Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smal_1617 |
Symbol | secD |
ID | 6475487 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Stenotrophomonas maltophilia R551-3 |
Kingdom | Bacteria |
Replicon accession | NC_011071 |
Strand | + |
Start bp | 1817717 |
End bp | 1819573 |
Gene Length | 1857 bp |
Protein Length | 618 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642730799 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_002028005 |
Protein GI | 194365395 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00434823 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.598494 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCGAAT TTCCACGCTG GAAGTACGTC GTCATCCTGA TCGTACTGGC GCTCAGCGCG CTGTACGCGC TGCCCAACAT CTACCAGAAG GACCCGGCCA TCCAGATCAC CGCCAACCGT GGCGGGCAGA TCGACGATGC GCTGCGTGAC CGTGTGCTGG CCGACCTGAA GAAGGCCGGC GTGGACGCCG TTGGTGCCGA GAAGGAAGGG GAGAGCCTGA TTGTCCGCCT GCCGGACCTG AAGGCGCAGT CCGCTGCCAG CGACGCCCTG CGTGACACCG TCGGTGAGAA CTACACCGTG GCCCTGAACC TGGCCTCGAC CGTGCCGGAC TGGCTGGCCA ACCTCGGCGG TCGCCCCATG GTGCTGGGCC TGGACCTGCA GGGTGGCGTG CACTTCGTGC TGCAGGTCGA CCAGAAGGCC GCCCTGGACA AGCGTCTGGA TGCCTACACC GAAGACGTGC GCAGCACCCT GCGTGATGCG CGCATCCCGT ACCAGTCGGT GGAACGCCGC GCTGACAACA GCATCGTGGC CAACCTGAGC CCGTCCGCTG GTGACGATGC CGCGCAGCGC GCCCGTGCCG CCCTGGTCAA GGCGCAGCCG ACCCTCGGCT ACGACGTCAG TGGCAACCGC ATCACGGTGA CCGTGCCGGA AACCGAGATC ACCCAGATCG CCAACGGTGC CATCGAACAG AACATCAACA CCCTGCGCAA CCGTGTGAAC CAGCTCGGCG TGGCCGAGCC GATCATCCAG CGCCAGGGTG CCGACCGCGT GGTCGTGCAG CTGCCGGGCG TGCAGGACAC CGCCGAAGCC AAGCGCATGA TCGGCGCCAC CGCCACCCTG GAGTACCGTG CGGTGGTCGA GGGCAATGCG CAGGACGCCA TCACCGCCGG CCGCATCCCG CCGGAAGCGA AGGTCTACCA GCAGCGTGAT GGCCGCGGCC CGATCCTGCT GAACAAGCGC GTGATCGTCA CCGGTGACCA GATGGTCGGC GCGCAGGCGG TAACCGATTC GAACAGTGGC TCACCGGCGG TCAGCGTGAC GCTGAACAAT GTCGGCGGCC AGCGCATGTT CGACTTCACC AGTGCCAACG TGAACAAGCC GATGGCGGTG GTCTACACCG AGCGCGTGCC GACCGTGACC GTCGTTGACG GCCAGGAAGT GCGTGGCTTC AAGGTCAACG AGGAAGTGAT CTCGGTGGCC AACATCAATG GCGTGTTCGG CAAGAACTTC CAGACCACCG GACTGCAGAA GAAGGAAGCC GAGGACCTGG CCAAGCTGCT GAAGTCCGGC TCGCTGGCCG CGCCGATGGA CTTCGTCGAA GAGCGCGTGG TCGGCCCGAG CCTGGGTGCC GAGAACGTCA AGAACGGTAT GCGCGCGGTC GTGTTCGCGT TCCTGTTCAC CCTGGTGTTC TTCAGCGTCT ACTACCGCAT GTTCGGCGTG ATCACCTCGA TCGCGATGCT GTTCAACCTG CTGATCGTGG TGGCGGTGAT GTCGCTGTTC GGCGCGACCA TGACCCTGCC GGGCTTCGCC GGCCTGGCGT TGTCGGTCGG CCTGTCGGTG GACGCCAACG TGCTGATCAA CGAACGTATC CGTGAAGAAC TGCGTGCCGG CGTGCCGGGC AAGACCGCGA TCGTGACCGG TTACGAACGT GCTTCGGGCA CCATCCTCGA CGCCAACCTG ACCGGCCTGA TCGTCGGTGT GGCGCTGTTC GCATTCGGTA CCGGTCCGCT GAAGGGCTTC GCGCTGACCA TGATCATCGG TATTTTCGCC TCCATGTTCA CCGCGATCAC CGTGTCGCGT GCACTGGCGA CGCTGATCTA CGGCCGCCGC AAGAAGCTCC AGAACGTGGC CATCTGA
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Protein sequence | MLEFPRWKYV VILIVLALSA LYALPNIYQK DPAIQITANR GGQIDDALRD RVLADLKKAG VDAVGAEKEG ESLIVRLPDL KAQSAASDAL RDTVGENYTV ALNLASTVPD WLANLGGRPM VLGLDLQGGV HFVLQVDQKA ALDKRLDAYT EDVRSTLRDA RIPYQSVERR ADNSIVANLS PSAGDDAAQR ARAALVKAQP TLGYDVSGNR ITVTVPETEI TQIANGAIEQ NINTLRNRVN QLGVAEPIIQ RQGADRVVVQ LPGVQDTAEA KRMIGATATL EYRAVVEGNA QDAITAGRIP PEAKVYQQRD GRGPILLNKR VIVTGDQMVG AQAVTDSNSG SPAVSVTLNN VGGQRMFDFT SANVNKPMAV VYTERVPTVT VVDGQEVRGF KVNEEVISVA NINGVFGKNF QTTGLQKKEA EDLAKLLKSG SLAAPMDFVE ERVVGPSLGA ENVKNGMRAV VFAFLFTLVF FSVYYRMFGV ITSIAMLFNL LIVVAVMSLF GATMTLPGFA GLALSVGLSV DANVLINERI REELRAGVPG KTAIVTGYER ASGTILDANL TGLIVGVALF AFGTGPLKGF ALTMIIGIFA SMFTAITVSR ALATLIYGRR KKLQNVAI
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