60 decreased-coverage genes were found for selected organism/s



Page 1 of 1    << first  < prev  1  next >  last >>   


Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Smal_0028  CDS  NC_011071  34147  35175  1029  Alcohol dehydrogenase GroES domain protein  YP_002026416  normal  0.0233433  decreased coverage  1.33046e-10  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_0096  CDS  NC_011071  118628  119263  636  hypothetical protein  YP_002026484  normal  0.059299  decreased coverage  0.00703459  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_0097  CDS  NC_011071  119856  121340  1485  AAA ATPase central domain protein  YP_002026485  normal  0.0174447  decreased coverage  0.00506367  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_0301  CDS  NC_011071  364491  366206  1716  peptidase M28  YP_002026689  normal  0.613732  decreased coverage  0.00132855  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_0302  CDS  NC_011071  366293  366955  663  hypothetical protein  YP_002026690  normal  decreased coverage  0.000813107  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_0303  CDS  NC_011071  367051  368349  1299  Peptidase M23  YP_002026691  normal  decreased coverage  0.00113075  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_0304  CDS  NC_011071  368458  369954  1497  carboxyl-terminal protease  YP_002026692  normal  decreased coverage  0.000604667  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_0305  CDS  NC_011071  370064  370756  693  Rhomboid family protein  YP_002026693  normal  decreased coverage  0.000904763  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_0403  CDS  NC_011071  480116  481300  1185  major facilitator superfamily MFS_1  YP_002026791  decreased coverage  0.00475007  normal  0.145448  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_0465  CDS  NC_011071  544192  544884  693  dithiobiotin synthetase  YP_002026853  decreased coverage  2.24118e-07  normal  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_0466  CDS  NC_011071  544961  546403  1443  transcriptional regulator, GntR family with aminotransferase domain  YP_002026854  decreased coverage  1.95201e-08  normal  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_0507  CDS  NC_011071  596071  597909  1839  glucosamine--fructose-6-phosphate aminotransferase  YP_002026895  normal  decreased coverage  0.00435471  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_0741  CDS  NC_011071  865727  866743  1017  peptidase T2 asparaginase 2  YP_002027129  decreased coverage  1.25091e-09  normal  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_0755  CDS  NC_011071  886244  886555  312  30S ribosomal protein S10  YP_002027143  decreased coverage  5.08535e-12  normal  0.0162488  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_0761  CDS  NC_011071  889258  889593  336  50S ribosomal protein L22  YP_002027149  hitchhiker  0.000305048  decreased coverage  0.00987219  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_0785  CDS  NC_011071  905925  907112  1188  MscS Mechanosensitive ion channel  YP_002027173  decreased coverage  0.0017606  normal  0.0299135  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_0792  CDS  NC_011071  914433  916313  1881  propionyl-CoA synthetase  YP_002027180  decreased coverage  0.00519205  normal  0.139333  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_0793  CDS  NC_011071  916536  917051  516  hypothetical protein  YP_002027181  decreased coverage  0.00522604  normal  0.142472  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_1016  CDS  NC_011071  1155388  1156386  999  Polyprenyl synthetase  YP_002027404  decreased coverage  0.00162211  normal  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_1035  CDS  NC_011071  1186284  1188122  1839  protein of unknown function DUF195  YP_002027423  decreased coverage  5.97215e-05  normal  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_1208  CDS  NC_011071  1372498  1374075  1578  peptidase M28  YP_002027596  normal  0.382894  decreased coverage  0.00811068  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_1210  CDS  NC_011071  1375667  1376158  492  ferric uptake regulator, Fur family  YP_002027598  normal  0.427545  decreased coverage  0.00910774  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_1376  CDS  NC_011071  1563754  1566999  3246  TonB-dependent outer membrane receptor  YP_002027764  decreased coverage  0.00784128  normal  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_1444  CDS  NC_011071  1629936  1631432  1497  peptidase S10 serine carboxypeptidase  YP_002027832  decreased coverage  0.00886012  normal  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_1514  CDS  NC_011071  1709722  1711146  1425  sugar transporter  YP_002027902  decreased coverage  0.00665244  normal  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_1617  CDS  NC_011071  1817717  1819573  1857  preprotein translocase subunit SecD  YP_002028005  decreased coverage  0.00434823  normal  0.598494  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_1812  CDS  NC_011071  2031275  2034517  3243  carbamoyl phosphate synthase large subunit  YP_002028199  decreased coverage  0.00557421  normal  0.0258544  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_1813  CDS  NC_011071  2034514  2034990  477  transcription elongation factor GreA  YP_002028200  decreased coverage  0.00359574  normal  0.0174151  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_2095  CDS  NC_011071  2352816  2353886  1071  NUDIX hydrolase  YP_002028482  normal  0.390831  decreased coverage  0.00754361  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_2171  CDS  NC_011071  2434010  2435257  1248  outer membrane efflux protein  YP_002028558  decreased coverage  0.00952498  normal  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_2295  CDS  NC_011071  2575268  2576308  1041  ribonucleotide-diphosphate reductase subunit beta  YP_002028681  decreased coverage  0.00345425  normal  0.110035  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_2296  CDS  NC_011071  2576417  2578780  2364  ribonucleotide-diphosphate reductase subunit alpha  YP_002028682  decreased coverage  0.00177695  normal  0.152718  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_2308  CDS  NC_011071  2593295  2595376  2082  TonB-dependent siderophore receptor  YP_002028694  decreased coverage  0.00270239  normal  0.034674  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_2372  CDS  NC_011071  2669731  2670165  435  Glyoxalase/bleomycin resistance protein/dioxygenase  YP_002028758  decreased coverage  0.000210316  normal  0.546441  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_2499  CDS  NC_011071  2805871  2806341  471  hypothetical protein  YP_002028883  decreased coverage  0.00374964  normal  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_2542  CDS  NC_011071  2836888  2837163  276  polyhydroxyalkanoic acid system protein  YP_002028925  decreased coverage  0.00484477  normal  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_2543  CDS  NC_011071  2837244  2837735  492  poly(hydroxyalkanoate) granule-associated protein  YP_002028926  decreased coverage  0.00882865  normal  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_2713  CDS  NC_011071  3026840  3027994  1155  cytochrome d ubiquinol oxidase, subunit II  YP_002029096  decreased coverage  1.85666e-07  normal  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_2714  CDS  NC_011071  3028049  3028165  117  cyd operon protein YbgT  YP_002029097  decreased coverage  2.4907e-08  normal  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_2824  CDS  NC_011071  3139900  3140994  1095  NADH dehydrogenase subunit H  YP_002029207  decreased coverage  0.00869776  normal  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_2942  CDS  NC_011071  3279529  3280107  579  RNA polymerase, sigma-24 subunit, ECF subfamily  YP_002029324  decreased coverage  0.00874185  normal  0.936687  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_2964  CDS  NC_011071  3302973  3304241  1269  monooxygenase FAD-binding  YP_002029346  normal  decreased coverage  8.08449e-06  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_2975  CDS  NC_011071  3312875  3313555  681  ribonuclease III  YP_002029357  decreased coverage  0.00170504  hitchhiker  0.00754361  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_2996  CDS  NC_011071  3337967  3339931  1965  Peptidyl-dipeptidase A  YP_002029378  decreased coverage  0.000459005  normal  0.0414122  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_3007  CDS  NC_011071  3350611  3352734  2124  methyl-accepting chemotaxis sensory transducer  YP_002029389  normal  decreased coverage  0.00177393  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_3008  CDS  NC_011071  3352952  3354301  1350  ATPase associated with various cellular activities AAA_5  YP_002029390  normal  decreased coverage  0.00506367  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_3009  CDS  NC_011071  3354288  3355670  1383  hypothetical protein  YP_002029391  normal  0.329981  decreased coverage  0.0051675  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_3061  CDS  NC_011071  3417680  3420637  2958  TonB-dependent receptor plug  YP_002029443  decreased coverage  0.00588952  normal  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_3430  CDS  NC_011071  3859328  3860065  738  pteridine reductase  YP_002029812  normal  0.425485  decreased coverage  0.00917749  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_3431  CDS  NC_011071  3860146  3860667  522  2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase  YP_002029813  normal  0.345275  decreased coverage  0.00904958  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_3575  CDS  NC_011071  4027541  4028674  1134  GTP cyclohydrolase  YP_002029957  decreased coverage  0.00738841  normal  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_R0015  tRNA  NC_011071  866880  866965  86  tRNA-Tyr    decreased coverage  6.66826e-12  normal  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_R0016  tRNA  NC_011071  866990  867063  74  tRNA-Gly    decreased coverage  7.0019e-12  normal  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_R0047  tRNA  NC_011071  1663895  1663987  93  tRNA-Ser    decreased coverage  0.00947013  normal  0.245138  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_R0050  tRNA  NC_011071  1701743  1701819  77  tRNA-Arg    decreased coverage  0.0039275  normal  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_R0056  tRNA  NC_011071  2701032  2701107  76  tRNA-Ala    decreased coverage  7.71632e-12  normal  0.557555  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_R0057  tRNA  NC_011071  2701157  2701232  76  tRNA-Glu    decreased coverage  7.56674e-12  normal  0.548722  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_R0058  tRNA  NC_011071  2701276  2701351  76  tRNA-Ala    decreased coverage  6.93286e-12  normal  0.541415  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_R0062  tRNA  NC_011071  3028221  3028297  77  tRNA-Pro    decreased coverage  1.951e-08  normal  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Smal_R0063  tRNA  NC_011071  3028438  3028514  77  tRNA-Pro    decreased coverage  1.71942e-08  normal  Stenotrophomonas maltophilia R551-3  Bacteria 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>