999999999999997e-25  Burkholderia phymatum STM815  Bacteria  normal  0.385833  normal 
 
 
-
 
NC_010159  YpAngola_A3051  transcriptional regulator HU subunit beta  61.8 
 
 
90 aa  114  5e-25  Yersinia pestis Angola  Bacteria  hitchhiker  0.00488463  normal 
 
 
-
 
NC_010465  YPK_3231  transcriptional regulator HU subunit beta  61.8 
 
 
90 aa  114  5e-25  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_3089  transcriptional regulator HU subunit beta  61.8 
 
 
90 aa  114  5e-25  Yersinia pseudotuberculosis IP 31758  Bacteria  unclonable  1.42002e-19  n/a   
 
 
-
 
NC_007404  Tbd_1674  histone-like DNA-binding protein  66.29 
 
 
90 aa  114  5e-25  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.171237 
 
 
-
 
NC_007947  Mfla_0016  nucleoid protein HU beta subunit  65.17 
 
 
90 aa  114  5e-25  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_2043  histone-like DNA-binding protein  61.8 
 
 
90 aa  114  5e-25  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_3532  histone family protein DNA-binding protein  60.67 
 
 
90 aa  114  5e-25  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_0907  transcriptional regulator HU subunit beta  62.92 
 
 
90 aa  114  5e-25  Enterobacter sp. 638  Bacteria  normal  0.0908162  normal 
 
 
-
 
NC_009439  Pmen_2053  nucleoid protein HU beta subunit  65.17 
 
 
90 aa  113  6.9999999999999995e-25  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.000457213  normal  0.0670315 
 
 
-
 
NC_008528  OEOE_1010  nucleoid protein Hbs  64.77 
 
 
91 aa  112  1.0000000000000001e-24  Oenococcus oeni PSU-1  Bacteria  normal  0.301873  n/a   
 
 
-
 
NC_008531  LEUM_1290  nucleoid protein Hbs  63.64 
 
 
91 aa  113  1.0000000000000001e-24  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  hitchhiker  0.00000854913  n/a   
 
 
-
 
NC_002947  PP_2303  histone family protein DNA-binding protein  64.04 
 
 
90 aa  112  2.0000000000000002e-24  Pseudomonas putida KT2440  Bacteria  normal  0.0561689  hitchhiker  0.000233767 
 
 
-
 
NC_004347  SO_0548  HU family DNA-binding protein  56.18 
 
 
90 aa  112  2.0000000000000002e-24  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010322  PputGB1_1905  histone family protein DNA-binding protein  64.04 
 
 
90 aa  112  2.0000000000000002e-24  Pseudomonas putida GB-1  Bacteria  normal  0.173408  hitchhiker  0.000216257 
 
 
-
 
NC_009512  Pput_3466  histone family protein DNA-binding protein  64.04 
 
 
90 aa  112  2.0000000000000002e-24  Pseudomonas putida F1  Bacteria  normal  0.360259  hitchhiker  0.000212777 
 
 
-
 
NC_012560  Avin_23600  histone-like DNA-binding protein  64.04 
 
 
90 aa  112  2.0000000000000002e-24  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3261  transcriptional regulator HU subunit beta  60.67 
 
 
90 aa  112  2.0000000000000002e-24  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1051  transcriptional regulator HU subunit beta  60.67 
 
 
90 aa  112  2.0000000000000002e-24  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.593082  n/a   
 
 
-
 
NC_008781  Pnap_1633  histone family protein DNA-binding protein  62.92 
 
 
90 aa  112  2.0000000000000002e-24  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0548  histone family protein DNA-binding protein  57.3 
 
 
90 aa  112  2.0000000000000002e-24  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_3158  histone-like DNA-binding protein  60.67 
 
 
90 aa  112  2.0000000000000002e-24  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_2873  transcriptional regulator HU subunit beta  61.8 
 
 
90 aa  112  2.0000000000000002e-24  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3065  transcriptional regulator HU subunit beta  60.67 
 
 
90 aa  111  3e-24  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_0600  histone family protein DNA-binding protein  60.67 
 
 
90 aa  111  3e-24  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0942  histone family protein DNA-binding protein  60.67 
 
 
90 aa  111  3e-24  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_4353  histone family protein DNA-binding protein  60.67 
 
 
90 aa  111  4.0000000000000004e-24  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_1227  HU family DNA-binding protein  59.55 
 
 
90 aa  111  4.0000000000000004e-24  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0000165625  normal 
 
 
-
 
NC_011146  Gbem_1275  histone family protein DNA-binding protein  58.43 
 
 
91 aa  111  4.0000000000000004e-24  Geobacter bemidjiensis Bem  Bacteria  decreased coverage  0.0000000292942  n/a   
 
 
-
 
NC_007948  Bpro_3065  nucleoid protein Hbs  62.92 
 
 
90 aa  111  4.0000000000000004e-24  Polaromonas sp. JS666  Bacteria  normal  0.135138  normal  0.394857 
 
 
-
 
NC_008577  Shewana3_0547  histone family protein DNA-binding protein  56.18 
 
 
90 aa  110  4.0000000000000004e-24  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_1789  histone family protein DNA-binding protein  60.67 
 
 
90 aa  110  5e-24  Variovorax paradoxus S110  Bacteria  normal  0.970942  n/a   
 
 
-
 
NC_008825  Mpe_A1956  nucleoid protein Hbs  61.8 
 
 
90 aa  110  5e-24  Methylibium petroleiphilum PM1  Bacteria  normal  0.582961  normal  0.45981 
 
 
-
 
NC_010717  PXO_02474  DNA-binding protein HU  62.92 
 
 
90 aa  110  5e-24  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3008  histone family protein DNA-binding protein  58.43 
 
 
91 aa  110  6e-24  Geobacter sp. M21  Bacteria  n/a    normal  0.341575 
 
 
-
 
NC_010577  XfasM23_0470  histone family protein DNA-binding protein  58.43 
 
 
94 aa  110  6e-24  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_1035  histone family protein DNA-binding protein  59.55 
 
 
90 aa  110  7.000000000000001e-24  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  decreased coverage  0.00000557803  hitchhiker  0.00000000462139 
 
 
-
 
NC_009901  Spea_3731  histone family protein DNA-binding protein  60.67 
 
 
90 aa  110  7.000000000000001e-24  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
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