Gene Bcav_3897 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcav_3897 
Symbol 
ID7858710 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBeutenbergia cavernae DSM 12333 
KingdomBacteria 
Replicon accessionNC_012669 
Strand
Start bp4316182 
End bp4317051 
Gene Length870 bp 
Protein Length289 aa 
Translation table11 
GC content66% 
IMG OID643868001 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_002883901 
Protein GI229822375 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0395] ABC-type sugar transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.858464 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGCAG GAGGGCCGCG AGCGACGGCG ATCCCGGCGA CCGGCCTGCG GTCGCGGCGC 
GTGGTGACCC ACGCCGTCCT GATCCTCGGC GCACTGGTCA TGATCTATCC GTTGCTGTGG
ATGCTGTCGG CGTCGTTCAA GGAGCCGGAC CAGATCTTCA CGTCGGACTC GCTGATCCCC
CAGGACCCCG TGCTGACGAA CTACCTGCAG GGCTGGGTCG GGCTCGGGCG GCCGTTCTCG
ACGTACCTGC TCAACTCGCT CCTGGTCTGC GCGGCGGTCG TCGTCGGTAA CGTGCTCTCG
TGCTCGCTCG CCGCCTACGC GTTCGCCCGG ATGAGCTTCG TGGGTCGCAA GGTGCTGTTC
GGCGTGATGC TCGCGACGAT GATGCTGCCG CACCACGTCA CGCTGATCGC GCAGTACGCG
ATCTTCCGGG ACCTGGGCTG GGTGGACACG TACCTGCCGC TGATCGTGCC GAAGTTCCTC
GCGGTCGAGG CGTTCTTCAT CTTCCTCATG GTGCAGTTCA TCCGCGGGCT GCCGCGCGAG
CTGGACGACG CCGCCCGGAT CGACGGGTGC GGCCAGCTGC AGATCTACTG GCGTGTGGTG
TTCCCGCTGC TCCAGCCGGC GCTCGTGACG ACGGCGATCT TCTCGTTCAT CTGGACCTAC
AACGACTTCC TCACGCAGCT CATCTACGTG TCGGACCCGA AGCTGCTCAC GGTGCCGCTC
GCGCTGCGCA CGTTCCTGGA CGCGTCCGGG CAGTCGCAGT GGGGCGAGAT GTTCGCGATG
AGCATCGTCA CGCTCGTGCC GGTGCTGGTC GTGTTCGTCG TCTTCCAGCG GCGGATCATC
GACGGGATCG CGCACTCCGG CATGAAGTAG
 
Protein sequence
MSAGGPRATA IPATGLRSRR VVTHAVLILG ALVMIYPLLW MLSASFKEPD QIFTSDSLIP 
QDPVLTNYLQ GWVGLGRPFS TYLLNSLLVC AAVVVGNVLS CSLAAYAFAR MSFVGRKVLF
GVMLATMMLP HHVTLIAQYA IFRDLGWVDT YLPLIVPKFL AVEAFFIFLM VQFIRGLPRE
LDDAARIDGC GQLQIYWRVV FPLLQPALVT TAIFSFIWTY NDFLTQLIYV SDPKLLTVPL
ALRTFLDASG QSQWGEMFAM SIVTLVPVLV VFVVFQRRII DGIAHSGMK