| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_1376 |
|---|
| Symbol | |
|---|
| ID | 6475231 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stenotrophomonas maltophilia R551-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011071 |
|---|
| Strand | + |
|---|
| Start bp | 1563754 |
|---|
| End bp | 1566999 |
|---|
| Gene Length | 3246 bp |
|---|
| Protein Length | 1081 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642730544 |
|---|
| Product | TonB-dependent outer membrane receptor |
|---|
| Protein accession | YP_002027764 |
|---|
| Protein GI | 194365154 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00784128 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCACC CACTCCGGAT GTCCAAGCTT ACCCTTGGTC TCGTGGCTGC ACTTGCTGCC
GCTCCTGCCT TCGCCCAGAG CACCTCTGCC GGTGTCGGCG GCCAGGTCAT GTCCGCTGCA
GGCCAGCCTG TTGCCGGCGC TGAAGTCACC ATCACCCACA CCGAGTCGGG CACTGTTTCG
CGTGCTACCA CCGATGCGTC GGGTCGTTAC AACGCGCGCG GCCTGCGCGT GGGTGGCCCG
TACACCATCA CCATCACCAA GTCCGGTGAA GGCACCAAGA CCGAAGAAGG TGTCTTCCTG
AACCTGAACC AGGTCAACAC GATCAATGCC AACCTGGGCG GCGACCTGGC CGCTACCAAC
CTGGATGCAG TGAACGTCGT CGCCACCGCG GGTGGCCTGG ACCTGTTCAG CGCCACCAAG
ATGGGCACCG GCACCAACGT CACCCGCGAG ACGATGGACG CGCTGCCGTC GGCCAACCGC
AACATCCAGG ACTACATTCG CCTGGACCCG CGCATCTCGC AGGTCAGCAA GGCTGACGGT
GCGATCTCGG CCGGTGGCCA GAACACCCGT TACAACGCCA TCCGCATCGA CGGCATCAGC
GCCTCCGATC CGTTCGGCCT GGGCTCCAAC AACCTGCCGA CCGAGCGTCA GCCAGTGTCG
ATGGATGCCA TCCAGGAAAT CAACATCGAC CTGGCCAACT ACGACACCAC CATCGCCGGT
GGTACCGGTG CGGTGATCAA CGCCGTGACC AAGTCGGGTA CCAACGAATT CCACGGCACC
GTGTACGGTT CGTACCGCGA CAAGGACATG GTCCGTTCGC GCCTGGAAGG TGACCGTACG
GACTTCAACG GCTTCAAGGA CGAGAAGACC TACGGCATGA CCTTGGGCGG CCCGATCGTC
AAGGACAAGC TGTTCTTCTT CACCAACTAC GAAAAGTACG AGCGCAGTGG CGGCGGCGTC
AGCCTCGGCG ATAGCCCGTA CAACAAGGCC GGCGGCATCA GCGATGCCGA TATCGCACGT
GTCCAGAAGC GCATGTCGGA CTTGGGTTAT CCGGTCGGTG GCATCGGCGC GTTGGACAAC
AAGACCGAGA TCGAAGAATA CGCGGTCAAG CTGGACTGGA ACATCAACGA GAACCACCGT
GCAGCCCTGC GCTACAACAA GATGAAGCAG GACGTCGTCC GCTTCCCGCA GGTCAACAAC
AGCGCGATTT CGCTGAGCGA CTTCTGGTAC ACGCAGCCGA CCGAATACGA AACCTGGATG
GGTGAACTGT TCAGTGACTG GTCCGAGAAC TTCTCGACCG AGTTCAAGGT CTCGCACAAG
GACTACTCGT CCAACCGCGT CGCTGCCTCG CACCTGCCGC AGATCCGCGT GCGCTTCGGC
AACAACTCGC TGTACCTGGG TACCGAGCAG AACACCCATA CCAATCTGGT TGAGTCGAAG
GAGCTGAGCG CCTTCGGTGC TGGTACCTGG TACATCGGTG ACCACACCGT CAAGTTCGGT
TTTGATTACA CCGACAACGA CCTGATGAAC TTCTACGGCC GCAACCTGTA CGGCGCGTAT
GAGTTCGCCG ACCTGGCTGC GTTTGAAGCC GGTACCCCGT CCGCCTACCA GGTGCGTGTC
CCGCGCGCTG GCGGCAGCGT GGATGACATC CCGGCCAAGT TCCATCTGAA GAACACCGGC
CTGTTCATCC AGGACACCTG GGCGATCAAC TACAACCTGA GCCTGATGTT CGGTGTCCGT
GTGGACATGC CGGACTTCAG CACGCAGCGC CTGTACAACC CGCGCATCGA GCAGCTGTAT
GGGTTCAACA ATACCCAGCT GGTTGACAAG AAGCTCATCC AGCCGCGTGT TGGCTTCAAC
TACACCTTCG ACAGCGATCG TCCGACCCAG CTGCGCGGCG GCGTGGGCCT GTTCGGTGGC
GCTGCCCCGA ACGTGTGGCT GGCGGGCGCT TACCAGAACA CCGGCCTGAA CTACTCCGAG
TACAACCTGA CCCGTAACCC GGGTGGTTTC AGCTTCGATG CGGACAATCC GTTCATTCCG
AACCCGTCGC TGGCGTCGGC GCGCCAGAAC GTCGACCTGA TCGCCCCGGG CACCCGCCTG
CCGTCGGTCT GGAAGGCCAA CCTGGCCTTC GATCATGAGC TGCCCTGGTA CGGCATCGTG
GCCTCCGCCG AGCTGCTGGT CACCAAGGTC AAGGATGGTC TGTACTTCGA TCGTCTGGAC
GTCATGACCC CGAACGCCAA GCGCTCGGTT GGTCAGGATG GTCGTGCGCT GTACTGGAAC
GACTACGGCA TGAATGGCGC AAATGCTGGT CCCAACGGCA TGCAGGCTGG CCAGAAGAAC
GGCCGCGCCT GTGCGGCCAC CGATCTGACC TGCCCGGGTG ACCGTGTCAA CCGTCCGGGT
GATATCGGTG ATGTGATCCT GCTGCGCAAC ACCGACAAGG GGCGTGGCTC GCAGGCCACC
TTCTCGCTGG CCAAGCCGCT GACGGAGAAC TGGGGCTGGT CGCTGGGTTA CACCTACACC
CAGTCGAAGG AAGTGAGCCC GCTGACCAGC TCGCAGAACA CCTCGAACTG GAACAATACG
CTGAGCCTGA ACGCGAACGA CAATGTCGCG TACAACTCGC GTTACGCGAT CAAGGACCGT
ATCACCGGTA CCCTGGAGTG GAAGCACAAC TTCTTCGGTG ACAACGCCAC CCGAGTTGGA
CTGTTCTATG AAGGTCGTTC GGGCCGTCCG TACAGCTACG TCTACTACAA CGACGTGAAC
GGCGATGGCG CGGGTACCAA TGACCTGTTC TACGTGCCGA AGGGCCCGGG TGACGTGCTG
TTCACCGGCG GCGCCGACAT GGAGAAGAAG TTCTTCGACT GGCTGGCGCA GAATCCGGAG
CTGGAGGCCT ATCGTGGCAG CACGGTGCCG GCCAATGCGC ACCGCGCCAA GTGGGTCAAC
AGCTTCGACG TTCGCATCAG CCAGGAATTC CCGGGCTTCG CGAAGACCCA CAAGGGTGAG
ATTGCGCTGG ACATCATGAA TGTCGGCAAC CTGCTCAACA AGAAGTGGGG CCTGATCGAC
GATTACGGCT TCTACGCCAC TCGTCGCGTT GCCAACTACT CGGGTATCGA CCCGGCTACC
GGCAAGTACC TGTACAACTT CACCGGCCGT ACCGACAACT CCTCGATCCA GGAAAACAAC
AACGACAAGG GCAACACCGC CGTGTCGCGC TGGTCGATGC AGCTGACCGT GAAGTACAAG
TTCTGA
|
|---|
| Protein sequence | MTHPLRMSKL TLGLVAALAA APAFAQSTSA GVGGQVMSAA GQPVAGAEVT ITHTESGTVS
RATTDASGRY NARGLRVGGP YTITITKSGE GTKTEEGVFL NLNQVNTINA NLGGDLAATN
LDAVNVVATA GGLDLFSATK MGTGTNVTRE TMDALPSANR NIQDYIRLDP RISQVSKADG
AISAGGQNTR YNAIRIDGIS ASDPFGLGSN NLPTERQPVS MDAIQEINID LANYDTTIAG
GTGAVINAVT KSGTNEFHGT VYGSYRDKDM VRSRLEGDRT DFNGFKDEKT YGMTLGGPIV
KDKLFFFTNY EKYERSGGGV SLGDSPYNKA GGISDADIAR VQKRMSDLGY PVGGIGALDN
KTEIEEYAVK LDWNINENHR AALRYNKMKQ DVVRFPQVNN SAISLSDFWY TQPTEYETWM
GELFSDWSEN FSTEFKVSHK DYSSNRVAAS HLPQIRVRFG NNSLYLGTEQ NTHTNLVESK
ELSAFGAGTW YIGDHTVKFG FDYTDNDLMN FYGRNLYGAY EFADLAAFEA GTPSAYQVRV
PRAGGSVDDI PAKFHLKNTG LFIQDTWAIN YNLSLMFGVR VDMPDFSTQR LYNPRIEQLY
GFNNTQLVDK KLIQPRVGFN YTFDSDRPTQ LRGGVGLFGG AAPNVWLAGA YQNTGLNYSE
YNLTRNPGGF SFDADNPFIP NPSLASARQN VDLIAPGTRL PSVWKANLAF DHELPWYGIV
ASAELLVTKV KDGLYFDRLD VMTPNAKRSV GQDGRALYWN DYGMNGANAG PNGMQAGQKN
GRACAATDLT CPGDRVNRPG DIGDVILLRN TDKGRGSQAT FSLAKPLTEN WGWSLGYTYT
QSKEVSPLTS SQNTSNWNNT LSLNANDNVA YNSRYAIKDR ITGTLEWKHN FFGDNATRVG
LFYEGRSGRP YSYVYYNDVN GDGAGTNDLF YVPKGPGDVL FTGGADMEKK FFDWLAQNPE
LEAYRGSTVP ANAHRAKWVN SFDVRISQEF PGFAKTHKGE IALDIMNVGN LLNKKWGLID
DYGFYATRRV ANYSGIDPAT GKYLYNFTGR TDNSSIQENN NDKGNTAVSR WSMQLTVKYK
F
|
|---|
| |