Gene Bcav_3001 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcav_3001 
Symbol 
ID7860112 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBeutenbergia cavernae DSM 12333 
KingdomBacteria 
Replicon accessionNC_012669 
Strand
Start bp3346989 
End bp3347915 
Gene Length927 bp 
Protein Length308 aa 
Translation table11 
GC content65% 
IMG OID643867099 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_002883008 
Protein GI229821482 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0395] ABC-type sugar transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCACTGC AATCGACTCA GGCCACGCGG CAGCTCACGG GCGACGTGCT CGCCGACGCG 
CCGCCCCCGG ACCGGCGCGG CCGCCGCGCC GACGGCTCAC GGCAGAAGTG GTACTCGTCC
GTCACGTCGC GGATCGTGCT CATCGCACTG AGCCTGCTCT TCCTCACGCC GCTCTACTGG
ATGGTCGCCT CGGCGCTCAA GAGCAACGAG GAGCTCGCGA TCTACCCGCC GACGCTCTGG
CCGTCGTCGC CGATGTGGGA GAACTTCTCG CAGGCGATCG CGGCCATGCC GTTCTGGCTG
TTCTTCCGCA ACACCACGGT GATCACCGTC TCGTCGGTGA TCCTCGCCGT CATCGCGAAC
TTCGTCGTCG CGTACGGGTT CGGGTGCATC GAGTGGCGCG GCCGGGACAA GGTCTTCTAC
ATCGTCATCG CCACGCTGTT CCTGCCGTTC CCCATCACGC TCATCCCGAT GTTCGACCTG
TGGGCCAACC TCGGCTGGGT GAACACCTGG CTGCCGCTCA TCGTGCCGAA CATGTTCGCG
TCCGCATTCT TCACGTTCCT GCTGAGACAG TTCCTGCTGC AAGTTCCTCA GGACATGCTC
AACGCCGCGC GCGTGGACGG CGCCAGCGAG TGGCGGATCG CGTGGCGCAT CGTGTTCCCG
TCGGCCCGCC CGGCGCTCAC CGCCGTCGCG ATCTTCTCCG CCGTCGGTGC GTGGAACGAC
TTCATGGGAC CGCTCATCTA CCTGCAGGAG ACCAACGTCC AGACCCTGTC CATCGGGATG
CAGGTGTTCC GCATGACGAA CGCGCAGGAC ATCAGCTTCA ACCTGCTCAT GGCGGCGTCG
TTCCTGGTGA TCCTGCCGCT GATCGTCCTG TTCTTCGTCT TCCAGCGCTA CTTCATCAGT
GGCATCACCA TCGGAGGGTT CAAGTGA
 
Protein sequence
MALQSTQATR QLTGDVLADA PPPDRRGRRA DGSRQKWYSS VTSRIVLIAL SLLFLTPLYW 
MVASALKSNE ELAIYPPTLW PSSPMWENFS QAIAAMPFWL FFRNTTVITV SSVILAVIAN
FVVAYGFGCI EWRGRDKVFY IVIATLFLPF PITLIPMFDL WANLGWVNTW LPLIVPNMFA
SAFFTFLLRQ FLLQVPQDML NAARVDGASE WRIAWRIVFP SARPALTAVA IFSAVGAWND
FMGPLIYLQE TNVQTLSIGM QVFRMTNAQD ISFNLLMAAS FLVILPLIVL FFVFQRYFIS
GITIGGFK