More than 300 homologs were found in PanDaTox collection
for query gene Avi_5582 on replicon NC_011988
Organism: Agrobacterium vitis S4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011988  Avi_5582  ABC transporter membrane spanning protein (galacturonic acid)  100 
 
 
293 aa  586  1e-166  Agrobacterium vitis S4  Bacteria  normal  0.542291  n/a   
 
 
-
 
NC_012850  Rleg_4346  binding-protein-dependent transport systems inner membrane component  73.22 
 
 
292 aa  437  9.999999999999999e-123  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  hitchhiker  0.0000934569 
 
 
-
 
NC_011369  Rleg2_4017  binding-protein-dependent transport systems inner membrane component  72.54 
 
 
292 aa  436  1e-121  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.924355  normal 
 
 
-
 
NC_009636  Smed_3327  binding-protein-dependent transport systems inner membrane component  76.01 
 
 
295 aa  429  1e-119  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.925961 
 
 
-
 
NC_013172  Bfae_29710  carbohydrate ABC transporter membrane protein  58.62 
 
 
304 aa  324  1e-87  Brachybacterium faecium DSM 4810  Bacteria  normal  0.942295  n/a   
 
 
-
 
NC_014210  Ndas_2035  binding-protein-dependent transport systems inner membrane component  55.52 
 
 
291 aa  324  1e-87  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0974901  normal  0.381629 
 
 
-
 
NC_013521  Sked_05240  carbohydrate ABC transporter membrane protein  56.36 
 
 
312 aa  321  9.999999999999999e-87  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1532  binding-protein-dependent transport systems inner membrane component  57.52 
 
 
305 aa  316  3e-85  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.995394  normal  0.0303683 
 
 
-
 
NC_011886  Achl_0497  binding-protein-dependent transport systems inner membrane component  54.89 
 
 
306 aa  315  4e-85  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000825086 
 
 
-
 
NC_013530  Xcel_2536  binding-protein-dependent transport systems inner membrane component  55.93 
 
 
306 aa  312  2.9999999999999996e-84  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.250656  n/a   
 
 
-
 
NC_012669  Bcav_0791  binding-protein-dependent transport systems inner membrane component  58.65 
 
 
308 aa  313  2.9999999999999996e-84  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.013285 
 
 
-
 
NC_007333  Tfu_1703  putative transport system permease ABC transporter protein  52.4 
 
 
292 aa  310  2e-83  Thermobifida fusca YX  Bacteria  normal  0.757038  n/a   
 
 
-
 
NC_012669  Bcav_3554  binding-protein-dependent transport systems inner membrane component  54.89 
 
 
274 aa  306  2.0000000000000002e-82  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.330294  normal  0.257699 
 
 
-
 
NC_012669  Bcav_0802  binding-protein-dependent transport systems inner membrane component  52.94 
 
 
286 aa  301  8.000000000000001e-81  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.0123708 
 
 
-
 
NC_012669  Bcav_3897  binding-protein-dependent transport systems inner membrane component  56.13 
 
 
289 aa  300  3e-80  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.858464 
 
 
-
 
NC_012669  Bcav_0921  binding-protein-dependent transport systems inner membrane component  57.2 
 
 
284 aa  298  8e-80  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_0591  binding-protein-dependent transport systems inner membrane component  55.29 
 
 
300 aa  295  6e-79  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.303793  normal  0.0150565 
 
 
-
 
NC_013521  Sked_05440  carbohydrate ABC transporter membrane protein  48.79 
 
 
307 aa  289  4e-77  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.050978  normal 
 
 
-
 
NC_013530  Xcel_2649  binding-protein-dependent transport systems inner membrane component  51.13 
 
 
300 aa  288  5.0000000000000004e-77  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_2231  binding-protein-dependent transport systems inner membrane component  49.33 
 
 
297 aa  284  1.0000000000000001e-75  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.807172 
 
 
-
 
NC_008541  Arth_3327  binding-protein-dependent transport systems inner membrane component  52.96 
 
 
314 aa  282  5.000000000000001e-75  Arthrobacter sp. FB24  Bacteria  hitchhiker  0.00328886  n/a   
 
 
-
 
NC_011886  Achl_3129  binding-protein-dependent transport systems inner membrane component  52.96 
 
 
313 aa  281  7.000000000000001e-75  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.0180019 
 
 
-
 
NC_012034  Athe_2079  binding-protein-dependent transport systems inner membrane component  51.84 
 
 
280 aa  281  7.000000000000001e-75  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.697078  n/a   
 
 
-
 
NC_013530  Xcel_0899  binding-protein-dependent transport systems inner membrane component  49.15 
 
 
308 aa  276  2e-73  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.408611  n/a   
 
 
-
 
NC_008541  Arth_3322  binding-protein-dependent transport systems inner membrane component  48.81 
 
 
309 aa  268  5.9999999999999995e-71  Arthrobacter sp. FB24  Bacteria  normal  0.0903437  n/a   
 
 
-
 
NC_009664  Krad_2142  binding-protein-dependent transport systems inner membrane component  51.27 
 
 
293 aa  268  5.9999999999999995e-71  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_2458  binding-protein-dependent transport systems inner membrane component  48.69 
 
 
281 aa  265  5e-70  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.162326  n/a   
 
 
-
 
NC_014210  Ndas_0560  binding-protein-dependent transport systems inner membrane component  52.71 
 
 
292 aa  265  8.999999999999999e-70  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.843262 
 
 
-
 
NC_010001  Cphy_3400  binding-protein-dependent transport systems inner membrane component  45.88 
 
 
283 aa  258  9e-68  Clostridium phytofermentans ISDg  Bacteria  normal  0.372936  n/a   
 
 
-
 
NC_011886  Achl_3122  binding-protein-dependent transport systems inner membrane component  46.5 
 
 
305 aa  257  1e-67  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.290341 
 
 
-
 
NC_013517  Sterm_4048  binding-protein-dependent transport systems inner membrane component  42.09 
 
 
287 aa  257  1e-67  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_0972  binding-protein-dependent transport systems inner membrane component  49.63 
 
 
276 aa  252  4.0000000000000004e-66  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_0699  binding-protein-dependent transport systems inner membrane component  42.28 
 
 
301 aa  249  3e-65  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_0439  binding-protein-dependent transport systems inner membrane component  43.38 
 
 
279 aa  245  6.999999999999999e-64  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0806983  n/a   
 
 
-
 
NC_012034  Athe_2374  binding-protein-dependent transport systems inner membrane component  41.2 
 
 
285 aa  241  9e-63  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2216  binding-protein-dependent transport systems inner membrane component  47.74 
 
 
301 aa  233  3e-60  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0775  binding-protein-dependent transport systems inner membrane component  36.77 
 
 
303 aa  229  3e-59  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_2035  binding-protein-dependent transport systems inner membrane component  38.49 
 
 
300 aa  226  5.0000000000000005e-58  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_3290  binding-protein-dependent transport systems inner membrane component  35.62 
 
 
300 aa  225  8e-58  Enterobacter sp. 638  Bacteria  normal  normal  0.237365 
 
 
-
 
NC_013525  Tter_0124  binding-protein-dependent transport systems inner membrane component  42.5 
 
 
277 aa  225  8e-58  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009708  YpsIP31758_1690  oligogalacturonide ABC tansporter, permease protein  37.83 
 
 
306 aa  224  1e-57  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.064753  n/a   
 
 
-
 
NC_010159  YpAngola_A2646  oligogalacturonide ABC tansporter, permease  37.83 
 
 
306 aa  224  1e-57  Yersinia pestis Angola  Bacteria  normal  0.559892  normal  0.131938 
 
 
-
 
NC_010465  YPK_1800  binding-protein-dependent transport systems inner membrane component  37.83 
 
 
306 aa  224  1e-57  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.429267  n/a   
 
 
-
 
NC_012912  Dd1591_1968  binding-protein-dependent transport systems inner membrane component  37.76 
 
 
300 aa  224  2e-57  Dickeya zeae Ech1591  Bacteria  normal  0.634652  n/a   
 
 
-
 
NC_009523  RoseRS_1358  binding-protein-dependent transport systems inner membrane component  44.49 
 
 
291 aa  221  9.999999999999999e-57  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_1750  binding-protein-dependent transport systems inner membrane component  46.89 
 
 
381 aa  218  7.999999999999999e-56  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_0621  binding-protein-dependent transport systems inner membrane component  37.69 
 
 
289 aa  218  7.999999999999999e-56  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00195134  n/a   
 
 
-
 
NC_009767  Rcas_3565  binding-protein-dependent transport systems inner membrane component  44.11 
 
 
291 aa  217  2e-55  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.276199 
 
 
-
 
NC_009523  RoseRS_2820  binding-protein-dependent transport systems inner membrane component  40.91 
 
 
299 aa  216  4e-55  Roseiflexus sp. RS-1  Bacteria  hitchhiker  0.0050805  normal 
 
 
-
 
NC_009767  Rcas_2544  binding-protein-dependent transport systems inner membrane component  40.14 
 
 
299 aa  216  4e-55  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.238071  normal  0.0688071 
 
 
-
 
NC_013526  Tter_2135  binding-protein-dependent transport systems inner membrane component  40.94 
 
 
296 aa  214  1.9999999999999998e-54  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3791  binding-protein-dependent transport systems inner membrane component  38.93 
 
 
300 aa  213  1.9999999999999998e-54  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.17142  normal 
 
 
-
 
NC_012917  PC1_1906  binding-protein-dependent transport systems inner membrane component  36.15 
 
 
301 aa  213  2.9999999999999995e-54  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.207694  n/a   
 
 
-
 
NC_013526  Tter_2512  binding-protein-dependent transport systems inner membrane component  41.43 
 
 
292 aa  213  2.9999999999999995e-54  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.660216  n/a   
 
 
-
 
NC_013526  Tter_2040  binding-protein-dependent transport systems inner membrane component  42.8 
 
 
305 aa  212  7e-54  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00998336  n/a   
 
 
-
 
NC_012669  Bcav_1470  binding-protein-dependent transport systems inner membrane component  41.25 
 
 
305 aa  211  9e-54  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_2199  binding-protein-dependent transport systems inner membrane component  35.81 
 
 
301 aa  211  1e-53  Pectobacterium wasabiae WPP163  Bacteria  normal  0.662638  n/a   
 
 
-
 
NC_009523  RoseRS_3620  binding-protein-dependent transport systems inner membrane component  39.29 
 
 
302 aa  211  1e-53  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_0515  binding-protein-dependent transport systems inner membrane component  40.71 
 
 
302 aa  207  1e-52  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0264  binding-protein-dependent transport systems inner membrane component  39.77 
 
 
307 aa  207  2e-52  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010320  Teth514_1101  binding-protein-dependent transport systems inner membrane component  39.93 
 
 
280 aa  206  3e-52  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2522  binding-protein-dependent transport systems inner membrane component  43.12 
 
 
297 aa  206  5e-52  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.00000000227991  n/a   
 
 
-
 
NC_013526  Tter_2317  binding-protein-dependent transport systems inner membrane component  39.93 
 
 
299 aa  205  7e-52  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009939  Dgeo_2917  ABC-type sugar transport system, permease component  42.81 
 
 
273 aa  203  3e-51  Deinococcus geothermalis DSM 11300  Bacteria  n/a    n/a   
 
 
-
 
NC_009616  Tmel_1014  binding-protein-dependent transport systems inner membrane component  38.46 
 
 
273 aa  201  1.9999999999999998e-50  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2507  binding-protein-dependent transport systems inner membrane component  41.38 
 
 
296 aa  200  1.9999999999999998e-50  Thermobaculum terrenum ATCC BAA-798  Bacteria  decreased coverage  0.00000371485  n/a   
 
 
-
 
NC_013517  Sterm_0717  binding-protein-dependent transport systems inner membrane component  40.22 
 
 
279 aa  200  3e-50  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2452  binding-protein-dependent transport systems inner membrane component  42.7 
 
 
299 aa  199  3.9999999999999996e-50  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.0352539  n/a   
 
 
-
 
NC_011899  Hore_20610  binding-protein-dependent transport systems inner membrane component  41.7 
 
 
273 aa  199  3.9999999999999996e-50  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_014213  Mesil_3228  binding-protein-dependent transport systems inner membrane component  38.75 
 
 
272 aa  197  2.0000000000000003e-49  Meiothermus silvanus DSM 9946  Bacteria  decreased coverage  0.00685083  normal 
 
 
-
 
NC_014213  Mesil_3420  proteophosphoglycan ppg4  38.75 
 
 
272 aa  197  2.0000000000000003e-49  Meiothermus silvanus DSM 9946  Bacteria  normal  0.257772  normal 
 
 
-
 
NC_013721  HMPREF0424_1314  ABC transporter, permease protein  41.73 
 
 
273 aa  194  1e-48  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_013131  Caci_3806  binding-protein-dependent transport systems inner membrane component  38.93 
 
 
300 aa  193  2e-48  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_0376  binding-protein-dependent transport systems inner membrane component  43.3 
 
 
278 aa  194  2e-48  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_4881  binding-protein-dependent transport systems inner membrane component  36.91 
 
 
295 aa  193  3e-48  Conexibacter woesei DSM 14684  Bacteria  normal  0.48115  normal 
 
 
-
 
NC_012848  Rleg_5052  binding-protein-dependent transport systems inner membrane component  38.38 
 
 
278 aa  192  4e-48  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.482027  normal 
 
 
-
 
NC_011368  Rleg2_5335  binding-protein-dependent transport systems inner membrane component  38.01 
 
 
278 aa  192  6e-48  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.716321  normal 
 
 
-
 
NC_007413  Ava_2094  binding-protein dependent transport system inner membrane protein  40.07 
 
 
279 aa  192  7e-48  Anabaena variabilis ATCC 29413  Bacteria  normal  0.179988  hitchhiker  0.00000184258 
 
 
-
 
NC_007604  Synpcc7942_0471  ABC-type sugar transport system permease component-like  43.3 
 
 
276 aa  191  9e-48  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_7693  putative transmembrane permease component of ABC transporter  38.28 
 
 
286 aa  191  1e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.673988 
 
 
-
 
NC_008010  Dgeo_2724  binding-protein-dependent transport systems inner membrane component  37.41 
 
 
290 aa  188  8e-47  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.191447  n/a   
 
 
-
 
NC_009565  TBFG_12076  sugar ABC transporter membrane protein  40.36 
 
 
280 aa  188  1e-46  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK1636  sugar ABC transporter, permease  36.53 
 
 
277 aa  187  2e-46  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1729  binding-protein-dependent transport systems inner membrane component  40.29 
 
 
275 aa  187  2e-46  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011981  Avi_7346  ABC transporter membrane spanning protein (sugar)  37.18 
 
 
278 aa  186  4e-46  Agrobacterium vitis S4  Bacteria  normal  0.477248  n/a   
 
 
-
 
NC_013172  Bfae_06290  carbohydrate ABC transporter membrane protein  38.58 
 
 
291 aa  186  6e-46  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2464  binding-protein-dependent transport systems inner membrane component  38.18 
 
 
270 aa  185  8e-46  Meiothermus silvanus DSM 9946  Bacteria  normal  0.668515  normal  0.267306 
 
 
-
 
NC_013411  GYMC61_2729  binding-protein-dependent transport systems inner membrane component  36.97 
 
 
293 aa  185  9e-46  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_003909  BCE_1901  sugar ABC transporter, permease protein  36.16 
 
 
277 aa  183  2.0000000000000003e-45  Bacillus cereus ATCC 10987  Bacteria  normal  0.682079  n/a   
 
 
-
 
NC_011726  PCC8801_2231  Monosaccharide-transporting ATPase  41.02 
 
 
271 aa  183  3e-45  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_012669  Bcav_0827  binding-protein-dependent transport systems inner membrane component  38.95 
 
 
295 aa  183  3e-45  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.122805 
 
 
-
 
NC_014248  Aazo_3424  binding-protein-dependent transporter inner membrane protein  39.11 
 
 
277 aa  183  3e-45  'Nostoc azollae' 0708  Bacteria  normal  0.224569  n/a   
 
 
-
 
NC_011884  Cyan7425_4398  Monosaccharide-transporting ATPase  38.52 
 
 
281 aa  183  3e-45  Cyanothece sp. PCC 7425  Bacteria  hitchhiker  0.000709548  normal  0.804646 
 
 
-
 
NC_012669  Bcav_4196  binding-protein-dependent transport systems inner membrane component  37.2 
 
 
292 aa  183  3e-45  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_014213  Mesil_3392  fumarate reductase/succinate dehydrogenase flavoprotein domain protein  39.69 
 
 
278 aa  183  3e-45  Meiothermus silvanus DSM 9946  Bacteria  normal  0.196448  normal  0.954202 
 
 
-
 
NC_013161  Cyan8802_2285  binding-protein-dependent transport systems inner membrane component  41.02 
 
 
271 aa  183  3e-45  Cyanothece sp. PCC 8802  Bacteria  normal  hitchhiker  0.00314445 
 
 
-
 
NC_011886  Achl_3568  binding-protein-dependent transport systems inner membrane component  37.63 
 
 
315 aa  182  4.0000000000000006e-45  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_012669  Bcav_3001  binding-protein-dependent transport systems inner membrane component  38.05 
 
 
308 aa  182  5.0000000000000004e-45  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_3031  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
277 aa  182  6e-45  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0478  ABC transporter, permease protein  37.78 
 
 
275 aa  181  1e-44  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
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