Gene Smal_1617 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmal_1617 
SymbolsecD 
ID6475487 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStenotrophomonas maltophilia R551-3 
KingdomBacteria 
Replicon accessionNC_011071 
Strand
Start bp1817717 
End bp1819573 
Gene Length1857 bp 
Protein Length618 aa 
Translation table11 
GC content65% 
IMG OID642730799 
Productpreprotein translocase subunit SecD 
Protein accessionYP_002028005 
Protein GI194365395 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00434823 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.598494 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCGAAT TTCCACGCTG GAAGTACGTC GTCATCCTGA TCGTACTGGC GCTCAGCGCG 
CTGTACGCGC TGCCCAACAT CTACCAGAAG GACCCGGCCA TCCAGATCAC CGCCAACCGT
GGCGGGCAGA TCGACGATGC GCTGCGTGAC CGTGTGCTGG CCGACCTGAA GAAGGCCGGC
GTGGACGCCG TTGGTGCCGA GAAGGAAGGG GAGAGCCTGA TTGTCCGCCT GCCGGACCTG
AAGGCGCAGT CCGCTGCCAG CGACGCCCTG CGTGACACCG TCGGTGAGAA CTACACCGTG
GCCCTGAACC TGGCCTCGAC CGTGCCGGAC TGGCTGGCCA ACCTCGGCGG TCGCCCCATG
GTGCTGGGCC TGGACCTGCA GGGTGGCGTG CACTTCGTGC TGCAGGTCGA CCAGAAGGCC
GCCCTGGACA AGCGTCTGGA TGCCTACACC GAAGACGTGC GCAGCACCCT GCGTGATGCG
CGCATCCCGT ACCAGTCGGT GGAACGCCGC GCTGACAACA GCATCGTGGC CAACCTGAGC
CCGTCCGCTG GTGACGATGC CGCGCAGCGC GCCCGTGCCG CCCTGGTCAA GGCGCAGCCG
ACCCTCGGCT ACGACGTCAG TGGCAACCGC ATCACGGTGA CCGTGCCGGA AACCGAGATC
ACCCAGATCG CCAACGGTGC CATCGAACAG AACATCAACA CCCTGCGCAA CCGTGTGAAC
CAGCTCGGCG TGGCCGAGCC GATCATCCAG CGCCAGGGTG CCGACCGCGT GGTCGTGCAG
CTGCCGGGCG TGCAGGACAC CGCCGAAGCC AAGCGCATGA TCGGCGCCAC CGCCACCCTG
GAGTACCGTG CGGTGGTCGA GGGCAATGCG CAGGACGCCA TCACCGCCGG CCGCATCCCG
CCGGAAGCGA AGGTCTACCA GCAGCGTGAT GGCCGCGGCC CGATCCTGCT GAACAAGCGC
GTGATCGTCA CCGGTGACCA GATGGTCGGC GCGCAGGCGG TAACCGATTC GAACAGTGGC
TCACCGGCGG TCAGCGTGAC GCTGAACAAT GTCGGCGGCC AGCGCATGTT CGACTTCACC
AGTGCCAACG TGAACAAGCC GATGGCGGTG GTCTACACCG AGCGCGTGCC GACCGTGACC
GTCGTTGACG GCCAGGAAGT GCGTGGCTTC AAGGTCAACG AGGAAGTGAT CTCGGTGGCC
AACATCAATG GCGTGTTCGG CAAGAACTTC CAGACCACCG GACTGCAGAA GAAGGAAGCC
GAGGACCTGG CCAAGCTGCT GAAGTCCGGC TCGCTGGCCG CGCCGATGGA CTTCGTCGAA
GAGCGCGTGG TCGGCCCGAG CCTGGGTGCC GAGAACGTCA AGAACGGTAT GCGCGCGGTC
GTGTTCGCGT TCCTGTTCAC CCTGGTGTTC TTCAGCGTCT ACTACCGCAT GTTCGGCGTG
ATCACCTCGA TCGCGATGCT GTTCAACCTG CTGATCGTGG TGGCGGTGAT GTCGCTGTTC
GGCGCGACCA TGACCCTGCC GGGCTTCGCC GGCCTGGCGT TGTCGGTCGG CCTGTCGGTG
GACGCCAACG TGCTGATCAA CGAACGTATC CGTGAAGAAC TGCGTGCCGG CGTGCCGGGC
AAGACCGCGA TCGTGACCGG TTACGAACGT GCTTCGGGCA CCATCCTCGA CGCCAACCTG
ACCGGCCTGA TCGTCGGTGT GGCGCTGTTC GCATTCGGTA CCGGTCCGCT GAAGGGCTTC
GCGCTGACCA TGATCATCGG TATTTTCGCC TCCATGTTCA CCGCGATCAC CGTGTCGCGT
GCACTGGCGA CGCTGATCTA CGGCCGCCGC AAGAAGCTCC AGAACGTGGC CATCTGA
 
Protein sequence
MLEFPRWKYV VILIVLALSA LYALPNIYQK DPAIQITANR GGQIDDALRD RVLADLKKAG 
VDAVGAEKEG ESLIVRLPDL KAQSAASDAL RDTVGENYTV ALNLASTVPD WLANLGGRPM
VLGLDLQGGV HFVLQVDQKA ALDKRLDAYT EDVRSTLRDA RIPYQSVERR ADNSIVANLS
PSAGDDAAQR ARAALVKAQP TLGYDVSGNR ITVTVPETEI TQIANGAIEQ NINTLRNRVN
QLGVAEPIIQ RQGADRVVVQ LPGVQDTAEA KRMIGATATL EYRAVVEGNA QDAITAGRIP
PEAKVYQQRD GRGPILLNKR VIVTGDQMVG AQAVTDSNSG SPAVSVTLNN VGGQRMFDFT
SANVNKPMAV VYTERVPTVT VVDGQEVRGF KVNEEVISVA NINGVFGKNF QTTGLQKKEA
EDLAKLLKSG SLAAPMDFVE ERVVGPSLGA ENVKNGMRAV VFAFLFTLVF FSVYYRMFGV
ITSIAMLFNL LIVVAVMSLF GATMTLPGFA GLALSVGLSV DANVLINERI REELRAGVPG
KTAIVTGYER ASGTILDANL TGLIVGVALF AFGTGPLKGF ALTMIIGIFA SMFTAITVSR
ALATLIYGRR KKLQNVAI